| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS023G09 | Sequence | 517 | 003389 (7) | ref|XP_009616001.1| | 2e-32 | PREDICTED: centromere-associated protein E isoform X2 [Nicotiana tomentosiformi | |||||
| JMFS028D11 | Sequence | 671 | 003389 (7) | ref|XP_009616001.1| | 3e-58 | PREDICTED: centromere-associated protein E isoform X2 [Nicotiana tomentosiformi | |||||
| JMFS035G06 | Sequence | 428 | 003389 (7) | ||||||||
| JMFS051H03 | Sequence | 604 | 003389 (7) | ref|XP_004244607.1| | 2e-27 | PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 [Solanum lycopersicum] | |||||
| JMFS084D08 | Sequence | 589 | 003389 (7) | ref|XP_004244607.1| | 1e-27 | PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 [Solanum lycopersicum] | |||||
| JMFS125C12 | Sequence | 555 | 003389 (7) | ref|XP_004244607.1| | 1e-17 | PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 [Solanum lycopersicum] | |||||
| JMFS150D02 | Sequence | 569 | 003389 (7) | ref|XP_009616001.1| | 5e-49 | PREDICTED: centromere-associated protein E isoform X2 [Nicotiana tomentosiformi | |||||
This contig is upended
. : . : . : . : . : . :
JMFS028D11+ GGTCGAA
____________________________________________________________
consensus GGTCGAA
. : . : . : . : . : . :
JMFS150D02+ TTTCGAGTTCTTGAG
JMFS028D11+ AGAATCATGAATTCGTTGTATCGATACATGCAATACAGCNCCGGATTTCGAGTTCTTGAG
____________________________________________________________
consensus AGAATCATGAATTCGTTGTATCGATACATGCAATACAGCNCCGGATTTCGAGTTCTTGAG
. : . : . : . : . : . :
JMFS150D02+ TGGAAGAGATACCGAGAAAACCTTAGTCGCCTCAGCATAGCTCGAGAAATCAATGNAAGC
JMFS028D11+ TGGAAGAGATACCGAGGAAACCTTAGTCGCCTCAGCATAGCTCGAGAAATCAATGGAAGC
____________________________________________________________
consensus TGGAAGAGATACCGAGGAAACCTTAGTCGCCTCAGCATAGCTCGAGAAATCAATGGAAGC
. : . : . : . : . : . :
JMFS150D02+ TTCTCCAACAACCCCCGATTTCGAAGAACCAGTTCCAACAACAAAGTTATAGATTCTCTC
JMFS028D11+ TTCTCCAACAACCCCCGATTTCGAAGAACCAGTTCCAACAACAAAGTTATAGATTCTCTC
____________________________________________________________
consensus TTCTCCAACAACCCCCGATTTCGAAGAACCAGTTCCAACAACAAAGTTATAGATTCTCTC
. : . : . : . : . : . :
JMFS150D02+ ATGAATCTTCCCCGATTTCGGTTCTCTATACAGCTTCACAGTCTCATAAACCGCATTCTC
JMFS028D11+ ATGAATCTTCCCCGATTTCGGTTCTCTATACAGCTTCACAGTCTCATAAACCGCATTCTC
JMFS023G09+ TCCCCGATTTCGGTTCTCTATACAGCTTCACAGTCTCATAAACCGCATTCTC
JMFS084D08+ CAGTCTCATAAACCGCATTCTC
JMFS051H03+ AGTCTCATAAACGGCATTCTC
____________________________________________________________
consensus ATGAATCTTCCCCGATTTCGGTTCTCTATACAGCTTCACAGTCTCATAAACCGCATTCTC
. : . : . : . : . : . :
JMFS150D02+ CCAGCAACAGCTCCCATCACGAATCGTCGCTTTCTCTGATTTCACTGTTGGCTTCCCAAC
JMFS028D11+ CCAGCAACAGCTCCCATCACGAATCGTCGCTTTCTCTGATTTCACTGTTGGCTTCCCAAC
