| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN008M07 | Sequence | 580 | 003421 (8) | ref|XP_009776303.1| | 6e-73 | PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana sylve | |||||
| JMFS077B01 | Sequence | 630 | 003421 (8) | ref|XP_009776303.1| | 1e-54 | PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana sylve | |||||
| JMSF002P03 | Sequence | 296 | 000968 (6) | gb|KCW54638.1| | 2e-19 | hypothetical protein EUGRSUZ_I00580 [Eucalyptus grandis] | 692 | 003421 (8) | ref|XP_009776303.1| | 4e-81 | PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana sylve |
| JMSF006J10 | Sequence | 416 | 003421 (8) | gb|ABR25558.1| | 3e-20 | serine hydroxymethyltransferase mitochondrial precursor [Oryza sativa Indica Gr | |||||
| JMSF041O24 | Sequence | 800 | 000968 (6) | gb|KCW54638.1| | 9e-145 | hypothetical protein EUGRSUZ_I00580 [Eucalyptus grandis] | 747 | 003421 (8) | ref|XP_009776303.1| | 2e-103 | PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana sylve |
| JMSF042O11 | Sequence | 718 | 000968 (6) | gb|KCW54638.1| | 1e-128 | hypothetical protein EUGRSUZ_I00580 [Eucalyptus grandis] | 495 | 003421 (8) | ref|XP_009776303.1| | 1e-25 | PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana sylve |
| JMSF045P02 | Sequence | 746 | 000968 (6) | gb|KCW54638.1| | 1e-125 | hypothetical protein EUGRSUZ_I00580 [Eucalyptus grandis] | 698 | 003421 (8) | ref|XP_009597687.1| | 2e-55 | PREDICTED: serine hydroxymethyltransferase, mitochondrial isoform X2 [Nicotiana |
| JMSF047O08 | Sequence | 668 | 000968 (6) | gb|KCW54638.1| | 3e-101 | hypothetical protein EUGRSUZ_I00580 [Eucalyptus grandis] | 766 | 003421 (8) | ref|XP_009776303.1| | 5e-101 | PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana sylve |
This contig is upended
. : . : . : . : . : . :
rJMSF047O08+ TGAAGCAG
____________________________________________________________
consensus TGAAGCAG
. : . : . : . : . : . :
rJMSF041O24+ TACCAAGAGCAAGTCCTCAGTAACTGCTCAAAATTTG
rJMSF047O08+ GCAACGACTCCCGAATACAGAGCTACCAAGAGCAAGTCCTCAGTAACTGCTCAAAATTTG
____________________________________________________________
consensus GCAACGACTCCCGAATACAGAGCTACCAAGAGCAAGTCCTCAGTAACTGCTCAAAATTTG
. : . : . : . : . : . :
rJMSF041O24+ CACAGACTTTGGTTGAGAAGGGCTATGAACTGGTTTCTGGTGGAACTGAGAACCATTTGG
rJMSF047O08+ CACAGACTTTGGTTGAGAAGGGCTATGAACTGGTTTCTGGTGGAACTGAGAACCATTTGG
____________________________________________________________
consensus CACAGACTTTGGTTGAGAAGGGCTATGAACTGGTTTCTGGTGGAACTGAGAACCATTTGG
