Contig 003401:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS005D06Sequence584003401 (2)ref|XP_006351668.1|3e-35PREDICTED: U-box domain-containing protein 3-like [Solanum tuberosum]
JMFS045H05Sequence607003401 (2)ref|XP_006351668.1|8e-33PREDICTED: U-box domain-containing protein 3-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFS005D06+                                       TTTCATGCCATAAAAATCCTGTATACGACGCT
JMFS045H05+                                                                CGACGCT
                      ____________________________________________________________
consensus                                         TTTCATGCCATAAAAATCCTGTATACGACGCT
 
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JMFS005D06+           CAGTATCGGATAAACTTAAACTCGACATTGATTGTTCTAGCAATCCACATAGTATGTGAG
JMFS045H05+           CAGTATCGGATAAACTTAAACTCGACATTGATTGTTCTAGCAATCCACATAGTATGTGAG
                      ____________________________________________________________
consensus             CAGTATCGGATAAACTTAAACTCGACATTGATTGTTCTAGCAATCCACATAGTATGTGAG
 
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JMFS005D06+           AAATCTCGAGACCGGAGCTCTGGATTTTCAGCAGCAGTTGCTTACTCTGCAAAGCAGAGA
JMFS045H05+           AAATCTCGAGACCGGAGCTCTGGATTTTCAGCAGCAGTTGCTTACTCTGCAAAGCAGAGA
                      ____________________________________________________________
consensus             AAATCTCGAGACCGGAGCTCTGGATTTTCAGCAGCAGTTGCTTACTCTGCAAAGCAGAGA
 
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JMFS005D06+           GAATCTTGCTCTTCTTTGGAGAATAATTCTCGAGGAACTCCCTGGCTTCATTAATAGCCG
JMFS045H05+           GAATCTTGCTCTTCTTTGGAGAATAATTCTCGAGGAACTCCCTGGCTTCATTAATAGCCG
                      ____________________________________________________________
consensus             GAATCTTGCTCTTCTTTGGAGAATAATTCTCGAGGAACTCCCTGGCTTCATTAATAGCCG
 
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JMFS005D06+           TGTCCATTTCTTCACACTCTCTACAAACAGTTTCATCCGAAGGCACTCTTTTATCAACAA
JMFS045H05+           TGTCCATTTCTTCACACTCTCTACAAACAGTTTCATCCGAAGGCACTCTTTTATCAACAA
                      ____________________________________________________________
consensus             TGTCCATTTCTTCACACTCTCTACAAACAGTTTCATCCGAAGGCACTCTTTTATCAACAA
 
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JMFS005D06+           CATCGTCGAGAGTTGGTTTTAAAAGTTTCAACATACTTGCAGTATCCTCAAAGTCCTTCT
JMFS045H05+           CATCGTCGAGAGTTGGTTTTAAAAGTTTCAACATACTTGCAGTATCCTCAAAGTCCTTCT
                      ____________________________________________________________
consensus             CATCGTCGAGAGTTGGTTTTAAAAGTTTCAACATACTTGCAGTATCCTCAAAGTCCTTCT
 
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JMFS005D06+           GGCCAGGCACAGTCTTAGATATACGACATGTCACGAGATGAATGAATCGAGAAATGCTGT
JMFS045H05+           GGCCAGGCACAGTCTTAGATATACGACATGTCACGAGATGAATGAATCGAGAAANGCTGT
                      ____________________________________________________________
consensus             GGCCAGGCACAGTCTTAGATATACGACATGTCACGAGATGAATGAATCGAGAAATGCTGT
 
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JMFS005D06+           TAATAAGGCATTTTACGGATGTCAAGTCCATTGACCTGGAGCTAAAATGATGAGCCGAAA
JMFS045H05+           TAATAAGGCATTNNACGGATGGCAAGTCCATTGACCTGGAGCTAAAATGATGAGCCGAAA
                      ____________________________________________________________
consensus             TAATAAGGCATTTTACGGATGTCAAGTCCATTGACCTGGAGCTAAAATGATGAGCCGAAA
 
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JMFS005D06+           GAACAAATCTTGAAGAAACGGTGAAGTTTCAGAAAGCAAGAATCTTTAACCCGAAAATTC
JMFS045H05+           GAACAAATCTTGAAGAAACGGTGAAGTTTCAGAAAGCAAGAATCTTTAACCCGAAAATTC
                      ____________________________________________________________
consensus             GAACAAATCTTGAAGAAACGGTGAAGTTTCAGAAAGCAAGAATCTTTAACCCGAAAATTC
 
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JMFS005D06+           ATCGCAACCCATTGAAGAAACCAATGGAATTAATGTGACCCTTTTCTCCAACAATCCTTG
JMFS045H05+           ATCGCAACCCATTGAAGAAACCAATGGAATTAATGTGACCCTTTTCTCCAACAATCCTTG
                      ____________________________________________________________
consensus             ATCGCAACCCATTGAAGAAACCAATGGAATTAATGTGACCCTTTTCTCCAACAATCCTTG
 
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JMFS005D06+           CAAAGGTGCCAG                                                
JMFS045H05+           CAAAGGTGCCAGCCCTCTTGGCAGTGCTTCATTCTAGAGAGATGGAGAGGGAGAGAGAGA
                      ____________________________________________________________
consensus             CAAAGGTGCCAGCCCTCTTGGCAGTGCTTCATTCTAGAGAGATGGAGAGGGAGAGAGAGA