Contig 003390:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS036F12Sequence578003390 (5)ref|XP_009804619.1|70.9PREDICTED: probable transcription factor PosF21 [Nicotiana sylvestris] ref|XP_00
JMSF006M13Sequence372003390 (5)263001279 (4)ref|XP_006387190.1|6e-10hypothetical protein POPTR_1576s00200g, partial [Populus trichocarpa] gb|ERP4610
JMSF016O03Sequence430003390 (5)ref|XP_009627336.1|49.3PREDICTED: probable transcription factor PosF21 [Nicotiana tomentosiformis] ref|753008490 (3)ref|XP_011088545.1|157PREDICTED: uncharacterized protein LOC105169746 [Sesamum indicum] ref|XP_0110885
JMSF029M19Sequence658003390 (5)ref|XP_009627336.1|137PREDICTED: probable transcription factor PosF21 [Nicotiana tomentosiformis] ref|696008490 (3)ref|XP_011088545.1|143PREDICTED: uncharacterized protein LOC105169746 [Sesamum indicum] ref|XP_0110885
JMSF046G11Sequence789003390 (5)ref|XP_009804619.1|123PREDICTED: probable transcription factor PosF21 [Nicotiana sylvestris] ref|XP_00829008490 (3)ref|XP_011088545.1|223PREDICTED: uncharacterized protein LOC105169746 [Sesamum indicum] ref|XP_0110885

Alignment

This contig is upended


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JMSF046G11+                      GGGCGGCAATAAAGAATGTGAATTGCCATCCCGTTCCCCCATTGAAGCA
                      ____________________________________________________________
consensus                        GGGCGGCAATAAAGAATGTGAATTGCCATCCCGTTCCCCCATTGAAGCA
 
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JMSF046G11+           TCAGTAGACATGTGGTCAGTAAGGGATGTCAAAGGGGATTCCCGATATGGCGAGGGGCTT
                      ____________________________________________________________
consensus             TCAGTAGACATGTGGTCAGTAAGGGATGTCAAAGGGGATTCCCGATATGGCGAGGGGCTT
 
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JMSF029M19+                        AATCCAGAGAGAAAAATGAAGGCTGTGATAGAGATCGCGAGTGAGAA
JMSF046G11+           AACGGTGGCAAGGAATCAAGAGAGAAAAATGAAGGCTGTGATAGAGATCGCGAGTGAGAA
                      ____________________________________________________________
consensus             AACGGTGGCAAGGAATCCAGAGAGAAAAATGAAGGCTGTGATAGAGATCGCGAGTGAGAA
 
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JMSF029M19+           GGCCCTGGGCNTGAAGCACTAAAATTCTGGACACCCATCTGCTGATTCACCTGCCTGGAC
JMSF046G11+           GGCCCTGGGCTTGAAGCACTAAAATTCTGGACACCCATCTGCTGATTCACCTGCCTGGAC
                      ____________________________________________________________
consensus             GGCCCTGGGCTTGAAGCACTAAAATTCTGGACACCCATCTGCTGATTCACCTGCCTGGAC
 
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JMSF029M19+           ACCGGGATCTGCGAATAAGGCGAAATGGGAGGCATTTGCGGATGAGAAGGCGGGATGCCG
JMSF046G11+           ACCGGGATCTGCGAATAAGGCGAAATGGGAGGCATTTGCGGATGAGAAGGCGGGATGCCG
                      ____________________________________________________________
consensus             ACCGGGATCTGCGAATAAGGCGAAATGGGAGGCATTTGCGGATGAGAAGGCGGGATGCCG
 
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JMSF029M19+           GCCCTTTTGCTTGTGTTTTCAGAGCTAAAATTTGGGGAGAACTGTCGCATTTGACTCTGA
JMSF046G11+           GCCCTTTTGCTTGTGTTTTCAGAGCTAAAATTTGGAGAGAACTGTCGCATTTGACTCTGA
JMFS036F12+                                 AGCTAAAATTTGGAGAGAACTGTCGCATTTGACTCTGA
                      ____________________________________________________________
consensus             GCCCTTTTGCTTGTGTTTTCAGAGCTAAAATTTGGAGAGAACTGTCGCATTTGACTCTGA
 
