Contig 003399:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN036O24Sequence633003399 (2)dbj|BAB40334.1|5e-142starch branching enzyme [Ipomoea batatas]
JMFS044E03Sequence627003399 (2)dbj|BAB64912.1|5e-144starch branching enzyme II [Ipomoea batatas]

Alignment

This contig is upended


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JMFN036O24+                  GAAATGAAGACAAACACCAGGTCACCCCTTTCAAAAATGATCATCTTGTCTCC
                      ____________________________________________________________
consensus                    GAAATGAAGACAAACACCAGGTCACCCCTTTCAAAAATGATCATCTTGTCTCC
 
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JMFN036O24+           TTCGTCCTGGCGTGATATGTACTGGTGTTCGGCCGTCATGAAGCCATATTTTTCTTCGAG
                      ____________________________________________________________
consensus             TTCGTCCTGGCGTGATATGTACTGGTGTTCGGCCGTCATGAAGCCATATTTTTCTTCGAG
 
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JMFN036O24+           GTGCTGCATAGCTTGGTCAAATTCTTGCATGCCCTGATATCTTAGATAATTTGCATCACC
                      ____________________________________________________________
consensus             GTGCTGCATAGCTTGGTCAAATTCTTGCATGCCCTGATATCTTAGATAATTTGCATCACC
 
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JMFN036O24+           CAGATCAAATCTACGACGGCATTTATCATAGCTGAAATTGTTTCCAGGGAGAACTGAACC
                      ____________________________________________________________
consensus             CAGATCAAATCTACGACGGCATTTATCATAGCTGAAATTGTTTCCAGGGAGAACTGAACC
 
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JMFN036O24+           ATCAGGAAGGCGTTGTTCACCTCTAGGGAAATCAATCCACTCCGGGTGACCAAATTCGTT
JMFS044E03+                                            AATCCACTCCGGGTGACCAAATTCGTT
                      ____________________________________________________________
consensus             ATCAGGAAGGCGTTGTTCACCTCTAGGGAAATCAATCCACTCCGGGTGACCAAATTCGTT
 
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JMFN036O24+           CCCCATGAAATTTAGATATCCTTCTCCTCCTAATCCCATAGTTACAAGTCTGATCATTTT
JMFS044E03+           CCCCATGAAATTTAGATATCCTTCTCCTCCTAATCCCATAGTTACAAGTCTGATCATTTT
                      ____________________________________________________________
consensus             CCCCATGAAATTTAGATATCCTTCTCCTCCTAATCCCATAGTTACAAGTCTGATCATTTT
 
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JMFN036O24+           ATGCAATGCTATTCCACGGTCTATTACTGGCGTTGATGGTCTATCCAGAGCCATGAAGTC
JMFS044E03+           ATGCAATGCTATTCCACGGTCTATTACTGGCGTTGATGGTCTATCCAGAGCCATGAAGTC
                      ____________________________________________________________
consensus             ATGCAATGCTATTCCACGGTCTATTACTGGCGTTGATGGTCTATCCAGAGCCATGAAGTC
 
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JMFN036O24+           ATACATGTCCTTGTCCATCAACCAGAACGCTATAGTTTTATCACCAACAAGAGCTTGGTC
JMFS044E03+           ATACATGTCCTTGTCCATCAACCAGAACGCTATAGTTTTATCACCAACAAGAGCTTGGTC
                      ____________________________________________________________
consensus             ATACATGTCCTTGTCCATCAACCAGAACGCTATAGTTTTATCACCAACAAGAGCTTGGTC
 
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JMFN036O24+           GTGGCTTTCAGCATAAGCAACACATTTTTCCAGCCATCTTCTGTTAGTAAGAGTGTAAAC
JMFS044E03+           GTGGCTTTCAGCATAAGCAACACATTTTTCCAGCCATCTTCTGTTAGTAAGAGTGTAAAC
                      ____________________________________________________________
consensus             GTGGCTTTCAGCATAAGCAACACATTTTTCCAGCCATCTTCTGTTAGTAAGAGTGTAAAC
 
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JMFN036O24+           AATTTCACCCATTTGCCAATCCTCATCTCTTCTCTTGAGAATCTCAATCCATTTATCGGG
JMFS044E03+           AATTTCACCCATTTGCCAATCCTCATCTCTTCTCTTGAGAATCTCAATCCATTTATCGGG
                      ____________________________________________________________
consensus             AATTTCACCCATTTGCCAATCCTCATCTCTTCTCTTGAGAATCTCAATCCATTTATCGGG
 
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JMFN036O24+           AATTGCCATATGAAGCCGATAGTCAAAACCCACGCCTCCA                    
JMFS044E03+           AATTGCCATATGAAGCCGATAGTCAAAACCCACGCCTCCATCTCTGACGGGAATACAAAA
                      ____________________________________________________________
consensus             AATTGCCATATGAAGCCGATAGTCAAAACCCACGCCTCCATCTCTGACGGGAATACAAAA
 
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JMFS044E03+           TGTTGGCATGCCACTAACATCTTCACCAACGGTTATGGCTTCAGGGAAGAGACCATGAAT
                      ____________________________________________________________
consensus             TGTTGGCATGCCACTAACATCTTCACCAACGGTTATGGCTTCAGGGAAGAGACCATGAAT
 
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JMFS044E03+           GAGATCATTGACGAGCATCAGATACACCACAGCATCAACATCGGTTGCAAACCCAAAATA
                      ____________________________________________________________
consensus             GAGATCATTGACGAGCATCAGATACACCACAGCATCAACATCGGTTGCAAACCCAAAATA
 
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JMFS044E03+           TTCACTGTAGTTTCCAGTGAATCCTACACTCAACCCATGATGAGTATACATCATTGAAGT
                      ____________________________________________________________
consensus             TTCACTGTAGTTTCCAGTGAATCCTACACTCAACCCATGATGAGTATACATCATTGAAGT
 
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JMFS044E03+           TACACCATCAAATCTGAACCCATCAAACTTATACTCATCCAACCACCATCTTGCATTTGA
                      ____________________________________________________________
consensus             TACACCATCAAATCTGAACCCATCAAACTTATACTCATCCAACCACCATCTTGCATTTGA