Contig 003432:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS089F09Sequence628003432 (3)ref|XP_010023597.1|6e-120PREDICTED: DNA topoisomerase 2-like [Eucalyptus grandis] gb|KCW59909.1| hypothet
JMFS105H01Sequence625003432 (3)ref|XP_010023597.1|7e-124PREDICTED: DNA topoisomerase 2-like [Eucalyptus grandis] gb|KCW59909.1| hypothet
JMSF048J05Sequence676003432 (3)ref|XP_009630917.1|2e-107PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-like [Nicotiana tomentosifo749022661gb|KDO83470.1|7e-07hypothetical protein CISIN_1g0004592mg, partial [Citrus sinensis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF048J05+ ATT
                      ____________________________________________________________
consensus ATT
 
. : . : . : . : . : . :
JMSF048J05+ CAAGTAGTCAAGAAGGATATCGTCCTCCTTGCAAAACAAAAACCGGGCAGCAGGCGAAAG
                      ____________________________________________________________
consensus CAAGTAGTCAAGAAGGATATCGTCCTCCTTGCAAAACAAAAACCGGGCAGCAGGCGAAAG
 
. : . : . : . : . : . :
JMSF048J05+ TCGAGTATAAATGTACCTAGCACTTGCATGGTCCTTGCCACCCGCAGTTCTTGTGCCAAA
                      ____________________________________________________________
consensus TCGAGTATAAATGTACCTAGCACTTGCATGGTCCTTGCCACCCGCAGTTCTTGTGCCAAA
 
. : . : . : . : . : . :
JMSF048J05+ TTGACCATTAGGTTGGAAAAGGTTTATGTTATTGCTGCCAACATAATTCTGAGCCAGGCC
                      ____________________________________________________________
consensus TTGACCATTAGGTTGGAAAAGGTTTATGTTATTGCTGCCAACATAATTCTGAGCCAGGCC
 
. : . : . : . : . : . :
JMSF048J05+ AATAATGGTACCCTGCAAACTTTGTTCACCATGATGGTATGCTGAGTGCTCAGAAACATA
JMFS105H01+ TTTGTTCACCATGATGGTATGCTGAGTGCTCAGAAACATA
JMFS089F09+ TGATGGTATGCTGAGTGCTCAGAAACATA
                      ____________________________________________________________
consensus AATAATGGTACCCTGCAAACTTTGTTCACCATGATGGTATGCTGAGTGCTCAGAAACATA
 
. : . : . : . : . : . :
JMSF048J05+ CCCAGAGAATTGAGCAACCTTTGCTTCCTTGATGAAGTTTCTCTTAAAAGCACAAAACAG
JMFS105H01+ CCCAGAGAATTGAGCAACCTTTGCTTCCTTGATGAAGTTTCTCTTAAAAGCACAAAACAG
JMFS089F09+ CCCAGAGAATTGAGCAACCTTTGCTTCCTTGATGAAGTTTCTCTTAAAAGCACAAAACAG
                      ____________________________________________________________
consensus CCCAGAGAATTGAGCAACCTTTGCTTCCTTGATGAAGTTTCTCTTAAAAGCACAAAACAG
 
. : . : . : . : . : . :
JMSF048J05+ GATCTTCCTTTGACCAGGTTTAAGACCATCAAGCATTGATGGAATAGACCTTTGAAGGTC
JMFS105H01+ GATCTTCCTTTGACCAGGTTTAAGACCATCAAGCATTGATGGAATAGACCTTTGAAGGTC
JMFS089F09+ GATCTTCCTTTGACCAGGTTTAAGACCATCAAGCATTGATGGAATAGACCTTTGAAGGTC
                      ____________________________________________________________
consensus GATCTTCCTTTGACCAGGTTTAAGACCATCAAGCATTGATGGAATAGACCTTTGAAGGTC
 
. : . : . : . : . : . :
JMSF048J05+ AGCCATCGAAAACAGAATAAGCTCTTTGTTAACAAACTCAGTGTATTTAATGGACTTCAA
JMFS105H01+ AGCCATCGAAAACAGAATAAGCTCTTTGTTAACAAACTCAGTGTATTTAATGGACTTCAA
JMFS089F09+ AGCCATCGAAAACAGAATAAGCTCTTTGTTAACAAACTCAGTGTATTTAATGGACTTCAA
                      ____________________________________________________________
consensus AGCCATCGAAAACAGAATAAGCTCTTTGTTAACAAACTCAGTGTATTTAATGGACTTCAA
 
