Contig 003409:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS074A04+                                                                    GCC
                      ____________________________________________________________
consensus                                                                      GCC
 
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JMFS074A04+           TCAACCTCCCTCGCAATAGCATCCAACTCCTCCAACCAATTTTTCATACTTTTTCCCGCT
                      ____________________________________________________________
consensus             TCAACCTCCCTCGCAATAGCATCCAACTCCTCCAACCAATTTTTCATACTTTTTCCCGCT
 
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JMFS074A04+           AGAGGCATCGATTCCACGTGCTTCCAATCCGGAGCATTATCAGATGGTAACAGAGCAGTT
                      ____________________________________________________________
consensus             AGAGGCATCGATTCCACGTGCTTCCAATCCGGAGCATTATCAGATGGTAACAGAGCAGTT
 
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JMFS074A04+           CTTCTTTCGCTTTGGAGAGAATAAGAATCCTTCTCTCGATTGAAAGCCATAAATGCCTCA
                      ____________________________________________________________
consensus             CTTCTTTCGCTTTGGAGAGAATAAGAATCCTTCTCTCGATTGAAAGCCATAAATGCCTCA
 
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JMFS074A04+           TCTTCAGCACCAACATAAAGCAAAGCCTTTGCTAGCGATATATCTTTGTCCTTCAACTGG
                      ____________________________________________________________
consensus             TCTTCAGCACCAACATAAAGCAAAGCCTTTGCTAGCGATATATCTTTGTCCTTCAACTGG
 
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JMFS074A04+           CAAGATATCTCCTGAGTAAATTTGTCCCTAGCATCTCTTAACAGCTCCTGATAAAACTGG
                      ____________________________________________________________
consensus             CAAGATATCTCCTGAGTAAATTTGTCCCTAGCATCTCTTAACAGCTCCTGATAAAACTGG
 
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JMFS074A04+           GCACTAGATGGATTTTGGGTTTGGGTGAGACCTGATGAAGCAAAAGGCGAAACTCTCAAC
                      ____________________________________________________________
consensus             GCACTAGATGGATTTTGGGTTTGGGTGAGACCTGATGAAGCAAAAGGCGAAACTCTCAAC
 
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JMFS074A04+           CTCGCCTTCTTGGGCGCCTTAGCAGCTCGTTTGTTCAACTTCACATTCTCATTCCCAATC
                      ____________________________________________________________
consensus             CTCGCCTTCTTGGGCGCCTTAGCAGCTCGTTTGTTCAACTTCACATTCTCATTCCCAATC
 
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JMFS074A04+           CAACATCCAACACGACCATCCAAATCATACCTGCTGGAGTTCTCCGGAGAGCCCATCACA
JMFS127E01+                                        CCTGCTGGAGTTCTCCGGAGAGCCCATCACA
JMFS148G02+                                        CCTGCTGGAGTTCTCCGGAGAGCCCATCACA
JMFS058A09+                                      TACCTGCTGGAGTTCTCCGGAGAGCCCATCACA
                      ____________________________________________________________
consensus             CAACATCCAACACGACCATCCAAATCATACCTGCTGGAGTTCTCCGGAGAGCCCATCACA
 
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JMFS074A04+           ATTGGTCGATGAATCAACCCGGGCAATGAAACAGACATCATTCTTGCAAAGAGATGCCTA
JMFS127E01+           ATTGGTCGATGAATCAACCCGGGCAATGAAACAGACATCATTCTTGCAAAGAGATGCCTA
JMFS148G02+           ATTGGTCGATGAATCAACCCGGGCAATGAAACAGACATCATTCTTGCAAAGAGATGCCTA
JMFS058A09+           ATTGGTCGATGAATCAACCCGGGCAATGAAACAGACATCATTCTTGCAAAGAGATGCCTA
                      ____________________________________________________________
consensus             ATTGGTCGATGAATCAACCCGGGCAATGAAACAGACATCATTCTTGCAAAGAGATGCCTA
 
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JMFS074A04+           AAAGTTGCAATC                                                
JMFS127E01+           AAAGTTGCAATCTTTACAGAAAAAAAGGAGAAAAGGGCGATCAAATTAGACTCTCTACTA
JMFS148G02+           AAAGTTGCAATCTTTACAGAAAAAAAGGAGAAAAGGGCGATCAAATTAGACTCTCTACTA
JMFS058A09+           AAAGTTGCAATCTTTACAGAAAAAAAGGAGAAAAGGGCGATCAAATTAGACTCTCTACTA
                      ____________________________________________________________
consensus             AAAGTTGCAATCTTTACAGAAAAAAAGGAGAAAAGGGCGATCAAATTAGACTCTCTACTA
 
