Contig 003416:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015F03Sequence498003416 (5)
JMCP016B08Sequence498003416 (5)
JMFF001F06Sequence265004619 (3)ref|XP_009626852.1|7e-13PREDICTED: F-box/kelch-repeat protein SKIP11-like [Nicotiana tomentosiformis] r699003416 (5)emb|CDP00309.1|8e-51unnamed protein product [Coffea canephora]
JMFF040C03Sequence523004619 (3)ref|XP_009778034.1|3e-05PREDICTED: F-box/kelch-repeat protein SKIP11-like [Nicotiana sylvestris] ref|XP710003416 (5)ref|XP_010091219.1|1e-34F-box/kelch-repeat protein SKIP11 [Morus notabilis] gb|EXB43474.1| F-box/kelch-r
JMFS071A05Sequence527003416 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF001F06+ GACCAATTGTACGCTGCCGATTATGCTGAAATGGTAGTGAGGA
                      ____________________________________________________________
consensus GACCAATTGTACGCTGCCGATTATGCTGAAATGGTAGTGAGGA
 
. : . : . : . : . : . :
rJMFF001F06+ AGTACGACAAGGATAACCGAGTTTGGTTCACGATCGGGAGATTGCCGGAACGTGCAAATT
rJMFF040C03+ GCAAATT
                      ____________________________________________________________
consensus AGTACGACAAGGATAACCGAGTTTGGTTCACGATCGGGAGATTGCCGGAACGTGCAAATT
 
. : . : . : . : . : . :
rJMFF001F06+ CCATGAACGGTTGGGGCTTGGCTTTTAGGGCATGTGGCGATAAGCTTATCGTGATCGGGG
rJMFF040C03+ CCATGAACGGTTGGGGCTTGGCTTTTAGGGCATGTGGCGATAAGCTTATCGTGATCGGGG
                      ____________________________________________________________
consensus CCATGAACGGTTGGGGCTTGGCTTTTAGGGCATGTGGCGATAAGCTTATCGTGATCGGGG
 
. : . : . : . : . : . :
rJMFF001F06+ GACCTAGGGCTACAGGTCCCGGGTTTATCGAAGTGAACTCGTGGGTCCCGGGCGAAGGAC
rJMFF040C03+ GACCTAGGGCTACAGGTCCCGGGTTTATCGAAGTGAACTCGTGGGTCCCGGGCGAAGGAC
                      ____________________________________________________________
consensus GACCTAGGGCTACAGGTCCCGGGTTTATCGAAGTGAACTCGTGGGTCCCGGGCGAAGGAC
 
. : . : . : . : . : . :
rJMFF001F06+ CGCCCGAGTGGCATTTACTCGGCCGGAAGCAATCGGGTAGCTTCGTCTATAATTGCGCCG
rJMFF040C03+ CGCCCGAGTGGCATTTACTCGGCCGGAAGCAATCGGGTAGCTTCGTCTATAATTGCGCCG
rJMCP016B08- ATTTACTCGGCCGGAAGCAATCGGGTAGCTTCGTCTATAATTGCGCCG
JMCP015F03- ATTTACTCGGCCGGAAGCAATCGGGTAGCTTCGTCTATAATTGCGCCG
                      ____________________________________________________________
consensus CGCCCGAGTGGCATTTACTCGGCCGGAAGCAATCGGGTAGCTTCGTCTATAATTGCGCCG
 
. : . : . : . : . : . :
rJMFF001F06+ TGATGGGTTGCTAAAAAACGTGGTTCTTTGGGTGCTCTTGCTAATGGGTAATCTATCCCG
rJMFF040C03+ TGATGGGTTGCTAAAAAACGTGGTTCTTTGGGTGCTCTTGCTAATGGGTAATCTATCCCG
rJMCP016B08- TGATGGGTTGCTAAAAAACGTGGTTCTTTGGGTGCTCTTGCTAATGGGTAATCTATCCCG
JMCP015F03- TGATGGGTTGCTAAAAAACGTGGTTCTTTGGGTGCTCTTGCTAATGGGTAATCTATCCCG
                      ____________________________________________________________
consensus TGATGGGTTGCTAAAAAACGTGGTTCTTTGGGTGCTCTTGCTAATGGGTAATCTATCCCG
 