. : . : . : . : . : . :
JMSF048J05+ ATCCTGATCAAGGTAAGTTCCAGGCTCAAATTGTCTCAGCCAGTTCTTCCTCGCTTCAAT
JMFS105H01+ ATTCTGATCAAGGTAAGTTCCAGGCTCAAATTGTCTCAGCCAGTTCTTCCTCGCTTCAAT
JMFS089F09+ ATTCTGATCAAGGTAAGTTCCAGGCTCAAATTGTCTCAGCCAGTTCTTCCTCGCTTCAAT
                      ____________________________________________________________
consensus ATTCTGATCAAGGTAAGTTCCAGGCTCAAATTGTCTCAGCCAGTTCTTCCTCGCTTCAAT
 
. : . : . : . : . : . :
JMSF048J05+ CTTCTTCTTGCTAAAAGCAAGTTNTATTGCCTCCCCATCTCGGTCATCTGCCCAGAAAAA
JMFS105H01+ CTTCTTCTTGCTAAAAGCAAGTTCTATTGCCTCCCCATCTCGGTCATCTGCCCAG-AAAA
JMFS089F09+ CTTCTTCTTGCTAAAAGCAAGTTCTATTGCCTCCCCATCTCGGTCATCTGCCCAG-AAAA
                      ____________________________________________________________
consensus CTTCTTCTTGCTAAAAGCAAGTTCTATTGCCTCCCCATCTCGGTCATCTGCCCAG-AAAA
 
. : . : . : . : . : . :
JMSF048J05+ AATTCTTCCTGTGCAGCTGAAGATTTCTGAAGTACTCCTTTCCTTCCTGAGATGTACTTG
JMFS105H01+ AATTCTTCCTGTGCAGCTGAAGATTTCTGAAGTACTCCTTTCCTTCCTGAGATGTACTTG
JMFS089F09+ AATTCTTCCTGTGCAGCTGAAGATTTCTGAAGTACTCCTTTCCTTCCTGAGATGTACTTG
                      ____________________________________________________________
consensus AATTCTTCCTGTGCAGCTGAAGATTTCTGAAGTACTCCTTTCCTTCCTGAGATGTACTTG
 
. : . : . : . : . : . :
JMSF048J05+ TTCCCAACCCCTTGTAGTACTTTATAGACCAACCGCGTGCATTGTCCCCTAAACTCTCCT
JMFS105H01+ TTCCCAACCCCTTGTAGTACTTTATAGACCAACCGCGTGCATTGTCCCCTAAACTCTCCT
JMFS089F09+ TTCCCAACCCCTTGTAGTACTTTATAGACCAACCGCGTGCATTGTCCCCTAAACTCTCCT
                      ____________________________________________________________
consensus TTCCCAACCCCTTGTAGTACTTTATAGACCAACCGCGTGCATTGTCCCCTAAACTCTCCT
 
. : . : . : . : . : . :
JMSF048J05+ TCCATGCTTCATA
JMFS105H01+ TCCATGCTTCATACTCAGGCATAGAGTAAAATGCCAATTTCTCCCCATTTTTTCTTGTAG
JMFS089F09+ TCCATGCTTCATACTCAGGCATAGAGTAAAATGCCAATTTCTCCCCATTTTTTCTTGTAG
                      ____________________________________________________________
consensus TCCATGCTTCATACTCAGGCATAGAGTAAAATGCCAATTTCTCCCCATTTTTTCTTGTAG
 
. : . : . : . : . : . :
JMFS105H01+ CCTTGACAATAGGTGTGATGAACTCCACTAAAAATGATGGAACTTTCAGCAATGATGGCC
JMFS089F09+ CCTTGACAATAGGTGTGATGAACTCCACTAAAAATGATGGAACTTTCAGCAATGATGGCC
                      ____________________________________________________________
consensus CCTTGACAATAGGTGTGATGAACTCCACTAAAAATGATGGAACTTTCAGCAATGATGGCC
 
. : . : . : . : . : . :
JMFS105H01+ AGAATGTGTGAATAAAATTAATCAGAAGCCCCTTGATGTGAGAA
JMFS089F09+ AGAATGTGTGAATAAAATTAATCAGAAGCCCCTTGATGTGAGAANCCATCATGATCCTGA
                      ____________________________________________________________
consensus AGAATGTGTGAATAAAATTAATCAGAAGCCCCTTGATGTGAGAANCCATCATGATCCTGA