Contig 003411:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS061F09Sequence627003411 (3)gb|KHG01750.1|9e-53Ent-copalyl diphosphate synthase, chloroplastic [Gossypium arboreum]
JMFS109H06Sequence616003411 (3)ref|XP_008350066.1|2e-57PREDICTED: ent-copalyl diphosphate synthase, chloroplastic-like [Malus domestic
JMFS116C02Sequence552003411 (3)ref|XP_008350066.1|3e-38PREDICTED: ent-copalyl diphosphate synthase, chloroplastic-like [Malus domestic

Alignment

This contig is upended


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JMFS109H06+                      ATTTTGGGGGTGCATGTCCCATGATTTTAAGGCGATGACGCAAGCCAAG
JMFS061F09+                                               TTTAAGGCGATGACGCAAGCCAAG
                      ____________________________________________________________
consensus                        ATTTTGGGGGTGCATGTCCCATGATTTTAAGGCGATGACGCAAGCCAAG
 
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JMFS109H06+           GTGTTGAGTATACGGTCGTGAGCCAAGAAGATGAACTGGTCACCCCAGGAACCGTCCGGC
JMFS116C02+                                                           GAACCGTCCGGC
JMFS061F09+           GTGTTGAGTATACGGTCGTGAGCCAAGAAGATGAACTGGTCACCCCAGGAACCGTCCGGC
                      ____________________________________________________________
consensus             GTGTTGAGTATACGGTCGTGAGCCAAGAAGATGAACTGGTCACCCCAGGAACCGTCCGGC
 
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JMFS109H06+           AGCTGGTTGTCGGCGATCCAGTCGAGGGCGGTCGGGAACTGCGGAGATTCGCCGCCGTTG
JMFS116C02+           AGCTGGTTGTCGGCGATCCAGTCGAGGGCGGTCGGGAACTGCGGAGATTCGCCGCCGTTG
JMFS061F09+           AGCTGGTTGTCGGCGATCCAGTCGAGGGCGGTCGGGAACTGCGGAGATTCGCCGCCGTTG
                      ____________________________________________________________
consensus             AGCTGGTTGTCGGCGATCCAGTCGAGGGCGGTCGGGAACTGCGGAGATTCGCCGCCGTTG
 
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JMFS109H06+           ATGTCCTTCACCAGCGCCACCCACGCCGTGTCGTACGCCGACACGGTGATGTCACCGTCG
JMFS116C02+           ATGTCCTTCACCAGCGCCACCCACGCCGTGTCGTACGCCGACACGGTGATGTCACCGTCG
JMFS061F09+           ATGTCCTTCACCAGCGCCACCCACGCCGTGTCGTACGCCGACACGGTGATGTCACCGTCG
                      ____________________________________________________________
consensus             ATGTCCTTCACCAGCGCCACCCACGCCGTGTCGTACGCCGACACGGTGATGTCACCGTCG
 
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JMFS109H06+           TCCATCGACCCTAGCATCGCCCGGACGGTTTCCACTCCTTCCTTTATCTTATTTGATGTA
JMFS116C02+           TCAATCGACCCTAGCATCGCCCGGACGGTTTCCACTCCTTCCTTTATCTTATTTGATGTA
JMFS061F09+           TCCATCGACCCTAGCATCGCCCGGACGGTTTCCACTCCTTCCTTTATCTTATTTGATGTA
                      ____________________________________________________________
consensus             TCCATCGACCCTAGCATCGCCCGGACGGTTTCCACTCCTTCCTTTATCTTATTTGATGTA
 
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JMFS109H06+           CTTAC---CTCTTGAGTAATGTCTTCTTCCCTAACCCCATCCCACTCTATTACTGGCAAA
JMFS116C02+           CTTACCTTCTCTTGAGTAATGTCTTCTTCCCTAACCCCATCCCACTCTATTACTGGCAAA
JMFS061F09+           CTTACCTTCTCTTGAGTAATGTCTTCTTCCCTAACCCCATCCCACTCTATTACTGGCAAA
                      ____________________________________________________________
consensus             CTTACCTTCTCTTGAGTAATGTCTTCTTCCCTAACCCCATCCCACTCTATTACTGGCAAA
 
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JMFS109H06+           CCATTTTGCAAAACCTCAGTGTACTCTTCTGTACGAGGCTTTGATAAAGCATTGCATTGC
JMFS116C02+           CCATTTTGCAAAACCTCAGTGTACTCTTCTGTACGAGGCTTTGATAAAGCATTGCATTGC
JMFS061F09+           CCATTTTGCAAAACCTCAGTGTACTCTTCTGTACGAGGCTTTGATAAAGCATTGCATTGC
                      ____________________________________________________________
consensus             CCATTTTGCAAAACCTCAGTGTACTCTTCTGTACGAGGCTTTGATAAAGCATTGCATTGC
 
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JMFS109H06+           AGATTCAAGTTAAGCCGATTTTTGCCCAAACACCATATGCCAGCGTTGAAGAAAGACTTT
JMFS116C02+           AGATTCAAGTTAAGCCGATTTTTGCCCAAACACCATATGCCAGCGTTGAAGAAAGACTTT
JMFS061F09+           AGATTCAAGTTAAGCCGATTTTTGCCCAAACACCATATGCCAGCGTTGAAGAAAGACTTT
                      ____________________________________________________________
consensus             AGATTCAAGTTAAGCCGATTTTTGCCCAAACACCATATGCCAGCGTTGAAGAAAGACTTT
 
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JMFS109H06+           AGAGGCGGCGGAGACGGCGGCGGTGGATTAGAAGAGGGGTAATGGCGAGTGGAGGGGGGT
JMFS116C02+           AGAGGCGGCGGAGACGGCGGCGGTGGATTAGAAGAGGGGTAATGGCGAGTGGAGGGGGGT
JMFS061F09+           AGAGGCGGCGGAGACGGCGGCGGTGGATTAGAAGAGGGGTAATGGCGAGTGGAGGGGGGT
                      ____________________________________________________________
consensus             AGAGGCGGCGGAGACGGCGGCGGTGGATTAGAAGAGGGGTAATGGCGAGTGGAGGGGGGT
 
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JMFS109H06+           AGTCTGAGTAAGGAAGCAGTGAGGAAACATTGAGAAGACATGTTTCCTTAGCTTTGTGAA
JMFS116C02+           AGTCTGAGTAAGGAAGCAGTGAGGAAACATTGAGAAGACATGTTTCCTTAGCTTTGTGAA
JMFS061F09+           AGTCTGAGTAAGGAAGCAGTGAGGAAACATTGAGAAGACATGTTTCCTTAGCTTTGTGAA
                      ____________________________________________________________
consensus             AGTCTGAGTAAGGAAGCAGTGAGGAAACATTGAGAAGACATGTTTCCTTAGCTTTGTGAA
 
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JMFS109H06+           AGAAAAGAAGTGCCAATTTTTTTGTTTTGT                              
JMFS116C02+           AGAAAAGAAGTGCCAATTTTTTTGTTTTGTTATGCGATGGAATGATGGAATGAAGGAAGA
JMFS061F09+           AGAAAAGAAGTGCCAATTTTTTTGTTTTGTTATGCGATGGAATGATGGAATGAAGGAAGA
                      ____________________________________________________________
consensus             AGAAAAGAAGTGCCAATTTTTTTGTTTTGTTATGCGATGGAATGATGGAATGAAGGAAGA