Contig 003391:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-                                       TATATGCAGTTAGAATAATTAGAAAGAAAGA
                      ____________________________________________________________
consensus                                          TATATGCAGTTAGAATAATTAGAAAGAAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          AAAGAAAATTGTTCCTATTTGATTTCATCAACTATCATATTTCCATTTACAGGTGGGATC
                      ____________________________________________________________
consensus             AAAGAAAATTGTTCCTATTTGATTTCATCAACTATCATATTTCCATTTACAGGTGGGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          AAATGTACCATCTTACAATTGAAGGTGTTGTACTTTCAATGAAATCATGCACTTCTTGAT
                      ____________________________________________________________
consensus             AAATGTACCATCTTACAATTGAAGGTGTTGTACTTTCAATGAAATCATGCACTTCTTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          TCCGATCTCTACTCGATATCTTTTACAGCATCCTTAGCAAGCCGCGTTACATAAGTAGCA
                      ____________________________________________________________
consensus             TCCGATCTCTACTCGATATCTTTTACAGCATCCTTAGCAAGCCGCGTTACATAAGTAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          GCTATGGCCGTAACTAATAGACCTATTCCCAGTGTCACTAGACTGTTCCCTCCAAGACCA
                      ____________________________________________________________
consensus             GCTATGGCCGTAACTAATAGACCTATTCCCAGTGTCACTAGACTGTTCCCTCCAAGACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          ATGCTTGATTCATCTTGAATAATTGCTCGACCAAATGCACCCGCACTCACATAAGCCCAA
                      ____________________________________________________________
consensus             ATGCTTGATTCATCTTGAATAATTGCTCGACCAAATGCACCCGCACTCACATAAGCCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          GTTCCAGGAAGCATACCTAGCCAACTTCCCAAAACATAAGGCACAAACTTGACAGAAGTG
                      ____________________________________________________________
consensus             GTTCCAGGAAGCATACCTAGCCAACTTCCCAAAACATAAGGCACAAACTTGACAGAAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          AGTCCATACAGATAATTTCCAAGAGAAAACGGGAGCAAAGGACTCAAACGGAGAAGGGTC
                      ____________________________________________________________
consensus             AGTCCATACAGATAATTTCCAAGAGAAAACGGGAGCAAAGGACTCAAACGGAGAAGGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          ACAACTTTAAAACCATTTTCTCCAATTGCTTTGTCAATTGCAAGAAATTTCTTGTTCCCT
                      ____________________________________________________________
consensus             ACAACTTTAAAACCATTTTCTCCAATTGCTTTGTCAATTGCAAGAAATTTCTTGTTCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          TCAACCAGTTTTAGAATTCGATCACGAGCAAAATATCTAGCAATGAGAAACGCAACACTT
JMSF033H02+                           TTCGATCACGAGCAAAATATCTAGCAATGAGAAACGCAACACTT
JMSF020G06+                                                      TGAGAAACGCAACACTT
                      ____________________________________________________________
consensus             TCAACCAGTTTTAGAATTCGATCACGAGCAAAATATCTAGCAATGAGAAACGCAACACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          GCAGCCACTGTTCCACTGATAGAGACAATGATGGTTCCAATGACAGAGCCAAACAGAAGA
JMSF033H02+           GCAGCCACTGTTCCANTGATAGAGACAATGATGGTTCCAATGACAGAGCCAAACAGAAGA
JMSF020G06+           GCAGCCACTGTTCCANTGATAGAGACAATGATGGTTCCAATGACGGAGCCAAACAGAAGA
                      ____________________________________________________________
consensus             GCAGCCACTGTTCCACTGATAGAGACAATGATGGTTCCAATGACAGAGCCAAACAGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          CCAGCAGACATGGTCAGCGGAATGGCGGGTATTGCAAGGACCTCTAATCCAGCATAAACT
JMSF033H02+           CCAGCAGACATGGTCAGCGGAATGGCGGGTATTGCAAGGACCTCTAATCCAGCATAAACT
JMSF020G06+           CCAGCAGACATGGTCAGCGGAATGGCGGGTATTGCAAGGACCTCTAATCCAGCATAAACT
JMFS037D12+                                                          TCCAGCATAAACT
                      ____________________________________________________________
consensus             CCAGCAGACATGGTCAGCGGAATGGCGGGTATTGCAAGGACCTCTAATCCAGCATAAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          GCANCAAAAAGTGCATATCCTGCTGGACCATAATCATCAATGATGCTCG-AAACTGTGTC
JMSF033H02+           GCAACAAAAAGTGCATATCCTGCTGGACCATAATCATCAATGATGCTCGAAAACTGTGTC
JMSF020G06+           GCAACAAAAAGTGCATATCCTGCTGGACCATAATCATCAATGATGCTTGAAAACTGTGTC
