Contig 003388:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF045G20+                                                       TCATCTTCATGTAAAT
                      ____________________________________________________________
consensus                                                         TCATCTTCATGTAAAT
 
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JMSF045G20+           ATTCATCCGTCTTCCCTTTTGAGGTCTCCTTTCTCTTAATATCGATCTTTACATTTGACT
                      ____________________________________________________________
consensus             ATTCATCCGTCTTCCCTTTTGAGGTCTCCTTTCTCTTAATATCGATCTTTACATTTGACT
 
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JMSF045G20+           CCAAAGAAATGCTCCTATTCTTGGCCAAGCTTACTTGCCCAACAAATCTCCAAGAAGCTG
JMFS035E04+                                         TTACTTGCCCAACAAATCTCCAAGAAGCTG
                      ____________________________________________________________
consensus             CCAAAGAAATGCTCCTATTCTTGGCCAAGCTTACTTGCCCAACAAATCTCCAAGAAGCTG
 
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JMSF045G20+           ATAAATTGCTCTTTCTGAAAGAATCAAGACTTAGTGGCCCTAAATCATCTGTACTGGCCT
JMFS035E04+           ATAAATTGCTCTTTCTGAAAGAATCAAGACTTAGTGGCCCTAAATCATCTGTACTGGCCT
                      ____________________________________________________________
consensus             ATAAATTGCTCTTTCTGAAAGAATCAAGACTTAGTGGCCCTAAATCATCTGTACTGGCCT
 
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JMSF045G20+           TGATTATAGCAAACACCTCTCTTGTTAATATTGGTTTAATATGTTGCAACGCAAGCCTCT
JMFS035E04+           TGATTATAGCAAACACCTCTCTTGTTAATATTGGTTTAATATGTTGCAACGCAAGCCTCT
                      ____________________________________________________________
consensus             TGATTATAGCAAACACCTCTCTTGTTAATATTGGTTTAATATGTTGCAACGCAAGCCTCT
 
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JMSF045G20+           CTCTCCAATCAAGATCCATTTGACGAGAAGTAGTTGAAACATGATTTATATCAATTGAAC
JMFS035E04+           CTCTCCAATCAAGATCCATTTGACGAGAAGTAGTTGAAACATGATTTATATCAATTGAAC
                      ____________________________________________________________
consensus             CTCTCCAATCAAGATCCATTTGACGAGAAGTAGTTGAAACATGATTTATATCAATTGAAC
 
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JMSF045G20+           TAGAAATATAGAGGCCGCGGCCGATAAAGAAAATCAACGGAGCAATGCAGGAACAGAAGA
JMFS035E04+           TAGAAATATAGAGGCCGCGGCCGATAAAGAAAATCAACGGAGCAATGCAGGAACAGAAGA
                      ____________________________________________________________
consensus             TAGAAATATAGAGGCCGCGGCCGATAAAGAAAATCAACGGAGCAATGCAGGAACAGAAGA
 
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JMSF045G20+           TGAGAACCACAACGGGGAATCGAGATCCACCGCCCCTGTTCCTATGGGTGCCGCTCACAC
JMFS035E04+           TGAGAACCACAACGGGGAATCGAGATCCACCGCCCCTGTTCCTATGGGTGCCGCTCACAC
                      ____________________________________________________________
consensus             TGAGAACCACAACGGGGAATCGAGATCCACCGCCCCTGTTCCTATGGGTGCCGCTCACAC
 
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JMSF045G20+           CTGATAATCCCTTCTTCGACGCCATTACCTATCCAGCAACCACAGAAAATTTTAACAAGT
JMFS035E04+           CTGATAATCCCTTCTTCGACGCCATTACCTATCCAGCAACCACAGAAAATTTTAACAAGT
                      ____________________________________________________________
consensus             CTGATAATCCCTTCTTCGACGCCATTACCTATCCAGCAACCACAGAAAATTTTAACAAGT
 
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JMSF045G20+           AGAAAAAGTGTCAACAACTTCAGTGGACGATTTGACCAAGTAGCTCGAGTAGAAGATAAA
JMFS035E04+           AGAAAAAGTGTCAACAACTTCAGTGGACGATTTGACCAAGTAGCTCGAGTAGAAGATAAA
                      ____________________________________________________________
consensus             AGAAAAAGTGTCAACAACTTCAGTGGACGATTTGACCAAGTAGCTCGAGTAGAAGATAAA
 
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JMSF045G20+           ATCTTCCAGAAACAGAAAGAGAACGAAGGGGCGAGTACATCGGGAAATTGAGAGAATATC
JMFS035E04+           ATCTTCCAGAAACAGAAAGAGAACGAAGGGGCGAGTACATCGGGAAATTGAGAGAATATC
                      ____________________________________________________________
consensus             ATCTTCCAGAAACAGAAAGAGAACGAAGGGGCGAGTACATCGGGAAATTGAGAGAATATC
 
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JMSF045G20+           AAGAAACTAGAATATATAGATACAATTATATCTGTATATATGTGTTTTCCAGTTAATTTT
JMFS035E04+           AAGAAA--AGAATATATAGATACAATTATATCTGTATATATGTGTTTTCCAGTTAATTTT
                      ____________________________________________________________
consensus             AAGAAACTAGAATATATAGATACAATTATATCTGTATATATGTGTTTTCCAGTTAATTTT
 
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JMSF045G20+           GCCCTAAATCCGAGTAAGAGAGAAAGTATGAAAGAAGCGATCC                 
JMFS035E04+           GCCCTAAATCCGAGTAAGAGAGAAAGTATGAAAGAAGCGATCCGATGAGGGGATAATTGG
                      ____________________________________________________________
consensus             GCCCTAAATCCGAGTAAGAGAGAAAGTATGAAAGAAGCGATCCGATGAGGGGATAATTGG