| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS044F04 | Sequence | 642 | 003400 (6) | emb|CBI25910.3| | 2e-95 | unnamed protein product [Vitis vinifera] | |||||
| JMFS045B02 | Sequence | 564 | 003400 (6) | emb|CBI25910.3| | 1e-92 | unnamed protein product [Vitis vinifera] | |||||
| JMSF009E05 | Sequence | 400 | 003762 (4) | emb|CDP09904.1| | 7e-35 | unnamed protein product [Coffea canephora] | 703 | 003400 (6) | ref|XP_003635538.1| | 1e-130 | PREDICTED: elongation factor G-2, chloroplastic-like, partial [Vitis vinifera] |
| JMSF033O08 | Sequence | 625 | 003762 (4) | emb|CDP09904.1| | 6e-72 | unnamed protein product [Coffea canephora] | 712 | 003400 (6) | ref|XP_003635538.1| | 3e-131 | PREDICTED: elongation factor G-2, chloroplastic-like, partial [Vitis vinifera] |
| JMSF041D05 | Sequence | 818 | 003762 (4) | emb|CDP09904.1| | 3e-120 | unnamed protein product [Coffea canephora] | 734 | 003400 (6) | ref|XP_003635538.1| | 1e-144 | PREDICTED: elongation factor G-2, chloroplastic-like, partial [Vitis vinifera] |
| JMSF053M13 | Sequence | 662 | 009367 (5) | ref|XP_011081195.1| | 4e-64 | PREDICTED: uncharacterized protein LOC105164278 isoform X1 [Sesamum indicum] | 697 | 003400 (6) | ref|XP_003635538.1| | 1e-138 | PREDICTED: elongation factor G-2, chloroplastic-like, partial [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMSF053M13+ CCCCACAAGTTAANTATCGTG
____________________________________________________________
consensus CCCCACAAGTTAANTATCGTG
. : . : . : . : . : . :
rJMSF053M13+ AGAAGTATTTCCAAGGTCTCAGAAGTGAGATATATTCACAAGAAGCAGTCGGGTGGGCAA
____________________________________________________________
consensus AGAAGTATTTCCAAGGTCTCAGAAGTGAGATATATTCACAAGAAGCAGTCGGGTGGGCAA
. : . : . : . : . : . :
rJMSF053M13+ GGACAGTTTGCTGATATAACTGTGAGGTTCGAACCCTTGGAAGCTGGTAGTGGATACGAA
rJMSF041D05+ GGACAGTTTGCTGATATCACGGTGAGGTTTGAACCCATGGAAGCCGGTGGTGGATACGAA
rJMSF033O08+ GGACAGTTTGCTGATATCACGGTGANGTTTGAACCCATGGAAGCCGGTGGTGGATACGAA
rJMSF009E05+ GGACAGTTTGCTGATATCACGGTGAGGTTTGAACCCATGGAAGCCGGTGGTGGATACGAA
____________________________________________________________
consensus GGACAGTTTGCTGATATCACGGTGAGGTTTGAACCCATGGAAGCCGGTGGTGGATACGAA
. : . : . : . : . : . :
rJMSF053M13+ TTCACAAGTGAAATCAAGGGAGGTGTAGTGCCAAAAGAATACATCCCGGGTGTGATGAAG
rJMSF041D05+ TTCAAGAGTGAAATCAAGGGAGGCGCGGTGCCAAAGGAATACATCCCGGGTGTGATGAAG
rJMSF033O08+ TTCAAGAGTGAAATCAAGGGAGGCGCGGTGCCAAAGGAATACATCCCGGGTGTGATGAAG
rJMSF009E05+ TTCAAGAGTGAAATCAAGGGAGGCGCGGTGCCAAAGGAATACATCCCGGGTGTGATGAAG
____________________________________________________________
consensus TTCAAGAGTGAAATCAAGGGAGGCGCGGTGCCAAAGGAATACATCCCGGGTGTGATGAAG
. : . : . : . : . : . :
rJMSF053M13+ GGACTAGAAGAATGCATGTGCAATGGAGTGCTAGCAGGCTACCCTGTTGTCGATGTCCGT
rJMSF041D05+ GGGTTGGAAGAATGCATGAGCAACGGAGTGCTAGCGGGCTTTCCTGTTGTCGATGTTCGT
rJMSF033O08+ GGGTTGGAAGAATGCATGAGCAACGGAGTGCTAGCGGGCTTTCCTGTTGTCGATGTTCGT