JMFS037D12+           GCAACAAAAAGTGCATATCCTGCTGGACCATAATCATCAATGATGCTTGAAAACTGTGTC
                      ____________________________________________________________
consensus             GCAACAAAAAGTGCATATCCTGCTGGACCATAATCATCAATGATGCTCGAAAACTGTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H02-          AAGAAAGCATTGATCTGGTC                                        
JMSF033H02+           AAGAAAGCATTGATCTGGTCCTTGTAGAGGTAACCTACAACCCCAAATCCACCAACTGCA
JMSF020G06+           AAGAAAGCATTGATCTGGTCCTTGTAGAGGTAACCTACAACCCCAAATCCACCAACTGCA
JMFS037D12+           AAGAAAGCATTGATCTGGTCCTTGTAGAGGTAACCTACAACCCCAAATCCACCAACTGCA
                      ____________________________________________________________
consensus             AAGAAAGCATTGATCTGGTCCTTGTAGAGGTAACCTACAACCCCAAATCCACCAACTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H02+           CCTACAATCAAAAGACCAGCCAAAAGGGTACCTTTAACCGCAGCATCCCCA-TCCCCTTC
JMSF020G06+           CCTACAATCAAAAGACCAGCCAAAAGGGTACCTTTAACCGCAGCATCCCCATTCCCCTTC
JMFS037D12+           CCTACAATCAAAAGACCAGCCAAAAGGGTACCTTTAACCGCAGCATCCCCA-TCCCCTTC
                      ____________________________________________________________
consensus             CCTACAATCAAAAGACCAGCCAAAAGGGTACCTTTAACCGCAGCATCCCCA-TCCCCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H02+           CCCACCACCACTCTCAGTACTATCATTCTCCTCTTTGGGACCCAAATTCAAGAGCTTACT
JMSF020G06+           CCCACCACCACTCTCAGTACTATCATTCTCCTCTTTGGGACCCAAATTCAAGAGCTTACT
JMFS037D12+           CCCACCACCACTCTCAGTACTATCATTCTCCTCTTTGGGACCCAAATTCAAGAGCTTACT
                      ____________________________________________________________
consensus             CCCACCACCACTCTCAGTACTATCATTCTCCTCTTTGGGACCCAAATTCAAGAGCTTACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H02+           GAAGCTCTGGGGAGCACCAGAGGGAGTCTTGGAAAGGGTCTGCTGTTTCTTGGTTTGTTT
JMSF020G06+           GAAGCTCTGGGGAGCACCAGAGGGAGTCTTGGAAAGGGTCTGCTGTTTCTTGGTTTGTTT
JMFS037D12+           GAAGCTCTGGGGAGCACCAGAGGGAGTCTTGGAAAGGGTCTGCTGTTTCTTGGTTTGTTT
                      ____________________________________________________________
consensus             GAAGCTCTGGGGAGCACCAGAGGGAGTCTTGGAAAGGGTCTGCTGTTTCTTGGTTTGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H02+           GAGGGAAGAGCGTGGCTTCAAGAAGTGGAACCTCTTGGGTCTGAAGCTATATAGAAACGA
JMSF020G06+           GAGGGAAGAGCGTGGCTTCAAGAAGTGGAACCTCTTGGGTCTGAAGCTATATAGAAACGA
JMFS037D12+           GAGGGAAGAGCGTGGCTTCAAGAAGTGGAACCTCTTGGGTCTGAAGCTATATAGAAACGA
                      ____________________________________________________________
consensus             GAGGGAAGAGCGTGGCTTCAAGAAGTGGAACCTCTTGGGTCTGAAGCTATATAGAAACGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H02+           AGAGCAAGAAGGGGAAGAAGACGAGGAAAGGGCAAAGCATAGTGATAATGGTCGGGTCGA
JMSF020G06+           AGAGCAAGAAGGGGAAGAAGACGAGGAAAGGGCAAAGCATAGTGATAATGGTCGGGTCGA
JMFS037D12+           AGAGCAAGAAGGGGAAGAAGACGAGGAAAGGGCAAAGCATAGTGATAATGGTCGGGTCGA
                      ____________________________________________________________
consensus             AGAGCAAGAAGGGGAAGAAGACGAGGAAAGGGCAAAGCATAGTGATAATGGTCGGGTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H02+           GGAAACGGTGGGCATTTCAAGTGGTCGAAGAGGACAAAGAAAGCTTCTTTTTCCTCTGCT
JMSF020G06+           GGAAACGGTGGGCATTTCAAGTGGTCGAAGAGGACAAAGAAAGCTTCTTTTTCCTCTGCT
JMFS037D12+           GGAAACGGTGGGCATTTCAAGTGGTCGAAGAGGACAAAGAAAGCTTCTTTTTCCTCTGCT
                      ____________________________________________________________
consensus             GGAAACGGTGGGCATTTCAAGTGGTCGAAGAGGACAAAGAAAGCTTCTTTTTCCTCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H02+           TTTCTAGTTGTGTTTTTGAGCTCATTCAAGAACGTTTTAG                    
JMSF020G06+           TTTCTAGTTGTGTTTTTGAGCTCATTCAAGAACGTTTTAGGAATTAGGAGAGGGCAGATG
JMFS037D12+           TTTCTAGTTGTGTTTTTGAGCTCATTCAAGAACGTTTTAGGAATTAGGAGAGGGCAGATG
                      ____________________________________________________________
consensus             TTTCTAGTTGTGTTTTTGAGCTCATTCAAGAACGTTTTAGGAATTAGGAGAGGGCAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF020G06+           CCAGGAAAAATTTCGAAC                                          
JMFS037D12+           CCAGGAAAAATTTCGAACAAACAGAATATACTCCCATTCTTCTAGCTATCGCTGTTTGAA
                      ____________________________________________________________
consensus             CCAGGAAAAATTTCGAACAAACAGAATATACTCCCATTCTTCTAGCTATCGCTGTTTGAA