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JMFS127E01+           GCAAACAAAAAAGCAGTAGACAACAAAACAAACAGGAGCTCTATAGGGTTAACAACTGGC
JMFS148G02+           GCAAACAAAAAAGCAGTAGACAACAAAACAAACAGGAGCTCTATAGGGTTAACAACTGGC
JMFS058A09+           GCAAACAAAAAAGCAGTAGACAACAAAACAAACAGGAGCTCTATAGGGTTAACAACTGGC
                      ____________________________________________________________
consensus             GCAAACAAAAAAGCAGTAGACAACAAAACAAACAGGAGCTCTATAGGGTTAACAACTGGC
 
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JMFS127E01+           TGTCTTTTCCCTCAAGGTGACGGTGATGAGAATAGAATCAGAACAACGCAGAGGAGTATA
JMFS148G02+           TGTCTTTTCCCTCAAGGTGACGGTGATGAGAATAGAATCAGAACAACGCAGAGGAGTATA
JMFS058A09+           TGTCTTTTCCCTCAAGGTGACGGTGATGAGAATAGAATCAGAACAACGCAGAGGAGTATA
                      ____________________________________________________________
consensus             TGTCTTTTCCCTCAAGGTGACGGTGATGAGAATAGAATCAGAACAACGCAGAGGAGTATA
 
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JMFS127E01+           ATTTGGGACAAAAATCGAAGCCTTACAAGACAAACAAGAAAAAGACAACAAGGCAGCTAG
JMFS148G02+           ATTTGGGACAAAAATCGAAGCCTTACAAGACAAACAAGAAAAAGACAACAAGGCAGCTAG
JMFS058A09+           ATTTGGGACAAAAATCGAAGCCTTACAAGACAAACAAGAAAAAGACAACAAGGCAGCTAG
                      ____________________________________________________________
consensus             ATTTGGGACAAAAATCGAAGCCTTACAAGACAAACAAGAAAAAGACAACAAGGCAGCTAG
 
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JMFS127E01+           TGATGAATTGAAGCAACCACAATCACTAATTCCATTCCTACTATAAGAAATTGAGGAGGA
JMFS148G02+           TGATGAATTGAAGCAACCACAATCACTAATTCGATTCCTACTATAAGAAATTGAGGAGGA
JMFS058A09+           TGATGAATTGAAGCAACCACAATCACTAATTCCATTCCTACTATAAGAAATTGAGGAGGA
                      ____________________________________________________________
consensus             TGATGAATTGAAGCAACCACAATCACTAATTCCATTCCTACTATAAGAAATTGAGGAGGA
 
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JMFS127E01+           AGAAGAAGAAAAAATGTTAAACTGAAAGATGGAACTATTGCCACTACAAGAATTCCCAAG
JMFS148G02+           AGAAGAAGAAAAAATGTTAAACTGAAAGATGGAACTATTGCCACTACAAGAATTCCCAAG
JMFS058A09+           AGAAGAAGAAAAAATGTTAAACTGAAAGATGGAACTATTGCCACTACAAGAATTCCCAAG
                      ____________________________________________________________
consensus             AGAAGAAGAAAAAATGTTAAACTGAAAGATGGAACTATTGCCACTACAAGAATTCCCAAG
 
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JMFS127E01+           ATCCATGGTATTGGACAAACCCAATTGCAGCAGCAGCAGGAGGAGGAAGGAGCAGCAGCT
JMFS148G02+           ATCCATGGTATTGGACAAACCCAATTGCAGCAGCAGCAGGAGGAGGAAGGAGCAGCAGCT
JMFS058A09+           ATCCATGGTATTGGACAAACCCAATTGCAGCAGCAGCAGGAGGAGGAAGGAGCAGCAGCT
                      ____________________________________________________________
consensus             ATCCATGGTATTGGACAAACCCAATTGCAGCAGCAGCAGGAGGAGGAAGGAGCAGCAGCT
 
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JMFS127E01+           TTTTAAACCAAACAGACCCTTCACTCTCTCTCCCTGTAGTTTGTATACATATAAA     
JMFS148G02+           TTTTAAACCAAACAGACCCTTCACTCTCTCTCCCTGTAGTTTGTATACATATAAA     
JMFS058A09+           TTTTAAACCAAACAGACCCTTCACTCTCTCTCCCTGTAGTTTGTATACATATAAATTAAA
                      ____________________________________________________________
consensus             TTTTAAACCAAACAGACCCTTCACTCTCTCTCCCTGTAGTTTGTATACATATAAATTAAA