Contig 003422:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS079D12Sequence601003422 (2)ref|XP_009770121.1|8e-25PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Ni
JMFS133G10Sequence646003422 (2)ref|XP_009770121.1|1e-24PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Ni

Alignment

This contig is upended


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JMFS133G10+                         TGTTCATCATCAGACTCTATTTCAATGCTTTTTGGCAACTGCTCTT
JMFS079D12+                                                                      T
                      ____________________________________________________________
consensus                           TGTTCATCATCAGACTCTATTTCAATGCTTTTTGGCAACTGCTCTT
 
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JMFS133G10+           GAACGATTAGGTCGTAATGCTGCACGGCGAGGACGCAGACCTGCACGTCGAGGTGTCATT
JMFS079D12+           GAACGATTAGGTCGTAATGCTGCACGGCGAGGACGCAGACCTGCACGTCGAGGTGTCATT
                      ____________________________________________________________
consensus             GAACGATTAGGTCGTAATGCTGCACGGCGAGGACGCAGACCTGCACGTCGAGGTGTCATT
 
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JMFS133G10+           TCATCTTGAGTTGCACTGTTATTATCAATTCGGTTCCTGGAACTCCCATATTTTGGGCTC
JMFS079D12+           TCATCTTGAGTTGCACTGTTATTATCAATTCGGTTCCTGGAACTCCCATATTTTGGGCTC
                      ____________________________________________________________
consensus             TCATCTTGAGTTGCACTGTTATTATCAATTCGGTTCCTGGAACTCCCATATTTTGGGCTC
 
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JMFS133G10+           ATTAGGTCATTGTCCTCTGATCCAGTACTATCTGTGTAATCTTCAAGATTTACAGACATC
JMFS079D12+           ATTAGGTCATTGTCCTCTGATCCAGTACTATCTGTGTAATCTTCAAGATTTACAGACATC
                      ____________________________________________________________
consensus             ATTAGGTCATTGTCCTCTGATCCAGTACTATCTGTGTAATCTTCAAGATTTACAGACATC
 
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JMFS133G10+           CTCCTCTTTCTAGTAGAGCGACGAAGAGTGGTCGTAACTGAATTTGTTGTTGCTTTTCGC
JMFS079D12+           CTCCTCTTTCTAGTAGAGCGACGAAGAGTGGTCGTAACTGAATTTGTTGTTGCTTTTCGC
                      ____________________________________________________________
consensus             CTCCTCTTTCTAGTAGAGCGACGAAGAGTGGTCGTAACTGAATTTGTTGTTGCTTTTCGC
 
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JMFS133G10+           ACTGGTCGATTACCCAACATCTTTGCAATATGAGAAGCTGCCGTCTTCCTTTTGGTCTTT
JMFS079D12+           ACTGGTCGATTACCCAACATCTTTGCAATATGAGAAGCTGCCGTCTTCCTTTTGGTCTTT
                      ____________________________________________________________
consensus             ACTGGTCGATTACCCAACATCTTTGCAATATGAGAAGCTGCCGTCTTCCTTTTGGTCTTT
 
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JMFS133G10+           CCTGATTTTCCTCTTCGAGTCTCCATATAATACAGAAATGGGCGACCATTGCCATATGGT
JMFS079D12+           CCTGATTTTCCTCTTCGAGTCTCCATATAATACAGAAATGGGCGACCATTGCCATATGGT
                      ____________________________________________________________
consensus             CCTGATTTTCCTCTTCGAGTCTCCATATAATACAGAAATGGGCGACCATTGCCATATGGT
 
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JMFS133G10+           TTTGGTCTTCTCCTGAGCCTGTCACTTGTACGAACTGGCCTAGGGTCATCTTCGTCTGCT
JMFS079D12+           TTTGGTCTTCTCCTGAGCCTGTCACTTGTACGAACTGGCCTAGGGTCATCTTCGTCTGCT
                      ____________________________________________________________
consensus             TTTGGTCTTCTCCTGAGCCTGTCACTTGTACGAACTGGCCTAGGGTCATCTTCGTCTGCT
 
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JMFS133G10+           TGGCTAGAGCGTTTTGGATACATTCAGAAAGGGAGAAACAGCAGAACCTAACAAAGTCAG
JMFS079D12+           TGGCTAGAGCGTTTTGGATACATTCAGAAAGGGAGAAACAGCAGAACCTAACAAAGTCAG
                      ____________________________________________________________
consensus             TGGCTAGAGCGTTTTGGATACATTCAGAAAGGGAGAAACAGCAGAACCTAACAAAGTCAG
 
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JMFS133G10+           AGAGCACGCGCGCGGAGATATATAGTCCTATTCAAGAGACTCGATTCAATGAGATAGCTC
JMFS079D12+           AGAGCACGCGCGCGGAGATATATAGTCCTATTCAAGAGACTCGATTCAATGAGATAGCTC
                      ____________________________________________________________
consensus             AGAGCACGCGCGCGGAGATATATAGTCCTATTCAAGAGACTCGATTCAATGAGATAGCTC
 
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JMFS133G10+           CGGGAAATCGTCGCTGGTCGCCGGAGAAGTCGTCCGAGTCGAAGAACATGCCTGAGAGAA
JMFS079D12+           CGGGAAATCGTCGCTGGTCGCCGGAGAAGTCGTCCGAGTCGAAGAACATGCCTGAGAGAA
                      ____________________________________________________________
consensus             CGGGAAATCGTCGCTGGTCGCCGGAGAAGTCGTCCGAGTCGAAGAACATGCCTGAGAGAA