| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005E20 | Sequence | 504 | 003384 (10) | ref|XP_009760497.1| | 3e-69 | PREDICTED: membrane steroid-binding protein 2-like [Nicotiana sylvestris] | 733 | 003384 (10) | ref|XP_009760497.1| | 3e-70 | PREDICTED: membrane steroid-binding protein 2-like [Nicotiana sylvestris] |
| JMFS031A04 | Sequence | 332 | 003384 (10) | emb|CDP05219.1| | 4e-21 | unnamed protein product [Coffea canephora] | |||||
| JMSF002K08 | Sequence | 303 | 003384 (10) | emb|CDP05219.1| | 4e-22 | unnamed protein product [Coffea canephora] | 732 | 003384 (10) | ref|XP_009760497.1| | 1e-71 | PREDICTED: membrane steroid-binding protein 2-like [Nicotiana sylvestris] |
| JMSF015I02 | Sequence | 468 | 003384 (10) | emb|CDP05219.1| | 2e-61 | unnamed protein product [Coffea canephora] | 743 | 003384 (10) | ref|XP_009760497.1| | 5e-72 | PREDICTED: membrane steroid-binding protein 2-like [Nicotiana sylvestris] |
| JMSF037B23 | Sequence | 660 | 003384 (10) | ref|XP_009760497.1| | 8e-91 | PREDICTED: membrane steroid-binding protein 2-like [Nicotiana sylvestris] | 670 | 003384 (10) | ref|XP_009760497.1| | 7e-69 | PREDICTED: membrane steroid-binding protein 2-like [Nicotiana sylvestris] |
| JMSF051P19 | Sequence | 685 | 014789 | emb|CDP05219.1| | 1e-41 | unnamed protein product [Coffea canephora] | 738 | 003384 (10) | ref|XP_009760497.1| | 8e-47 | PREDICTED: membrane steroid-binding protein 2-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF051P19- GCAAGATAGCATGGTATGAAATATATG
rJMSF037B23- GTATGAAATATATG
rJMSF002K08- GTATGAAATATATG
rJMSF015I02- GTATGAAATATATG
____________________________________________________________
consensus GCAAGATAGCATGGTATGAAATATATG
. : . : . : . : . : . :
rJMSF051P19- CTTCTTTATTTCAATACTTAGATATTCAGACAAGTTGGCTACCTAAGATGTATTCTATAC
rJMSF037B23- CTTCTTTATTTCAATACTTAGATATTCAGACAAGTTGGCTACCTAAGATGTATTCTATAC
rJMSF002K08- CTTCTTTATTTCAATACTTAGATATTCAGACAAGTTGGCTACCTAAGATGTATTCTATAC
rJMSF015I02- CTTCTTTATTTCAATACTTAGATATTCAGACAAGTTGGCTACCTAAGATGTATTCTATAC
rJMFF005E20- ATACTTAGATATTCAGACAAGTTGGCTACCTAAGATGTATTCTATAC
____________________________________________________________
consensus CTTCTTTATTTCAATACTTAGATATTCAGACAAGTTGGCTACCTAAGATGTATTCTATAC
. : . : . : . : . : . :
rJMSF051P19- TGGAATTAAAATTTCAGCAAGACAATA-AACAGACAACAAAGCTGCTCTTCCCCATCCCT
rJMSF037B23- TGGAATTAAAATTTCAGCAAGACAATA-AACAGACAACAAAGCTGCTCTTCCCCATCCCT
rJMSF002K08- TGGAATTAAAATTTCAGCAAGACAATA-AACAGACAACAAAGCTGCTCTTCCCCATCCCT
rJMSF015I02- TGGAATTAAAATTTCAGCAAGACAATA-AACAGACAACAAAGCTGCTCTTCCCCATCCCT
rJMFF005E20- TGGAATTANAATTTCAGCAAGACAATAGAACAGACAACAAAGCTGCTCTTCCCCATCCCT
____________________________________________________________
consensus TGGAATTAAAATTTCAGCAAGACAATA-AACAGACAACAAAGCTGCTCTTCCCCATCCCT
. : . : . : . : . : . :
rJMSF051P19- CCTTCAACAATCAACTGTTTTCCTCAGTGGCCACATCTACTCCTTTTTCTCAGCATCGAC
rJMSF037B23- CCTTCAACAATCAACTGTTTTCCTCAGTGGCCACATCTACTCCTTTTTCTCAGCATCGAC
rJMSF002K08- CCTTCAACAATCAACTGTTTTCCTCAGTGGCCACATCTACTCCTTTTTCTCAGCATCGAC
rJMSF015I02- CCTTCAACAATCAACTGTTTTCCTCAGTGGCCACATCTACTCCTTTTTCTCAGCATCGAC