. : . : . : . : . : . :
rJMSF041O24+ TGTTGGTGAATCTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAAGGTGCTGGAAT
JMFN008M07- AAACAAGGGAATTGATGGTTCCAGAGTTGAAAAGGTGCTGGAAT
rJMSF047O08+ TGTTGGTGAATCTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAAGGTGCTGGAAT
____________________________________________________________
consensus TGTTGGTGAATCTGAAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAAGGTGCTGGAAT
. : . : . : . : . : . :
rJMSF041O24+ CTGTCCACATTGCAGCCAACAAGAACACAGTTCCCGGGGACGTTTCTGCAATGGTTCCTG
JMFN008M07- CTGTCCACATTGCAGCCAACAAGAACACAGTTCCCGGGGACGTTTCTGCAATGGTTCCTG
rJMSF047O08+ CTGTCCACATTGCAGCCAACAAGAACACAGTTCCCGGGGACGTTTCTGCAATGGTTCCTG
JMFS077B01+ AGTTCCCGGGGACGTTTCTGCAATGGTTCCTG
____________________________________________________________
consensus CTGTCCACATTGCAGCCAACAAGAACACAGTTCCCGGGGACGTTTCTGCAATGGTTCCTG
. : . : . : . : . : . :
rJMSF041O24+ GTGGCATTAGAATGGGAACTCCTGCTCTTACCTCCAGGGGATTCGTCGAGGAAGACTTTG
JMFN008M07- GTGGCATTAGAATGGGAACTCCTGCTCTTACCTCCAGGGGATTCGTCGAGGAAGACTTTG
rJMSF047O08+ GTGGCATTAGAATGGGAACTCCTGCTCTTACCTCCAGGGGATTCGTCGAGGAAGACTTTG
rJMSF002P03+ GGAACTCCTGCTCTTACCTCCAGGGGATTCGTCGAGGAAGACTTTG
rJMSF045P02+ GGAACTCCTGCTCTTACCTCCAGGGGATTCGTCGAGGAAGACTTTG
rJMSF042O11+ GGATTCGTCGAGGAAGACTTTG
JMFS077B01+ GTGGCATTAGAATGGGAACTCCTGCTCTTACCTCCAGGGGATTCGTCGAGGAAGACTTTG
____________________________________________________________
consensus GTGGCATTAGAATGGGAACTCCTGCTCTTACCTCCAGGGGATTCGTCGAGGAAGACTTTG
. : . : . : . : . : . :
rJMSF041O24+ TGAAAGTTGCAGAATACTTCGACGCAGCAGTGAAGTTATCTGTCAAAATAAAGGCTGCAA
JMFN008M07- TGAAAGTTGCAGAATACTTCGACGCAGCAGTGAAGTTATCTGTCAAAATAAAGGCTGCAA
rJMSF006J10+ CTGCAA
rJMSF047O08+ TGAAAGTTGCAGAATACTTCGACGCAGCAGTGAAGTTATCTGTCAAAATAAAGGCTGCAA
rJMSF002P03+ TGAAAGTTGCAGAATACTTCGACGCAGCAGTGAAGTTATCTGTCAAAATAAAGGCTGCAA
rJMSF045P02+ TGAAAGTTGCAGAATACTTCGACGCAGCAGTGAAGTTATCTGTCAAAATAAAGGCTGCAA
rJMSF042O11+ TGAAAGTTGCAGAATACTTCGACGCAGCAGTG-AGTTATCTGTCAAAATAAAGGCTGCAA
JMFS077B01+ TGAAAGTTGCAGAATACTTCGACGCAGCAGTGAAGTTATCTGTCAAAATAAAGGCTGCAA
____________________________________________________________
consensus TGAAAGTTGCAGAATACTTCGACGCAGCAGTGAAGTTATCTGTCAAAATAAAGGCTGCAA
. : . : . : . : . : . :
rJMSF041O24+ CTCAAGGCACGAAATTGAAAGAATTTGTGGCCACCCTGCAGTCCAGTGATGCAATCCAGG
JMFN008M07- CTCAAGGCACGAAATTGAAAGAATTTGTGGCCACCCTGCAGTCCAGTGATGCAATCCAGG
rJMSF006J10+ CTCAAGGCACGAAATNGAAAGAATTTGTGGCCCCCCTGCAGTCCAGTGATGCAATCCAGG