rJMSF009E05+ GGGTTGGAAGAATGCATGAGCAACGGAGTGCTAGCGGGCTTTCCTGTTGTCGATGTTCGT
JMFS045B02- TGCTAGCGGGCTTTCCTGTTGTCGATGTTCGT
JMFS044F04+ AGCAACGGAGTGCTAGCGGGCTTTCCTGTTGTCGATGTTCGT
____________________________________________________________
consensus GGGTTGGAAGAATGCATGAGCAACGGAGTGCTAGCGGGCTTTCCTGTTGTCGATGTTCGT
. : . : . : . : . : . :
rJMSF053M13+ GCGGTATTAGTTGATGGTTCTTACCATGATGTCGACTCGAGCGTTCTGGCATTCCAGTTG
rJMSF041D05+ GCAGTATTAGTTGATGGTTCCTACCACGACGTTGACTCAAGTGTTCTAGCATTCCAGTTG
rJMSF033O08+ GCAGTATTAGTTGATGGTTCCTACCACGACGTTGACTCAAGTGTTCTAGCATTCCAGTTG
rJMSF009E05+ GCAGTATTAGTTGATGGTTCCTACCACGACGTTGACTCAAGTGTTCTAGCATTCCAGTTG
JMFS045B02- GCAGTATTAGTTGATGGTTCCTACCACGACGTTGACTCAAGTGTTCTAGCATTCCAGTTG
JMFS044F04+ GCAGTATTAGTTGATGGTTCCTACCACGACGTTGACTCAAGTGTTCTAGCATTCCAGTTG
____________________________________________________________
consensus GCAGTATTAGTTGATGGTTCCTACCACGACGTTGACTCAAGTGTTCTAGCATTCCAGTTG
. : . : . : . : . : . :
rJMSF053M13+ GCTGCCAGAGGAGCTTTCAGGGAAGGGATGAGGAAAGCCGGTCCACAATTGCTGGAACCC
rJMSF041D05+ GCTGCAAGAGGAGCTTTTAGGGAAGGCATGAGGAAAGCTGCTCCTCGATTGCTGGAACCC
rJMSF033O08+ GCTGCAAGAGGAGCTTTTAGGGAAGGCATGAGGAAAGCTGCTCCTCGATTGCTGGAACCC
rJMSF009E05+ GCTGCAAGAGGAGCTTTTAGGGAAGGCATGAGGAAAGCTGCTCCTCGATTGCTGGAACCC
JMFS045B02- GCTGCAAGAGGAGCTTTTAGGGAAGGCATGAGGAAAGCTGCTCCTCGATTGCTGGAACCC
JMFS044F04+ GCTGCAAGAGGAGCTTTTAGGGAAGGCATGAGGAAAGCTGCTCCTCGATTGCTGGAACCC
____________________________________________________________
consensus GCTGCAAGAGGAGCTTTTAGGGAAGGCATGAGGAAAGCTGCTCCTCGATTGCTGGAACCC
. : . : . : . : . : . :
rJMSF053M13+ ATTATGAAGGTTGAAGTCGTCACGCCAGAGGAGCATCTCGGAGATNTTATTGGTGACCTC
rJMSF041D05+ GTAATGAAAGTTGAAGTTGTCACACCAGAGGAGCATCTCGGGGATGTTATTGGCGATCTC
rJMSF033O08+ GTAATGAAAGTTGAAGTTGTCACACCAGAGGAGCATCTCGGGGATGTTATTGGCGATCTC
rJMSF009E05+ GTAATGAAAGTTGAAGTTGTCACACCAGAGGAGCATCTCGGGGATGTTATTGGCGATCTC
JMFS045B02- GTAATGAAAGTTGAAGTTGTCACACCAGAGGAGCATCTCGGGGATGTTATTGGCGATCTC
JMFS044F04+ GTAATGAAAGTTGAAGTTGTCACACCAGAGGAGCATCTCGGGGATGTTATTGGCGATCTC
____________________________________________________________
consensus GTAATGAAAGTTGAAGTTGTCACACCAGAGGAGCATCTCGGGGATGTTATTGGCGATCTC
. : . : . : . : . : . :
rJMSF053M13+ AACTCAAGGCGAGGCCAGATCAACAGCTTCGGAGATAAACCCGGTGGTCTCAAGGTAGTC
rJMSF041D05+ AACTCGAGGAGAGGCCAGATCAACAGCTTTGGAGACAAACCCGGTGGTCTCAAGGTTGTT
rJMSF033O08+ AACTCGAGGAGAGGCCAGATCAACAGCTTTGGAGACAAACCCGGTGGTCTCAAGGTTGTT
rJMSF009E05+ AACTCGAGGAGAGGCCAGATCAACAGCTTTGGAGACAAACCCGGTGGTCTCAAGGTTGTT
JMFS045B02- AACTCGAGGAGAGGCCAGATCAACAGCTTTGGAGACAAACCCGGTGGTCTCAAGGTTGTT
JMFS044F04+ AACTCGAGGAGAGGCCAGATCAACAGCTTTGGAGACAAACCCGGTGGTCTCAAGGTTGTT
____________________________________________________________
consensus AACTCGAGGAGAGGCCAGATCAACAGCTTTGGAGACAAACCCGGTGGTCTCAAGGTTGTT
. : . : . : . : . : . :
rJMSF053M13+ GATGCATTGGTGCCACTAGCTGAGATGTTCCAATATGTGAGTAGCTTAAGAGGGATGACA
