Contig 003424:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS015E05Sequence590003424 (3)ref|XP_009605140.1|8e-115PREDICTED: histidine kinase 2 isoform X1 [Nicotiana tomentosiformis]
JMFS075A08Sequence622003424 (3)ref|XP_009605141.1|5e-120PREDICTED: histidine kinase 2 isoform X2 [Nicotiana tomentosiformis]
JMFS082B03Sequence617003424 (3)ref|XP_009760175.1|1e-94PREDICTED: histidine kinase 2 isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS075A08+                                                   ATCGAGATTTGTATCCATGA
                      ____________________________________________________________
consensus                                                     ATCGAGATTTGTATCCATGA
 
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JMFS075A08+           GCATCTGAAGCATGCCTAAAACACCATTCATTGGGGTCCTGATTTCGTGAGAAACTGTAG
                      ____________________________________________________________
consensus             GCATCTGAAGCATGCCTAAAACACCATTCATTGGGGTCCTGATTTCGTGAGAAACTGTAG
 
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JMFS075A08+           CAAGAAACTGGGATTTTGCAATATCTGCAGCCTCAGCACGATGTTTGAGATTCATCATCT
                      ____________________________________________________________
consensus             CAAGAAACTGGGATTTTGCAATATCTGCAGCCTCAGCACGATGTTTGAGATTCATCATCT
 
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JMFS075A08+           TCTGATAATCATGCTCAAATTTGGCAATCCGAGCTATTGCAGCGTGAAATATATGACCAA
                      ____________________________________________________________
consensus             TCTGATAATCATGCTCAAATTTGGCAATCCGAGCTATTGCAGCGTGAAATATATGACCAA
 
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JMFS075A08+           CAAGCAAGGTGATTACAAGAACACCGATCGAAGCTCCTATTGCTATCCAGGGCGGGGGAG
JMFS015E05+             AGCAAGGTGATTACAAGAACACCGATCGAAGCTCCTATTGCTATCCAGGGCGGGGGAG
                      ____________________________________________________________
consensus             CAAGCAAGGTGATTACAAGAACACCGATCGAAGCTCCTATTGCTATCCAGGGCGGGGGAG
 
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JMFS075A08+           GTTTTTGCTTGAACCTGCAATGCATCTCATGCTTCCGAGCAGGATCTCCAAAGTCAAGGT
JMFS015E05+           GTTTTTGCTTGAACCTGCAATGCATCTCATGCTTCCGAGCAGGATCTCCAAAGTCAAGGT
                      ____________________________________________________________
consensus             GTTTTTGCTTGAACCTGCAATGCATCTCATGCTTCCGAGCAGGATCTCCAAAGTCAAGGT
 
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JMFS075A08+           TGCTAACATGCAATAATTCTGTCTCGGTCTCATCTGTACCGTACATTTTAATTGGAGAAT
JMFS015E05+           TGCTAACATGCAATAATTCTGTCTCGGTCTCATCTGTACCGTACATTTTAATTGGAGAAT
                      ____________________________________________________________
consensus             TGCTAACATGCAATAATTCTGTCTCGGTCTCATCTGTACCGTACATTTTAATTGGAGAAT
 
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JMFS075A08+           ACGTGTTCGTTGTATCATAAACATTTACAACAATAGTGTGTTTGCTCGCAAGTTGGTGAA
JMFS015E05+           ACGTGTTCGTTGTATCATAAACATTTACAACAATAGTGTGTTTGCTCGCAAGTTGGTGAA
                      ____________________________________________________________
consensus             ACGTGTTCGTTGTATCATAAACATTTACAACAATAGTGTGTTTGCTCGCAAGTTGGTGAA
 
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JMFS075A08+           GAAGCTTCTCGACTAACGAGGGGACATCGTATGATGCACCAATATACCCGACAGTAGCAT
JMFS015E05+           GAAGCTTCTCGACTAACGAGGGGACATCGTATGATGCACCAATATACCCGACAGTAGCAT
JMFS082B03+                                                      ATACCCGACAGTAGCAT
                      ____________________________________________________________
consensus             GAAGCTTCTCGACTAACGAGGGGACATCGTATGATGCACCAATATACCCGACAGTAGCAT
 