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JMSF029M19+           AATTGCGAAGTATTCAGCTGGGGTATGTCAAGTTGGTTCATTGAACCAGGTTGTTGTTGT
JMSF046G11+           AATTGCGAAGTATTCAGCTGGGGTATGTCAAGTTGGTTCATTGAACCAGGTTGTTGTTGT
JMSF016O03+           AATTGCGAAGTATTCAGCTGGGGTATGTCAAGTTGGTTCATTGAACCAGGTTGTTGTTGT
JMFS036F12+           AATTGCGAAGTATTCAGCTGGGGTATGTCAAGTTGGTTCATTGAACCAGGTTGTTGTTGT
                      ____________________________________________________________
consensus             AATTGCGAAGTATTCAGCTGGGGTATGTCAAGTTGGTTCATTGAACCAGGTTGTTGTTGT
 
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JMSF029M19+           TGTTTAGGAAGGACTGGAGATGATGATTTCCCAAAAGATGATTGAAGTCTCTGGATCATA
JMSF046G11+           TGTTTAGGAAGGACTGGAGATGATGATTTCCCAAAAGATGATTGAAGTCTCTGGATCATA
JMSF016O03+           TGTTTAGGAAGGACTGGAGATGATGATTTCCCAAAAGATGATTGAAGTCTCTGGATCATA
JMSF006M13+                   AAGGACTGGAGATGATGATTTCCCAAAAGATGATTGAAGTCTCTGGATCATA
JMFS036F12+           TGTTTAGGAAGGACTGGAGATGATGATTTCCCAAAAGATGATTGAAGTCTCTGGATCATA
                      ____________________________________________________________
consensus             TGTTTAGGAAGGACTGGAGATGATGATTTCCCAAAAGATGATTGAAGTCTCTGGATCATA
 
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JMSF029M19+           TCAGTATTAACTTCCTCACCATTACCACCCATTTTCACTCCAAAATTCCAACTGCAACAC
JMSF046G11+           TCAGTATTAACTTCCTCACCATTACCACCCATTTTCACTCCAAAATTCCAACTGCAACAC
JMSF016O03+           TCAGTATTAACTTCCTCACCATTACCACCCATTTTCACTCCAAAATTCCAACTGCAACAC
JMSF006M13+           TCAGTATTAACTTCCTCACCATTACCACCCATTTTCACTCCAAAATTCCAACTGCAACAC
JMFS036F12+           TCAGTATTAACTTCCTCACCATTACCACCCATTTTCACTCCAAAATTCCAACTGCAACAC
                      ____________________________________________________________
consensus             TCAGTATTAACTTCCTCACCATTACCACCCATTTTCACTCCAAAATTCCAACTGCAACAC
 
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JMSF029M19+           TTAAATAGATATCAATACCACTAACACTCAACCAGTGATCTCAAAGATGACTACAACCTA
JMSF046G11+           TTAAATAGATATCAATACCACTAACACTCAACCAGTGATCTCAAAGATGACTACAACCTA
JMSF016O03+           TTAAATAGATATCAATACCACTAACACTCAACCAGTGATCTCAAAGATGACTACAACCTA
JMSF006M13+           TTAAATAGATATCAATACCACTAACACTCAACCAGTGATCTCAAAGATGACTACAACCTA
JMFS036F12+           TTAAATAGATATCAATACCACTAACACTCAACCAGTGATCTCAAAGATGACTACAACCTA
                      ____________________________________________________________
consensus             TTAAATAGATATCAATACCACTAACACTCAACCAGTGATCTCAAAGATGACTACAACCTA
 