rJMSF047O08+ CTCAAGGCACGAAATTGAAAGAATTTGTGGCCACCCTGCAGTCCAGTGATGCAATCCAGG
rJMSF002P03+ CTCAAGGCACGAAATTGAAAGAATTTGTGGCCACCCTGCAGTCCAGTGATGCAATCCAGG
rJMSF045P02+ CTCAAGGCACGAAATTGAAAGAATTTGTGGCCACCCTGCAGTCCAGTGATGCAATCCAGG
rJMSF042O11+ CTCAAGGCACGAAATTGAAAGAATTTGTGGCCACCCTGCAGTCCAGTGATGCAATCCAGG
JMFS077B01+ CTCAAGGCACGAAATTGAAAGAATTTGTGGCCACCCTGCAGTCCAGTGATGCAATCCAGG
____________________________________________________________
consensus CTCAAGGCACGAAATTGAAAGAATTTGTGGCCACCCTGCAGTCCAGTGATGCAATCCAGG
. : . : . : . : . : . :
rJMSF041O24+ CTGAGATTGCAAAGCTGCGCCATGATGTGGAGGAGTATGCAAAGCAGTTCCCCACGATCG
JMFN008M07- CTGAGATTGCAAAGCTGCGCCATGATGTGGAGGAGTATGCAAAGCAGTTCCCCACGATCG
rJMSF006J10+ CTGAGATTGCAAAGCTGCGCCATGATGTGGAGGAGTATGCAAAGCAGTTCCCCACGATCG
rJMSF047O08+ CTGAGATTGCAAAGCTGCGCCATGATGTGGAGGAGTATGCAAAGCAGTTCCCCACGATCG
rJMSF002P03+ CTGAGATTGCAAAGCTGCGCCATGATGTGGAGGAGTATGCAAAGCAGTTCCCCACGATCG
rJMSF045P02+ CTGAGATTGCAAAGCTGCGCCATGATGTGGAGGAGTATGCAAAGCAGTTCCCCACGATCG
rJMSF042O11+ CTGAGATTGCAAAGCTGCGCCATGATGTGGAGGAGTATGCAAAGCAGTTCCCCACGATCG
JMFS077B01+ CTGAGATTGCAAAGCTGCGCCATGATGTGGAGGAGTATGCAAAGCAGTTCCCCACGATCG
____________________________________________________________
consensus CTGAGATTGCAAAGCTGCGCCATGATGTGGAGGAGTATGCAAAGCAGTTCCCCACGATCG
. : . : . : . : . : . :
rJMSF041O24+ GGTTCGAGAAACACACCATGAAGTACAAGAACTGAGAACATCATGCGCCGTCCCAGGTAG
JMFN008M07- GGTTCGAGAAACACACCATGAAGTACAAGAACTGAGAACATCATGCGCCGTCCCAGGT
rJMSF006J10+ GGTTCGAGAAACACACCATGAAGTACAAGAACTGAGAACATCATGCGCCGTCCCAGGTAG
rJMSF047O08+ GGTTCGAGAAACACACCATGAAGTACAAGAACTGAGAACATCATGCGCCGTCCCAGGTAG
rJMSF002P03+ GGTTCGAGAAACACACCATGAAGTACAAGAACTGAGAACATCATGCGCCGTCCCAGGTAG
rJMSF045P02+ GGTTCGAGAAACACACCATGAAGTACAAGAACTGAGAACATCATGCGCCGTCCCAGGTAG
rJMSF042O11+ GGTTCGAGAAACACACCATGAAGTACAAGAACTGAGAACATCATGCGCCGTCCCAGGTAG
JMFS077B01+ GGTTCGAGAAACACACCATGAAGTACAAGAACTGAGAACATCATGCGCCGTCCCAGGTAG
____________________________________________________________
consensus GGTTCGAGAAACACACCATGAAGTACAAGAACTGAGAACATCATGCGCCGTCCCAGGTAG
. : . : . : . : . : . :
rJMSF041O24+ ATTCCATGATGTTCTTTAAGGAGAATGCTGTGTTGTTGGTGACTAGTTCCAACCCAATCG
rJMSF006J10+ ATTCCATGATGTTCTTTAAGGAGAATGCTGTGTTGTTGGTGACTAGTTCCAACCCAATCG
rJMSF047O08+ ATTCCATGATGTTCTTTAAGGAGAATGCTGTGTTGTTGGTGACTAGTTCCAACCCAATCG
rJMSF002P03+ ATTCCATGATGTTCTTTAAGGAGAATGCTGTGTTGTTGGTGACTAGTTCCAACCCAATCG
rJMSF045P02+ ATTCCATGATGTTCTTTAAGGAGAATGCTGTGTTGTTGGTGACTAGTTCCAACCCAATCG
rJMSF042O11+ ATTCCATGATGTTCTTTAAGGAGAATGCTGTGTTGTTGGTGACTAGTTCCAACCCAATCG
