Contig 003441:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS116A12+                                                          CCTGGAAAACCTG
                      ____________________________________________________________
consensus                                                            CCTGGAAAACCTG
 
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JMFS116A12+           GCTGCAAGGCCGGTCTGGCAAGAGGATAAGATGAGACTGTCTGAGGTGAAGATTGCTGTA
JMFS137B05+                                 AGGATAAGATGAGACTGTCTGAGGTGAAGATTGCTGTA
                      ____________________________________________________________
consensus             GCTGCAAGGCCGGTCTGGCAAGAGGATAAGATGAGACTGTCTGAGGTGAAGATTGCTGTA
 
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JMFS116A12+           AGGTAGTAATGGGAGCAGCAAATCGTGGATCCATAGGTGACTGAGGAACAGCGACACTTG
JMFS137B05+           AGGTAGTAATGGGAGCAGCAAATCGTGGATCCATAGGTGACTGAGGAACAGCGACACTTG
                      ____________________________________________________________
consensus             AGGTAGTAATGGGAGCAGCAAATCGTGGATCCATAGGTGACTGAGGAACAGCGACACTTG
 
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JMFS116A12+           GCTGCAAAGTGCCCATGCTCTGTGGGGAGGATACCTTAGGGACTGGAGGTGATGAAATAG
JMFS137B05+           GCTGCAAAGTGCCCATGCTCTGTGGGGAGGATACCTTAGGGACTGGAGGTGATGAAATAG
JMFS005B05+                                GTGGGGAGGATACCTTAGGGACTGGAGGTGATGAAATAG
JMFS099B06+                                                         AGGTGATGAAATAG
                      ____________________________________________________________
consensus             GCTGCAAAGTGCCCATGCTCTGTGGGGAGGATACCTTAGGGACTGGAGGTGATGAAATAG
 
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JMFS116A12+           GGGCTGAAACAGGTCTAACTGATGGTGAGAAAGATGGCGGTCCAGCAAATGAAGAATGCG
JMFS137B05+           GGGCTGAAACAGGTCTAACTGATGGTGAGAAAGATGGCGGTCCAGCAAATGAAGAATGCG
JMFS005B05+           GGGCTGAAACAGGTCTAACTGATGGTGAGAAAGATGGCGGTCCAGCAAATGAAGAATGCG
JMFS103F04+               TGAAACAGGTCTAACTGATGGTGAGAAAGATGGCGGTCCAGCAAATGAAGAATGCG
JMFS099B06+           GGGCTGAAACAGGTCTAACTGATGGTGAGAAAGATGGCGGTCCAGCAAATGAAGAATGCG
                      ____________________________________________________________
consensus             GGGCTGAAACAGGTCTAACTGATGGTGAGAAAGATGGCGGTCCAGCAAATGAAGAATGCG
 
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JMFS116A12+           GAGGTGGCACCTGGGCAGTTGAAGAAAATTGCGGACTTGGAAAACGTTGGAAAGAGCCTG
JMFS137B05+           GAGGTGGCACCTGGGCAGTTGAAGAAAATTGCGGACTTGGAAAACGTTGGAAAGAGCCTG
JMFS005B05+           GAGGTGGCACCTGGGCAGTTGAAGAAAATTGCGGACTTGGAAAACGTTGGAAAGAGCCTG
JMFS103F04+           GAGGTGGCACCTGGGCAGTTGAAGAAAATTGCGGACTTGGAAAACGTTGGAAAGAGCCTG
JMFS099B06+           GAGGTGGCACCTGGGCAGTTGAAGAAAATTGCGGACTTGGAAAACGTTGGAAAGAGCCTG
                      ____________________________________________________________
consensus             GAGGTGGCACCTGGGCAGTTGAAGAAAATTGCGGACTTGGAAAACGTTGGAAAGAGCCTG
 
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JMFS116A12+           GACCTGATGTACCATGTGATGCAGACATTGGAGGTGGTGAAATCCCCGGCGCCATAGGTC
JMFS137B05+           GACCTGATGTACCATGTGATGCAGACATTGGAGGTGGTGAAATCCCCGGCGCCATAGGTC
JMFS005B05+           GACCTGATGTACCATGTGATGCAGACATTGGAGGTGGTGAAATCCCCGGCGCCATAGGTC
JMFS103F04+           GACCTGATGTACCATGTGATGCAGACATTGGAGGTGGTGAAATCCCCGGCGCCATAGGTC
JMFS099B06+           GACCTGATGTACCATGTGATGCAGACATTGGAGGTGGTGAAATCCCCGGCGCCATAGGTC
                      ____________________________________________________________
consensus             GACCTGATGTACCATGTGATGCAGACATTGGAGGTGGTGAAATCCCCGGCGCCATAGGTC
 
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JMFS116A12+           TGAAACCCGAAGCCTCATATCCAACCACAGGCCCAGATGAATAGGAAGGTGGCATTGACT
JMFS137B05+           TGAAACCCGAAGCCTCATATCCAACCACAGGCCCAGATGAATAGGAAGGTGGCATTGACT
JMFS005B05+           TGAAACCCGAAGCCTCATATCCAACCACAGGCCCAGATGAATAGGAAGGTGGCATTGACT
JMFS103F04+           TGAAACCCGAAGCCTCATATCCAACCACAGGCCCAGATGAATAGGAAGGTGGCATTGACT
JMFS099B06+           TGAAACCCGAAGCCTCATATCCAACCACAGGCCCAGATGAATAGGAAGGTGGCATTGACT
                      ____________________________________________________________
consensus             TGAAACCCGAAGCCTCATATCCAACCACAGGCCCAGATGAATAGGAAGGTGGCATTGACT
 