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JMSF029M19+           AGTTTTCATTTCAGTAAACCCTGAGAGTGAATCGGACACTTTCAGGAGGGAGAGCGGCGC
JMSF046G11+           AGTTTTCATTTCAGTAAACCCTGAGAGTGAATCGGACACTTTCAGGAGGGAGAGCGGCGC
JMSF016O03+           AGTTTTCATTTCAGTAAACCCTGAGAGTGAATCGGACACTTTCAGGAGGGAGAGCGGCGC
JMSF006M13+           AGTTTTCATTTCAGTAAACCCTGAGAGTGAATCGGACACTTTCAGGAGGGAGAGCGGCGC
JMFS036F12+           AGTTTTCATTTCAGTAAACCCTGAGAGTGAATCGGACACTTTCAGGAGGGAGAGCGGCGC
                      ____________________________________________________________
consensus             AGTTTTCATTTCAGTAAACCCTGAGAGTGAATCGGACACTTTCAGGAGGGAGAGCGGCGC
 
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JMSF029M19+           ACGTTAGCGAGAGTTTATCCGCCACATTTTAGGGTAGAAGGAGGAGTGGGGACGGAGACA
JMSF046G11+           ACGTTAGCGAGAGTTTATCCGCCACATTTTAGGGTAGAAGGAGGAGTGGGGACGGAGACA
JMSF016O03+           ACGTTAGCGAGAGTTTATCCGCCACATTTTAGGGTAGAAGGAGGAGTGGGGACGGAGACA
JMSF006M13+           ACGTTAGCGAGAGTTTATCCGCCACATTTTAGGGTAGAAGGAGGAGTGGGGACGGAGACA
JMFS036F12+           ACGTTAGCGAGAGTTTATCCGCCACATTTTAGGGTAGAAGGAGGAGTGGGGACGGAGACA
                      ____________________________________________________________
consensus             ACGTTAGCGAGAGTTTATCCGCCACATTTTAGGGTAGAAGGAGGAGTGGGGACGGAGACA
 
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JMSF029M19+           CCGAAGCCTCAGGCCAGGCCAAGGAAGGTCTACCTCTCTCTCTTTCTCTCTCTTCTGCGT
JMSF046G11+           CCGAAGCCTCAGGCCAGGCCAAGGAAGGTCTACCTCTCTCTCTTTCTCTCTCTTCTGCGT
JMSF016O03+           CCGAAGCCTCAGGCCAGGCCAAGGAAGGTCTACCTCTCTCTCTTTCTCTCTCTTCTGCGT
JMSF006M13+           CCGAAGCCTCAGGCCAGGCCAAGGAAGGTCTACCTCTCTCTCTTTCTCTCTCTTCTGCGT
JMFS036F12+           CCGAAGCCTCAGGCCAGGCCAAGGAAGGTCTACCTCTCTCTCTTTCTCTCTCTTCTGCGT
                      ____________________________________________________________
consensus             CCGAAGCCTCAGGCCAGGCCAAGGAAGGTCTACCTCTCTCTCTTTCTCTCTCTTCTGCGT
 
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JMSF029M19+           GTGTTCCTC                                                   
JMSF046G11+           GTGTTCCTCGCTTTCTC                                           
JMSF016O03+           GTGTTCCTC                                                   
JMSF006M13+           GTGTTCCTCGCTTTCTC                                           
JMFS036F12+           GTGTTCCTCGCTTTCTCTCACTAAAAGTATATGTGTATGTATATATCTCTTTCTCTCTCT
                      ____________________________________________________________
consensus             GTGTTCCTCGCTTTCTCTCACTAAAAGTATATGTGTATGTATATATCTCTTTCTCTCTCT
 
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JMFS036F12+           CTCCCTCTATATCGACGATGAGTAAACTACAACAACTCGTATATTACACGGATTTCCCTC
                      ____________________________________________________________
consensus             CTCCCTCTATATCGACGATGAGTAAACTACAACAACTCGTATATTACACGGATTTCCCTC