. : . : . : . : . : . :
rJMFF001F06+ ACCTTTATTTTCTTTTTTATTCAGTGCATTATTTTTTTTTCCTTTTCTCTGTGGGAGGAT
rJMFF040C03+ ACCTTTATTTTCTTTTTTATTCAGTGCATTATTTTTTTTTCCTTTTCTCTGTGGGAGGAT
rJMCP016B08- ACCTTTATTTTCTTTTTTATTCAGTGCATTATTTTTTTTTCCTTTTCTCTGTGGGAGGAT
JMCP015F03- ACCTTTATTTTCTTTTTTATTCAGTGCATTATTTTTTTTTCCTTTTCTCTGTGGGAGGAT
JMFS071A05+ TTTTTATTCAGTGCATTATTTTTTTTTCCTTTTCTCTGTGGGAGGAT
                      ____________________________________________________________
consensus ACCTTTATTTTCTTTTTTATTCAGTGCATTATTTTTTTTTCCTTTTCTCTGTGGGAGGAT
 
. : . : . : . : . : . :
rJMFF001F06+ ATAGGGAGGAATTATCAACCGACTCAAGATTTGACCGCATATTTCTTCTAAAGGAGTTGT
rJMFF040C03+ ATAGGGAGGAATTATCAACCGACTCAAGATTTGACCGCATATTTCTTCTAAAGGAGTTGT
rJMCP016B08- ATAGGGAGGAATTATCAACCGACTCAAGATTTGACCGCATATTTCTTCTAAAGGAGTTGT
JMCP015F03- ATAGGGAGGAATTATCAACCGACTCAAGATTTGACCGCATATTTCTTCTAAAGGAGTTGT
JMFS071A05+ ATAGGGAGGAATTATCAACCGACTCAAGATTTGACCGCATATTTCTTCTAAAGGAGTTGT
                      ____________________________________________________________
consensus ATAGGGAGGAATTATCAACCGACTCAAGATTTGACCGCATATTTCTTCTAAAGGAGTTGT
 
. : . : . : . : . : . :
rJMFF001F06+ TGAGTATCAAATTTTTTCTGCTTCGACATTTTCATTCATATTGAATGATCTTCCCCCATT
rJMFF040C03+ TGAGTATCAAATTTTTTCTGCTTCGACATTTTCATTCATATTGAATGATCTTCCCCCATT
rJMCP016B08- TGAGTATCAAATTTTTTCTGCTTCGACATTTTCATTCATATTGAATGATCTTCCCCCATT
JMCP015F03- TGAGTATCAAATTTTTTCTGCTTCGACATTTTCATTCATATTGAATGATCTTCCCCCATT
JMFS071A05+ TGAGTATCAAATTTTTTCTGCTTCGACATTTTCATTCATATTGAATGATCTTCCCCCATT
                      ____________________________________________________________
consensus TGAGTATCAAATTTTTTCTGCTTCGACATTTTCATTCATATTGAATGATCTTCCCCCATT
 
