Contig 003406:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS042F12Sequence641003406 (2)ref|XP_009593140.1|2e-45PREDICTED: K(+) efflux antiporter 2, chloroplastic-like [Nicotiana tomentosifor
JMFS054D11Sequence626003406 (2)ref|XP_009768183.1|4e-74PREDICTED: K(+) efflux antiporter 2, chloroplastic-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS042F12+                                                  CAATTTAGGTAAGTGCTTCCT
                      ____________________________________________________________
consensus                                                    CAATTTAGGTAAGTGCTTCCT
 
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JMFS042F12+           AGCTGACTCCATTACACCATGAAAAACAGAAGCTCGTGTGAATTCATCACCATCTGCAGA
                      ____________________________________________________________
consensus             AGCTGACTCCATTACACCATGAAAAACAGAAGCTCGTGTGAATTCATCACCATCTGCAGA
 
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JMFS042F12+           AGAGGAGAAGAAGGACGCAGAAAAGAAACGGGATGACTTTTTCAATAAAGCTTTTGGAGC
                      ____________________________________________________________
consensus             AGAGGAGAAGAAGGACGCAGAAAAGAAACGGGATGACTTTTTCAATAAAGCTTTTGGAGC
 
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JMFS042F12+           ATTTAATGGTGAGCTATCCCTGGCTAATTCCTTAGGCACTTCCTGTTTTTTACTCTGAAT
                      ____________________________________________________________
consensus             ATTTAATGGTGAGCTATCCCTGGCTAATTCCTTAGGCACTTCCTGTTTTTTACTCTGAAT
 
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JMFS042F12+           GTTAGTTGATTTTTCTGAATCCAGTTCACCATCTTTTGAAGAGTCTGGAATGAAGCTATC
                      ____________________________________________________________
consensus             GTTAGTTGATTTTTCTGAATCCAGTTCACCATCTTTTGAAGAGTCTGGAATGAAGCTATC
 
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JMFS042F12+           ATCTTGGTCACTTGCATCAGATAAGTGAGATTCATCAAATCTATGGCCACCTATATCCAA
                      ____________________________________________________________
consensus             ATCTTGGTCACTTGCATCAGATAAGTGAGATTCATCAAATCTATGGCCACCTATATCCAA
 
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JMFS042F12+           CAGGGTGTCTGCTAAAGGCTCAGCAGTTACCTGGGCATCCTCAACTGATACCTCTCCATG
                      ____________________________________________________________
consensus             CAGGGTGTCTGCTAAAGGCTCAGCAGTTACCTGGGCATCCTCAACTGATACCTCTCCATG
 
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JMFS042F12+           CTTTTCACCATTGGCTGGATTTCTTTGGTTCACCTCACCCTCAAGAACTATCTCATCAGC
                      ____________________________________________________________
consensus             CTTTTCACCATTGGCTGGATTTCTTTGGTTCACCTCACCCTCAAGAACTATCTCATCAGC
 
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JMFS042F12+           CAATGCCTGTCCTCGTGAAAATCCATTTGTAGCCTCTGTGGGATCGATAAATGAAATTGT
                      ____________________________________________________________
consensus             CAATGCCTGTCCTCGTGAAAATCCATTTGTAGCCTCTGTGGGATCGATAAATGAAATTGT
 
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JMFS042F12+           TAGATTCTTCTCAGCTTTCTGTATGGCGATCTCCACATCATTAACATGCTGTGTAGCTTC
JMFS054D11+                        GCTTTCTGTATGGCGATCTCCACATCATTAACATGCTGTGTAGCTTC
                      ____________________________________________________________
consensus             TAGATTCTTCTCAGCTTTCTGTATGGCGATCTCCACATCATTAACATGCTGTGTAGCTTC
 
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JMFS042F12+           GAGTTCAAATGCAACAGCTTGCTCTGCTAATAGCATTATATTTGCCACATCTTCCTCAGC
JMFS054D11+           GAGTTCAAATGCAACAGCTTGCTCTGCTAATAGCATTATATTTGCCACATCTTCCTCAGC
                      ____________________________________________________________
consensus             GAGTTCAAATGCAACAGCTTGCTCTGCTAATAGCATTATATTTGCCACATCTTCCTCAGC
 
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JMFS042F12+           TTTGAGAGCATTCATTTGTG                                        
JMFS054D11+           TTTGAGAGCATTCATTTGTGCTTGCTCTGCAACCTCATTCAACCTGTCAATTTCCTTTTG
                      ____________________________________________________________
consensus             TTTGAGAGCATTCATTTGTGCTTGCTCTGCAACCTCATTCAACCTGTCAATTTCCTTTTG
 
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JMFS054D11+           CAGCTCTTCCTTCCTGTTCTCTAACTGCCTCAGGTCAGCTTCACAATTGGCTAAATGATC
                      ____________________________________________________________
consensus             CAGCTCTTCCTTCCTGTTCTCTAACTGCCTCAGGTCAGCTTCACAATTGGCTAAATGATC
 
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JMFS054D11+           TCGGCATTTTTCCACATCTTCAAGAGCAGCTAAAAGTGTTTCCTCCTCTTTTGATGATGC
                      ____________________________________________________________
consensus             TCGGCATTTTTCCACATCTTCAAGAGCAGCTAAAAGTGTTTCCTCCTCTTTTGATGATGC
 
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JMFS054D11+           TGGCACTTCCTCTTTGCTTTCTCCGGAAGTTTCTAGGGACCCATTCCTTTTTGCAACTTC
                      ____________________________________________________________
consensus             TGGCACTTCCTCTTTGCTTTCTCCGGAAGTTTCTAGGGACCCATTCCTTTTTGCAACTTC
 
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JMFS054D11+           CAATGAATCCATTGCCACCTGGAGCCTTGCCTCAGCCAAAGAAACTGCCATGGTTGCTTT
                      ____________________________________________________________
consensus             CAATGAATCCATTGCCACCTGGAGCCTTGCCTCAGCCAAAGAAACTGCCATGGTTGCTTT
 
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JMFS054D11+           TTGTACGGCTTCTTTAGCCACAGCTTCTTCATTTAGTGTCTCTTGGATACTATTGAGAGC
                      ____________________________________________________________
consensus             TTGTACGGCTTCTTTAGCCACAGCTTCTTCATTTAGTGTCTCTTGGATACTATTGAGAGC
 
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JMFS054D11+           CTTGTTAACATCATTCCAGGCACTTGCTGCTTCATCCTTCAAAGCTATTGCCGCTTCTGA
                      ____________________________________________________________
consensus             CTTGTTAACATCATTCCAGGCACTTGCTGCTTCATCCTTCAAAGCTATTGCCGCTTCTGA
 
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JMFS054D11+           TATCCTCTGAGCTTTCTCCTCAAACTTGGTGCTATTAAGCTGTGCAACCTCCAAGTCTGT
                      ____________________________________________________________
consensus             TATCCTCTGAGCTTTCTCCTCAAACTTGGTGCTATTAAGCTGTGCAACCTCCAAGTCTGT