JMFS023G09+ CCAGCAACAGCTCCCATCACGAATCGTCGCTTTCTCTGATTTCACTGTTGGCTTCCCAAC
JMFS084D08+ CCAGCAACAGCTCCCATCACGAATCGTCGCTTTCTCTGATTTCACTGTTGGCTTCCCAAC
JMFS051H03+ CCAGCAACAGCTCCCATCACGAATCGTCGCTTTCTCTGATTTCACTGTTGGCTTCCCAAC
JMFS125C12+ GATTTCACTGTTGGCTTCCCAAC
____________________________________________________________
consensus CCAGCAACAGCTCCCATCACGAATCGTCGCTTTCTCTGATTTCACTGTTGGCTTCCCAAC
. : . : . : . : . : . :
JMFS150D02+ ATCACCAGGAACCACAGAGATCATCAATGAATCCCCTGCTACCTGAGTTGCACGGAAGTG
JMFS028D11+ ATCACCAGGAACCACAGAGATCATCAATGCATCCCCTGCTACCTGAGTTGCACGGAAGTG
JMFS023G09+ ATCACCAGGAACCACAGAGATCATCAATGCATCCCCTGCTACCTGAGTTGCACGGAAGTG
JMFS084D08+ ATCACCAGGAACCACAGAGATCATCAATGCATCCCCTGCTACCTGAGTTGCACGGAAGTG
JMFS051H03+ ATCACCAGGAACCACAGAGATCATCAATGCATCCCCTGCTACCTGAGTTGCACGGAAGTG
JMFS125C12+ ATCACCAGGAACCACAGAGATCATCAATGCATCCCCTGCTACCTGAGTTGCACGGAAGTG
____________________________________________________________
consensus ATCACCAGGAACCACAGAGATCATCAATGCATCCCCTGCTACCTGAGTTGCACGGAAGTG
. : . : . : . : . : . :
JMFS150D02+ CAGCTTGAAAACACCTTTGATCTTCCCCTTTTCGCTCCGCCATCGCGCCGACTTGAACAT
JMFS028D11+ CAGCTTGAAAACACCTTTGATCTTCCCCTTTTCGCTCCGCCATCGCGCCGACTTGAACAT
JMFS023G09+ CAGCTTGAAAACACCTTTGATCTTCCCCTTTTCGCTCCGCCATCGCGCCGACTTGAACAT
JMFS084D08+ CAGCTTGAAAACACCTTTGATCTTCCCCTTTTCGCTCCGCCATCGCGCCGACTTGAACAT
JMFS051H03+ CAGCTTGAAAACACCTTTGATCTTCCCCTTTTCGCTCCGCCATCGCGCCGACTTGAACAT
JMFS125C12+ CAGCTTGAAAACACCTTTGATCTTCCCCTTTTCGCTCCGCCATCGCGCCGACTTGAACAT
JMFS035G06+ TTGAACAT
____________________________________________________________
consensus CAGCTTGAAAACACCTTTGATCTTCCCCTTTTCGCTCCGCCATCGCGCCGACTTGAACAT
. : . : . : . : . : . :
JMFS150D02+ TTTTCAACTACCAAACACACATTTCCCTCAACCAATTCCCCAACACTCGCCGGAGCTTAC
JMFS028D11+ TTTTCAACTACCAAACACACATTTCCCTCAACCAATTCCCCAACACTCGCCGGAGCTTAC
JMFS023G09+ TTTTCAACTACCAAACACACATTTCCCTCAACCAATTCCCCAACACTCGCCGGAGCTTAC
JMFS084D08+ TTTTCAACTACCAAACACACATTTCCCTCAACCAATTCCCCAACACTCGCCGGAGCTTAC
JMFS051H03+ TTTTCAACTACCAAACACACATTTCCCTCAACCAATTCCCCAACACTCGCCGGAGCTTAC
JMFS125C12+ TTTTCAACTACCAAACACACATTTCCCTCAACCAATTCCCCAACACTCGCCGGAGCTTAC
JMFS035G06+ TTTTCAACTACCAAACACACATTTCCCTCAACCAATTCCCCAACACTCGCCGGAGCTTAC
____________________________________________________________
consensus TTTTCAACTACCAAACACACATTTCCCTCAACCAATTCCCCAACACTCGCCGGAGCTTAC
. : . : . : . : . : . :
JMFS150D02+ CAGAGCTCCGGCGAAACCAGCCGGGAATCAA
JMFS028D11+ CAGAGCTCCGGCGAAACCAGCCGGGAATCAACCATTAACCCCAAAGATCACCACTTTTTC
JMFS023G09+ CAGAGCTCCGGCGAAACCAGCCGGGAATCAACCATTAACCCCAAAGATCACCACTTTTTC
JMFS084D08+ CAGAGCTCCGGCGAAACCAGCCGGGAATCAACCATTAACCCCAAAGATCACCACTTTTTC
JMFS051H03+ CAGAGCTCCGGCGAAACCAGCCGGGAATCAACCATTAACCCCAAAGATCACCACTTTTTC
JMFS125C12+ CAGAGCTCCGGCGAAACCAGCCGGGAATCAACCATTAACCCCAAAGATCACCACTTTTTC
