Contig 003429:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS088D10Sequence645003429 (2)ref|XP_006347944.1|8e-42PREDICTED: putative late blight resistance protein homolog R1B-14-like isoform
JMSF026H20Sequence611003429 (2)ref|XP_004243044.2|8e-16PREDICTED: putative late blight resistance protein homolog R1B-16 [Solanum lyco741021475emb|CDP05558.1|9e-19unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H20+                               TCTAAGACGATCCTTCACAATTTTCACCTCATCATCAAAA
                      ____________________________________________________________
consensus                                 TCTAAGACGATCCTTCACAATTTTCACCTCATCATCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H20+           CCCACTATGTCAGCCCCTGCAGCTGCAATTTGTGAGGAAACAGAGTTGATGACGAGATTG
                      ____________________________________________________________
consensus             CCCACTATGTCAGCCCCTGCAGCTGCAATTTGTGAGGAAACAGAGTTGATGACGAGATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H20+           AATACCCTGCGGCTTTTGACTTTTTCATTTTCATGGCTTTGCAGTTGGTCAGGAGGCGGA
                      ____________________________________________________________
consensus             AATACCCTGCGGCTTTTGACTTTTTCATTTTCATGGCTTTGCAGTTGGTCAGGAGGCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H20+           TCAGATACCATGGTGCTTTTGACTTTTTCGTTGTCATGGCTTTGCAGTTGGTCAGGAAGC
                      ____________________________________________________________
consensus             TCAGATACCATGGTGCTTTTGACTTTTTCGTTGTCATGGCTTTGCAGTTGGTCAGGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H20+           TTGGGATTGGATCCGGTGTTGCTTTTGACTTCTTCATTTTCATGGCTTTGCAGTTGGTCA
                      ____________________________________________________________
consensus             TTGGGATTGGATCCGGTGTTGCTTTTGACTTCTTCATTTTCATGGCTTTGCAGTTGGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H20+           GAATGCTTGGAATTGGACCCGGTGCTGCTTTTGACTTCTTTGTTTTCACTTAGTAGTCGG
                      ____________________________________________________________
consensus             GAATGCTTGGAATTGGACCCGGTGCTGCTTTTGACTTCTTTGTTTTCACTTAGTAGTCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H20+           TCATGAAGCTCTTTTGCAGATTTAGCTGCACTATTACTCACGCGAAACAGTTCCATCACT
                      ____________________________________________________________
consensus             TCATGAAGCTCTTTTGCAGATTTAGCTGCACTATTACTCACGCGAAACAGTTCCATCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H20+           TTAAGGCTGTATACCTTGGCAAAGGCAGCTGGGATTTCTTGTAGTGCAGTGCAATTCCTG
                      ____________________________________________________________
consensus             TTAAGGCTGTATACCTTGGCAAAGGCAGCTGGGATTTCTTGTAGTGCAGTGCAATTCCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H20+           AGGACCAGACGTTCTAAAGCAGGAAAGTTTTTTTCAACAACTTTCCAAGTTACTAAGTTT
JMFS088D10+                          AAAGCAGGAAAGTTTTTTTCAACAACTTTCCAAGTTACTAAGTTT
                      ____________________________________________________________
consensus             AGGACCAGACGTTCTAAAGCAGGAAAGTTTTTTTCAACAACTTTCCAAGTTACTAAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H20+           GTCCTCCCAATCCGCAAATACTGGAGTTGTTTGAAAACAACTTCTCTGTTTAGATCCCAA
JMFS088D10+           GTCCTCCCAATCCGCAAATACTGGAGTTGTTTGAAAACAACTTCTCTGTTTAGATCCCAA
                      ____________________________________________________________
consensus             GTCCTCCCAATCCGCAAATACTGGAGTTGTTTGAAAACAACTTCTCTGTTTAGATCCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026H20+           CGTTCCCCCTTGCAACAATTTTCTTCCAACT                             
JMFS088D10+           CGTTCCCCCTTGCAACAATTTTCTTCCAACTTCAGCATCTCAAGCTTGTCCAGTGATGTC
                      ____________________________________________________________
consensus             CGTTCCCCCTTGCAACAATTTTCTTCCAACTTCAGCATCTCAAGCTTGTCCAGTGATGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS088D10+           AATTTACTCATATCATCCCACTTAAACAATGTATTAGATAGAGTCAAATTTCTGATCTTG
                      ____________________________________________________________
consensus             AATTTACTCATATCATCCCACTTAAACAATGTATTAGATAGAGTCAAATTTCTGATCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS088D10+           AGTGGAAACTTGTCATGCGGCATCGTTAACTCTTTGTTGGACAGGCCATGGAGTTTCAAG
                      ____________________________________________________________
consensus             AGTGGAAACTTGTCATGCGGCATCGTTAACTCTTTGTTGGACAGGCCATGGAGTTTCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS088D10+           TTTTCAAGGCAATCAAGCATTTGAAGATTTTTGAACAAAGAAGTTCCTGGTTGCTTTTCC
                      ____________________________________________________________
consensus             TTTTCAAGGCAATCAAGCATTTGAAGATTTTTGAACAAAGAAGTTCCTGGTTGCTTTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS088D10+           TCCAAAAGCTCTTCTAAATTCCCACTAATATTCAATGTTTGGAGTTTGGTGGTCTTGCTG
                      ____________________________________________________________
consensus             TCCAAAAGCTCTTCTAAATTCCCACTAATATTCAATGTTTGGAGTTTGGTGGTCTTGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS088D10+           ATAATCTCTTCCTTGCAACATGCCGGTGATATGGAACAAAGTGTGCGGATGTCTAAGTTT
                      ____________________________________________________________
consensus             ATAATCTCTTCCTTGCAACATGCCGGTGATATGGAACAAAGTGTGCGGATGTCTAAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS088D10+           TCTAAGCTGTAGTTTTTGGGAGGAGAGGGCAACTGAGTAGAAGTGTTGGTGTGCACATGC
                      ____________________________________________________________
consensus             TCTAAGCTGTAGTTTTTGGGAGGAGAGGGCAACTGAGTAGAAGTGTTGGTGTGCACATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS088D10+           CTTAACTTTTTCATGTTCCATATACCTCCCTCAATTTGTAGTGTATGTTTCGTGGTTCTA
                      ____________________________________________________________
consensus             CTTAACTTTTTCATGTTCCATATACCTCCCTCAATTTGTAGTGTATGTTTCGTGGTTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS088D10+           AATACAAGAGTCTCCAAGTCACGAAGCCTTCTGAATTGCTTGGGCAGGAGATCAATGTCA
                      ____________________________________________________________
consensus             AATACAAGAGTCTCCAAGTCACGAAGCCTTCTGAATTGCTTGGGCAGGAGATCAATGTCA