rJMSF041D05+ GACGCCCTGGTTCCACTAGCAGAAATGTTCCAGTACGTGAGTACTTTGAGAGGGATGACG
rJMSF033O08+ GACGCCCTGGTTCCACTAGCAGAAATGTTCCAGTACGTGAGTACTTTGAGAGGGATGACG
rJMSF009E05+ GACGCCCTGGTTCCACTAGCAGAAATGTTCCAGTACGTGAGTACTTTGAGAGGGATGACG
JMFS045B02- GACGCCCTGGTTCCACTAGCAGAAATGTTCCAGTACGTGAGTACTTTGAGAGGGATGACG
JMFS044F04+ GACGCCCTGGTTCCACTAGCAGAAATGTTCCAGTACGTGAGTACTTTGAGAGGGATGACG
____________________________________________________________
consensus GACGCCCTGGTTCCACTAGCAGAAATGTTCCAGTACGTGAGTACTTTGAGAGGGATGACG
. : . : . : . : . : . :
rJMSF053M13+ AAAGGGCGTGCATCCTACACAATGCAATTAGCCAAATTNGATGTTGTCCCCCAACACATC
rJMSF041D05+ AAAGGTCGGGCATCATACACGATGCAATTGGCGAAATTCGACGTGGTTCCACAACACATC
rJMSF033O08+ AAAGGTCGGGCATCATACACGATGCAATTGGCGAAATTCGACGTGGTTCCACAACACATC
rJMSF009E05+ AAAGGTCGGGCATCATACACGATGCAATTGGCGAAATTCGACGTGGTTCCACAACACATC
JMFS045B02- AAAGGTCGGGCATCATACACGATGCAATTGGCGAAATTCGACGTGGTTCCACAACACATC
JMFS044F04+ AAAGGTCGGGCATCATACACGATGCAATTGGCGAAATTCGACGTGGTTCCACAACACATC
____________________________________________________________
consensus AAAGGTCGGGCATCATACACGATGCAATTGGCGAAATTCGACGTGGTTCCACAACACATC
. : . : . : . : . : . :
rJMSF053M13+ CAGAATAAGCTTGCAACTAAGCAGGAAGCTGTT
rJMSF041D05+ CAGAATCAGCTTGCAACCAAAGAGGAAGCTGTTTCTGCTTGACCTCAATTTTTGAGCACA
rJMSF033O08+ CAGAATCAGCTTGCAACCAAAGAGGAAGCTGTTTCTGCTTGACCTCAATTTTTGAGCACA
rJMSF009E05+ CAGAATCAGCTTGCAACCAAAGAGGAAGCTGTTTCTGCTTGACCTCAATTTTTGAGCACA
JMFS045B02- CAGAATCAGCTTGCAACCAAAGAGGAAGCTGTTTCTGCTTGACCTCAATTTTTGAGCACA
JMFS044F04+ CAGAATCAGCTTGCAACCAAAGAGGAAGCTGTTTCTGCTTGACCTCAATTTTTGAGCACA
____________________________________________________________
consensus CAGAATCAGCTTGCAACCAAAGAGGAAGCTGTTTCTGCTTGACCTCAATTTTTGAGCACA
. : . : . : . : . : . :
rJMSF041D05+ GATATGTTGCTCTGTAATTTTGTGTTTACTCATTGCTTGCATTACACACTTGTGCCAAAA
rJMSF033O08+ GATATGTTGCTCTGTAATTTTGTGTTTACTCATTGCTTGCATTACACACTTGTGCCAAAA
rJMSF009E05+ GATATGTTGCTCTGTAATTTTGTGTTTACTCATTGCTTGCATTACACACTTGTGCCAAAA
JMFS045B02- GATATGTTGCTCTGTAATTTTGTGTTTACTCATTGCTTGCATTACACACTTGTGCCAAAA
JMFS044F04+ GATATGTTGCTCTGTAATTTTGTGTTTACTCATTGCTTGCATTACACACTTGTGCCAAAA
____________________________________________________________
consensus GATATGTTGCTCTGTAATTTTGTGTTTACTCATTGCTTGCATTACACACTTGTGCCAAAA
. : . : . : . : . : . :
rJMSF041D05+ GGCAAATCTTT
rJMSF033O08+ GGCAAATCTTTTTGTACCAAATGTGAAATGCCCCAGGCTCC
rJMSF009E05+ GGCAAATCTTTTTGTACCAAATGTGAAATGCCCCAGGCTCC
JMFS045B02- GGCAAATCTTTTTGTACCAAATGTGAAATGCCCCAGGCTCCTTCCTGTATTC
JMFS044F04+ GGCAAATCTTTTTGTACCAAATGTGAAATGCCCCAGGCTCCTTCCTGTATTCTTACATAC
____________________________________________________________
consensus GGCAAATCTTTTTGTACCAAATGTGAAATGCCCCAGGCTCCTTCCTGTATTCTTACATAC
. : . : . : . : . : . :
JMFS044F04+ TGTGGAATAGAATAGCAATGTTCAACCCCTAAAAAAAAAAAAAAAAAAACTCGAGACTAG
____________________________________________________________
consensus TGTGGAATAGAATAGCAATGTTCAACCCCTAAAAAAAAAAAAAAAAAAACTCGAGACTAG