. : . : . : . : . : . :
rJMFF001F06+ TGGTTAACATGAAATCTTCAAAGGAGGCCAGCAAAAAATAGCAAAGGGATAGGAAAATAA
rJMFF040C03+ TGGTTAACATGAAATCTTCAAAGGAGGCCAGCAAAAAATAGCAAAGGGATAGGAAAATAA
rJMCP016B08- TGGTTAACATGAAATCTTCAAAGGAGGCCAGCAAAAAATAGCAAAGGGATAGGAAAATAA
JMCP015F03- TGGTTAACATGAAATCTTCAAAGGAGGCCAGCAAAAAATAGCAAAGGGATAGGAAAATAA
JMFS071A05+ TGGTTAACATGAAATCTTCAAAGGAGGCCAGCAAAAAATAGCAAAGGGATAGGAAAATAA
                      ____________________________________________________________
consensus TGGTTAACATGAAATCTTCAAAGGAGGCCAGCAAAAAATAGCAAAGGGATAGGAAAATAA
 
. : . : . : . : . : . :
rJMFF001F06+ CTTCGAGGGTGGGAGCAATACAATACTAGAAATCTCCGATTAGTTTTCGTTGAAGCTTCT
rJMFF040C03+ CTTCGAGGGTGGGAGCAATACAATACTAGAAATCTCCGATTAGTTTTCGTTGAAGCTTCT
rJMCP016B08- CTTCGAGGGTGGGAGCAATACAATACTtctAATCTCCGATTtGTTTTCGTTGAAGCTTCT
JMCP015F03- CTTCGAGGGTGGGAGCAATACAATACTAGAAATCTCCGATTAGTTTTCGTTGAAGCTTCT
JMFS071A05+ CTTCGAGGGTGGGAGCAATACAATACTAGAAATCTCCGATTAGTTTTCGTTGAAGCTTCT
                      ____________________________________________________________
consensus CTTCGAGGGTGGGAGCAATACAATACTAGAAATCTCCGATTAGTTTTCGTTGAAGCTTCT
 
. : . : . : . : . : . :
rJMFF001F06+ CCAAGAAATTGTAGAGCTTAGTTCTCCATTAATGTTCGCTCTTTTCTCTTCCCCCA
rJMFF040C03+ CCAAGAAATTGTAGAGCTTAGTTCTCCATTAATGTTCGCTCTTTTCTCTTCCCCCACC
rJMCP016B08- CCAAGAAATTGTtctGCTTtGTTCTCCATTAATGTTCGCTCTTTTCTCTTCCCCCACCTC
JMCP015F03- CCAAGAAATTGTAGAGCTTAGTTCTCCATTAATGTTCGCTCTTTTCTCTTCCCCCACCTC
JMFS071A05+ CCAAGAAATTGTAGAGCTTAGTTCTCCATTAATGTTCGCTCTTTTCTCTTCCCCCACCTC
                      ____________________________________________________________
consensus CCAAGAAATTGTAGAGCTTAGTTCTCCATTAATGTTCGCTCTTTTCTCTTCCCCCACCTC
 
. : . : . : . : . : . :
rJMCP016B08- TCTTTATTTTTGTCATAGTCGAGAAAACCC
JMCP015F03- TCTTTATTTTTGTCATAGTCGAGAAAACCC
JMFS071A05+ TCTTTATTTTTGTCATAGTCGAGAAAACCCAAAAAAAAAAAAAAAAAACAAAAAATAATT
                      ____________________________________________________________
consensus TCTTTATTTTTGTCATAGTCGAGAAAACCCAAAAAAAAAAAAAAAAAACAAAAAATAATT
 
. : . : . : . : . : . :
JMFS071A05+ AAGGTTCTGCAATCTTCTTCATCAGGAGCATGTCAATGTACTGAACACCTTTGATATTGC
                      ____________________________________________________________
consensus AAGGTTCTGCAATCTTCTTCATCAGGAGCATGTCAATGTACTGAACACCTTTGATATTGC
 
. : . : . : . : . : . :
JMFS071A05+ AATGAATGAGCTCATAGTGAAAAGCTTTCTCTTGAAATTCATTCATGGGAAGCTTGTTGC
                      ____________________________________________________________
consensus AATGAATGAGCTCATAGTGAAAAGCTTTCTCTTGAAATTCATTCATGGGAAGCTTGTTGC