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JMFS075A08+           TAATACGTTGATCTGGGGTAGCATCGGGAGCAAGATGAGTGTTATATACAGCAAACGTAA
JMFS015E05+           TAATACGTTGATCTGGGGTAGCATCGGGAGCAAGATGAGTGTTATATACAGCAAACGTAA
JMFS082B03+           TAATACGTTGATCTGGGGTAGCATCGGGAGCAAGATGAGTGTTATATACAGCAAACGTAA
                      ____________________________________________________________
consensus             TAATACGTTGATCTGGGGTAGCATCGGGAGCAAGATGAGTGTTATATACAGCAAACGTAA
 
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JMFS075A08+           GTACTACACCCAAGTTATTGGACTTCAATAACTTAAAAGGCGATGTCAAGACTCCCTTCC
JMFS015E05+           GTACTACACCCAAGTTATTGGACTTCAATAACTTAAAAGGCGATGTCAAGACTCCCTTCC
JMFS082B03+           GTACTACACCCAAGTTATTGGACTTCAATAACTTAAAAGGCGATGTCAAGACTCCCTTCC
                      ____________________________________________________________
consensus             GTACTACACCCAAGTTATTGGACTTCAATAACTTAAAAGGCGATGTCAAGACTCCCTTCC
 
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JMFS075A08+           CA                                                          
JMFS015E05+           CAGATGCCCTTGCCCGCAATATGTTTTCACGGTCTTCCTTTCCAGACATCATATCAATCG
JMFS082B03+           CAGATGCCCTTGCCCGCAATATGTTTTCACGGTCTTCCTTTCCAGACATCATATCAATCG
                      ____________________________________________________________
consensus             CAGATGCCCTTGCCCGCAATATGTTTTCACGGTCTTCCTTTCCAGACATCATATCAATCG
 
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JMFS015E05+           AGACAATATGGGAGACAGTTTGTTGAGAAAATATGACTGGCGCATATTCATCTTTATCAG
JMFS082B03+           AGACAATATGGGAGACAGTTTGTTGAGAAAATATGACTGGCGCATATTCATCTTTATCAG
                      ____________________________________________________________
consensus             AGACAATATGGGAGACAGTTTGTTGAGAAAATATGACTGGCGCATATTCATCTTTATCAG
 
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JMFS015E05+           GAGCACGATCCAAATTCCCAGGCATATATTCTTGGGCCAAAGTTTGATCCTC        
JMFS082B03+           GAGCACGATCCAAATTCCCAGGCATATATTCTTGGGCCAAAGTTTGATCCTCAGATTCCA
                      ____________________________________________________________
consensus             GAGCACGATCCAAATTCCCAGGCATATATTCTTGGGCCAAAGTTTGATCCTCAGATTCCA
 
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JMFS082B03+           TTTTCTTAATTGCCCATCCATGTTGCCTCTCAAAATTTTCTCTTTCTGAGTGGAGAACCC
                      ____________________________________________________________
consensus             TTTTCTTAATTGCCCATCCATGTTGCCTCTCAAAATTTTCTCTTTCTGAGTGGAGAACCC
 
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JMFS082B03+           TTAGAGCATAGGCAACACCGCTTGTGAGTGGCCTCTCGAAAGCTGTTCTCTCAGTGTATT
                      ____________________________________________________________
consensus             TTAGAGCATAGGCAACACCGCTTGTGAGTGGCCTCTCGAAAGCTGTTCTCTCAGTGTATT
 
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JMFS082B03+           CTTCAAAAGTTTTCTGCAACTTGTAAGGAAGCAATATCAGGGTCGGGTATTATAGCATGG
                      ____________________________________________________________
consensus             CTTCAAAAGTTTTCTGCAACTTGTAAGGAAGCAATATCAGGGTCGGGTATTATAGCATGG
 
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JMFS082B03+           AAAATAATCAAATATACTCTTTGCAGCCCCGAAGCTAATGAAGAACCAACATCACCTGAT
                      ____________________________________________________________
consensus             AAAATAATCAAATATACTCTTTGCAGCCCCGAAGCTAATGAAGAACCAACATCACCTGAT
 
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JMFS082B03+           CTATAGCCGAAGGTTGCTTTCCATGGTGAAAGGTGGAGACAAGAATAGCCAAGGCATGAA
                      ____________________________________________________________
consensus             CTATAGCCGAAGGTTGCTTTCCATGGTGAAAGGTGGAGACAAGAATAGCCAAGGCATGAA