JMFS035G06+ CAGAGCTCCGGCGAAACCAGCCGGGAATCAACCATTAACCCCAAAGATCACCACTTTTTC
____________________________________________________________
consensus CAGAGCTCCGGCGAAACCAGCCGGGAATCAACCATTAACCCCAAAGATCACCACTTTTTC
. : . : . : . : . : . :
JMFS028D11+ AGAAACCAAAACCACCCACTTCGACTCCTACACTGTAGCAGAGACAGAGAGAGAGAGAAG
JMFS023G09+ CGAAACCAAAACCACCCACTTCGACTCCTACACTGTAGCAGAGACAGAGAGAGAGAGAAG
JMFS084D08+ CGAAACCAAAACCACCCACTTCGACTCCTACACTGTAGCAGAGACAGAGAGAGAGAGAAG
JMFS051H03+ CGAAACCAAAACCACCCACTTCGACTCCTACACTGTAGCAGAGACAGAGAGAGAGAGAAG
JMFS125C12+ CGAAACCAAAACCACCCACTTCGACTCCTACACTGTAGCAGAGACAGAGAGAGAGAGAAG
JMFS035G06+ CGAAACCAAAACCACCCACTTCGACTCTTACACTGTAGCAGAGACAGAGAGAGAGAGAAG
____________________________________________________________
consensus CGAAACCAAAACCACCCACTTCGACTCCTACACTGTAGCAGAGACAGAGAGAGAGAGAAG
. : . : . : . : . : . :
JMFS028D11+ GGGAGAGAGAAAGAAGTGTATCACCGAGTTGACTCGGTT
JMFS023G09+ GGGAGAGAGAAAGAAGTGTATCACCGAGTTGACTCGGTTGATAAAATTAAATGCCAATTG
JMFS084D08+ GGGAGAGAGAAAGAAGTGTATCACCGAGTTGACTCGGTTGATAAAATTAAATGCCAATTG
JMFS051H03+ GGGAGAGAGAAAGAAGTGTATCACCGAGTTGACTCGGTTGATAAAATTAAATGCCAATTG
JMFS125C12+ GGGAGAGAGAAAGAAGTGTATCACCGAGTTGACTCGGTTGATAAAATTAAATGCCAATTG
JMFS035G06+ GGGAGAGAGAAAGAAGTGTATCACCGAGTTGACTCGGTTGATACCCCTCAATGCCAATTG
____________________________________________________________
consensus GGGAGAGAGAAAGAAGTGTATCACCGAGTTGACTCGGTTGATAAAATTAAATGCCAATTG
. : . : . : . : . : . :
JMFS023G09+ AGCTCAGAAAGGAATCAAAGCTCTCCTTCGTTTCAGAAGAAGCTC
JMFS084D08+ AGCTCAGAAAGGAATCAAAGCTCTCCTTCGTTTCAGAAGAAGCTCCGCATTGAACATTCG
JMFS051H03+ AGCTCAGAAAGGAATCAAAGCTCTCCTTCGTTTCAGAAGAAGCTCCGCATTGAACATTCG
JMFS125C12+ AGCTCAGAAAGGAATCAAAGCTCTCCTTCGTTTCAGAAGAAGCTCCGCATTGAACATTCG
JMFS035G06+ AGCTCAGAAAGGAATCAAAGCTCTCCTTCGTTTCAGAAGAAGCTCCGCATTGAACATTCG
____________________________________________________________
consensus AGCTCAGAAAGGAATCAAAGCTCTCCTTCGTTTCAGAAGAAGCTCCGCATTGAACATTCG
. : . : . : . : . : . :
JMFS084D08+ TTAATGGAAATCAAGAATGAGTATGGAGAACACAATAGAACAGATCCGTGGCGGTGCATC
JMFS051H03+ TTAATGGAAATCAAGAATGAGTATGGAGAACACAATAGAACAGATCCGTGGCGGTGCATC
JMFS125C12+ TTAATGGAAATCAAGAATGAGTATGGAGAACACAATAGAACAGATCCGTGGCGGTGCATC
JMFS035G06+ TTAATGGAAATCAAGAATGAGTATGGAGAACACAATAGAACAGATCCGTGGCGGTGCATC
____________________________________________________________
consensus TTAATGGAAATCAAGAATGAGTATGGAGAACACAATAGAACAGATCCGTGGCGGTGCATC
. : . : . : . : . : . :
JMFS084D08+ TCTGCTGTTTTACCACTCTTCTCTCTC
JMFS051H03+ TCTGCTGTTTTACCACTCTTCTCTCTCTCTCTCTCTCTAAAGC
JMFS125C12+ TCTGCTGTTTTACCACTCTTCTCTCTCTCTCTCTCTCTAAAGCTCAT
JMFS035G06+ TGTGCTGTTTTACCACTCTTCTCTCTCTCTCTCTCTGTAAAGCTCATCCTCGTCCGAATT
____________________________________________________________
consensus TCTGCTGTTTTACCACTCTTCTCTCTCTCTCTCTCTCTAAAGCTCATCCTCGTCCGAATT