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JMFS116A12+           GGGAGGAAGCGGGAGGAGGAGGCTGAAAAGCAGATGATTGGAAAGGTGTTGCACCCCGTG
JMFS137B05+           GGGAGGAAGCGGGAGGAGGAGGCTGAAAAGCAGATGATTGGAAAGGTGTTGCACCCCGTG
JMFS005B05+           GGGAGGAAGCGGGAGGAGGAGGCTGAAAAGCAGATGATTGGAAAGGTGTTGCACCCCGTG
JMFS103F04+           GGGAGGAAGCGGGAGGAGGAGGCTGAAAAGCAGATGATTGGAAAGGTGTTGCACCCCGTG
JMFS099B06+           GGGAGGAAGCGGGAGGAGGAGGCTGAAAAGCAGATGATTGGAAAGGTGTTGCACCCCGTG
                      ____________________________________________________________
consensus             GGGAGGAAGCGGGAGGAGGAGGCTGAAAAGCAGATGATTGGAAAGGTGTTGCACCCCGTG
 
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JMFS116A12+           GAGGCGGAGCAGAAAAAGGTGTGGAAGCAGGTCTTAAAGGCAAATTCAATTGATTAGGAT
JMFS137B05+           GAGGCGGAGCAGAAAAAGGTGTGGAAGCAGGTCTTAAAGGCAAATTCAATTGATTAGGAT
JMFS005B05+           GAGGCGGAGCAGAAAAAGGTGTGGAAGCAGGTCTTAAAGGCAAATTCAATTGATTAGGAT
JMFS103F04+           GAGGCGGAGCAGAAAAAGGTGTGGAAGCAGGTCTTAAAGGCAAATTCAATTGATTAGGAT
JMFS099B06+           GAGGCGGAGCAGAAAAAGGTGTGGAAGCAGGTCTTAAAGGCAAATTCAATTGATTAGGAT
                      ____________________________________________________________
consensus             GAGGCGGAGCAGAAAAAGGTGTGGAAGCAGGTCTTAAAGGCAAATTCAATTGATTAGGAT
 
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JMFS116A12+           TTTCAGTCCCCATGGTTTAATGACAATGCTCCTGGGAAAGTATGAAATT           
JMFS137B05+           TTTCAGTCCCCATGGTTTAATGACAATGCTCCTGGGAAAGTATGAAATTGGGTTGGTGGC
JMFS005B05+           TTTCAGTCCCCATGGTTTAATGACAATGCTCCTGGGAAAGTATGAAATTGGGTTGGTGGC
JMFS103F04+           TTTCAGTCCCCATGGTTTAATGACAATGCTCCTGGGAAAGTATGAAATTGGGTTGGTGGC
JMFS099B06+           TTTCAGTCCCCATGGTTTAATGACAATGCTCCTGGGAAAGTATGAAATTGGGTTGGTGGC
                      ____________________________________________________________
consensus             TTTCAGTCCCCATGGTTTAATGACAATGCTCCTGGGAAAGTATGAAATTGGGTTGGTGGC
 
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JMFS137B05+           GGTGTTTTGGGTAGTGGA                                          
JMFS005B05+           GGTGTTTTGGGTAGTGGAGAATTAGAGTTGAAAGAGGTGGAGATCGGCGGTAGTTGATGT
JMFS103F04+           GGTGTTTTGGGTAGTGGAGAATTAGAGTTGAAAGAGGTGGAGATCGGCGGTAGTTGATGT
JMFS099B06+           GGTGTTTTGGGTAGTGGAGAATTAGAGTTGAAAGAGGTGGAGATCGGCGGTAGTTGATGT
                      ____________________________________________________________
consensus             GGTGTTTTGGGTAGTGGAGAATTAGAGTTGAAAGAGGTGGAGATCGGCGGTAGTTGATGT
 
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JMFS005B05+           TTGAAGTGCGATTTATATGGCAGTCAAATTGCAGCGCCGAAATTGATAGAGG        
JMFS103F04+           TTGAAGTGCGATTTATATGGCAGTCAAATTGCAGCGCCGAAATTGATAGAGGAATTACGC
JMFS099B06+           TTGAAGTGCGATTTATATGGCAGTCAAATTGCAGCGCCGAAATTGATAGAGGAATTACGC
                      ____________________________________________________________
consensus             TTGAAGTGCGATTTATATGGCAGTCAAATTGCAGCGCCGAAATTGATAGAGGAATTACGC
 
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JMFS103F04+           ATCAGGAAAGAGATCTAGAGAGGAGGGAGGA                             
JMFS099B06+           ATCAGGAAAGAGATCTAGAGAGGAGGGAGGAGCATAGGAAATAGGAATACGATGAGAGAA
                      ____________________________________________________________
consensus             ATCAGGAAAGAGATCTAGAGAGGAGGGAGGAGCATAGGAAATAGGAATACGATGAGAGAA