JMFS077B01+ ATTCCATGATGTTCTTTAAGGAGAATGCTGTGTTGTTGGTGACTAGTTCCAACCCAATCG
____________________________________________________________
consensus ATTCCATGATGTTCTTTAAGGAGAATGCTGTGTTGTTGGTGACTAGTTCCAACCCAATCG
. : . : . : . : . : . :
rJMSF041O24+ TTTCTTATCAAAGTTCGTGTCTTTAAAGGTTGCAGGCAGTGAGTGCATCAATGTCATAAA
rJMSF006J10+ TTTCTTATCAAAGTTCGTGTCTTTAAAGGTTGCAGGCAGTGAGTGCATCAATGTCATAAA
rJMSF047O08+ TTTCTTATCAAAGTTCGTGTCTTTAAAGGTTGCAGGCAGTGAGTGCATCAATGTCATAAA
rJMSF002P03+ TTTCTTATCAAAGTTCGTGTCTTTAAAGGTTGCAGGCAGTGAGTGCATCAATGTCATAAA
rJMSF045P02+ TTTCTTATCAAAGTTCGTGTCTTTAAAGGTTGCAGGCAGTGAGTGCATCAATGTCATAAA
rJMSF042O11+ TTTCTTATCAAAGTTCGTGTCTTTAAAGGTTGCAGGCAGTGAGTGCATCAATGTCATAAA
JMFS077B01+ TTTCTTATCAAAGTTCGTGTCTTTAAAGGTTGCAGGCAGTGAGTGCATCAATGTCATAAA
____________________________________________________________
consensus TTTCTTATCAAAGTTCGTGTCTTTAAAGGTTGCAGGCAGTGAGTGCATCAATGTCATAAA
. : . : . : . : . : . :
rJMSF041O24+ GGTTAA-CAGGGAAGAAATCCAGTTA-CTGGTTTATTATTATGTAAAATCAATGCTGAAG
rJMSF006J10+ GGTTAACCAGGGAAGAAATCCAGTTATCTGGTTTATTATTATGTAAAATCAATGCTGAAG
rJMSF047O08+ GGTTAA-CAGGGAAGAAATCCAGTTA-CTGGTTTATTATTATGTAAAATCAATGCTGAAG
rJMSF002P03+ GGTTAA-CAGGGAAGAAATCCAGTTA-CTGGTTTATTATTATGTAAAATCAATGCTGAAG
rJMSF045P02+ GGTTAA-CAGGGAAGAAATCCAGTTA-CTGGTTTATTATTATGTAAAATCAATGCTGAAG
rJMSF042O11+ GGTTAA-CAGGGAAGAAATCCAGTTA-CTGGTTTATTATTATGTAAAATCAATGCTGAAG
JMFS077B01+ GGTTAA-CAGGGAAGAAATCCAGTTA-CTGGTTTATTATTATGTAAAATCAATGCTGAAG
____________________________________________________________
consensus GGTTAA-CAGGGAAGAAATCCAGTTA-CTGGTTTATTATTATGTAAAATCAATGCTGAAG
. : . : . : . : . : . :
rJMSF041O24+ ATTTTAGCTTCCTTGCTTGCTAATGTATACACCCATCATG
rJMSF006J10+ ATTTTAGCTTCCTTGCTTGCTAATGTATACACCCATCAT
rJMSF047O08+ ATTTTAGCTTCCTTGCTTGCTAATGTATACACCCATCATG
rJMSF002P03+ ATTTTAGCTTCCTTGCTTGCTAATGTATACACCCATCATGTACACAACCTCAGATCCATG
rJMSF045P02+ ATTTTAGCTTCCTTGCTTGCTAATGTATACACCCATCAT
rJMSF042O11+ ATTTTAGCTTCCTTGCTTGCTAATGTATACACCCATCATGTACACAACCTCAGATC
JMFS077B01+ ATTTTAGCTTCCTTGCTTGCTAATGTATACACCCATCATGTACACAACCTCAGATCCATG
____________________________________________________________
consensus ATTTTAGCTTCCTTGCTTGCTAATGTATACACCCATCATGTACACAACCTCAGATCCATG
. : . : . : . : . : . :
rJMSF002P03+ AATAATGCCACAATTC
JMFS077B01+ AATAATGCCACAATTCTATATTTTGCTTCAAAAAAAAAAAAAAAAAACTGAACTAGTTCC
____________________________________________________________
consensus AATAATGCCACAATTCTATATTTTGCTTCAAAAAAAAAAAAAAAAAACTGAACTAGTTCC