rJMFF005E20- CCTTCAACAATCAACTGTTTTCCTCAGTGGCCACATCTACTCCTTTTTCTCAGCATCGAC
____________________________________________________________
consensus CCTTCAACAATCAACTGTTTTCCTCAGTGGCCACATCTACTCCTTTTTCTCAGCATCGAC
. : . : . : . : . : . :
rJMSF051P19- GACACCAGATGCATCCCCGTTTTCAGCTGGAACGCTTTCTGATTGAGCGTGTTCGGTGGG
rJMSF037B23- GACACCAGATGCATCCCCGTTTTCAGCTGGAACGCTTTCTGATTGAGCGTGTTCGGTGGG
rJMSF002K08- GACACCAGATGCATCCCCGTTTTCAGCTGGAACGCTTTCTGATTGAGCGTGTTCGGTGGG
rJMSF015I02- GACACCAGATGCATCCCCGTTTTCAGCTGGAACGCTTTCTGATTGAGCGTGTTCGGTGGG
rJMFF005E20- GACACCANATGCATCCCCGTTTTCAGCTGGAACGCTTTCTGATTGAGCGTGTTCGGTGGG
____________________________________________________________
consensus GACACCAGATGCATCCCCGTTTTCAGCTGGAACGCTTTCTGATTGAGCGTGTTCGGTGGG
. : . : . : . : . : . :
rJMSF051P19- CTTAGCGCTCTCTGGTGGGCCATCCTCGGCTGGGTTAACACTGCGGTCAGTTGTTGTCTC
rJMSF037B23- CTTAGCGCTCTCTGGTGGGCCATCCTCGGCTGGGTTAACACTGCGGTCAGTTGTTGTCTC
rJMSF002K08- CTTAGCGCTCTCTGGTGGGCCATCCTCGGCTGGGTTAACACTGCGGTCAGTTGTTGTCTC
rJMSF015I02- CTTAGCGCTCTCTGGTGGGCCATCCTCGGCTGGGTTAACACTGCGGTCAGTTGTTGTCTC
rJMFF005E20- CTTANCGCTCTCTGGTGGGCCATCCTCGGCTGGGTTAACACTGCGGTCAGTTGTTGTCTC
JMSF037B23+ TAACACTGCGGTCAGTTGTTGTCTC
____________________________________________________________
consensus CTTAGCGCTCTCTGGTGGGCCATCCTCGGCTGGGTTAACACTGCGGTCAGTTGTTGTCTC
. : . : . : . : . : . :
rJMSF051P19- TGAAGGTCCATCTTCGTTAGACGACGTCTCCTGCCCACCTTCTGCCACTGAACTCTTGAC
rJMSF037B23- TGAAGGTCCATCTTCGTTAGACGACGTCTCCTGCCCACCTTCTGCCACTGAACTCTTGAC
rJMSF002K08- TGAAGGTCCATCTTCGTTAGACGACGTCTCCTGCCCACCTTCTGCCACTGAACTCTTGAC
rJMSF015I02- TGAAGGTCCATCTTCGTTAGACGACGTCTCCTGCCCACCTTCTGCCACTGAACTCTTGAC
rJMFF005E20- TGAAGGTCCATCTTCGTTAGACGACGTCTCCTGCCCACCTTCTGCCACTGAACTCTTGAC
JMSF037B23+ TGAAGGTCCATCTTCGTTAGACGACGTCTCCTGCCCACCTTCTGCCACTGAACTCTTGAC
____________________________________________________________
consensus TGAAGGTCCATCTTCGTTAGACGACGTCTCCTGCCCACCTTCTGCCACTGAACTCTTGAC
. : . : . : . : . : . :
rJMSF051P19- AGTCCCAACCTTTACATATTTGCTCATGAATTTGTATTCCCAGTCACGTAGTGCATCGAG
rJMSF037B23- AGTCCCAACCTTTACATATTTGCTCATGAATTTGTATTCCCAGTCACGTAGTGCATCGAG
rJMSF002K08- AGTCCCAACCTTTACATATTTGCTCATGAATTTGTATTCCCAGTCACGTAGTGCATCGAG
rJMSF015I02- AGTCCCAACCTTTACATATTTGCTCATGAATTTGTATTCCCAGTCACGTAGTGCATCGAG
rJMFF005E20- AGTCCCAACCTTTACATATTTGCTCATGAATTTGTATTCCCAGTCACGNAGTGCATCGAG
JMSF037B23+ AGTCCCAACCTTTACATATTTGCTCATGAATTTGTATTCCCAGTCACGTAGTGCATCGAG
____________________________________________________________
consensus AGTCCCAACCTTTACATATTTGCTCATGAATTTGTATTCCCAGTCACGTAGTGCATCGAG
. : . : . : . : . : . :
rJMSF051P19- CTCGAAAGGACCAAGGCCCGATATGTCACCGGTAAGGTCTTTTTCCTCAAAGGACATCTT
rJMSF037B23- CTCGAAAGGACCAAGGCCCGATATGTCACCGGTAAGGTCTTTTTCCTCAAAGGACATCTT
rJMSF002K08- CTCGAAAGGACCAAGGCCCGATATGTCACCGGTAAGGTCTTTTTCCTCAAAGGACATCTT
rJMSF015I02- CTCGAAAGGACCAAGGCCCGATATGTCACCGGTAAGGTCTTTTTCCTCAAAGGACATCTT
rJMFF005E20- CTCGAAAGGACCAAGGCCCGATATGTCACCGGTAAGGTCTTTTTCCTCAAAGGACATCTT
JMSF037B23+ CTCGAAAGGACCAAGGCCCGATATGTCACCGGTAAGGTCTTTTTCCTCAAAGGACATCTT
JMSF015I02+ CAAAGGACATCTT
JMFF005E20+ AGGCCCGATATGTCACCGGTAAGGTCTTTTTCCTCAAAGGACATCTT
____________________________________________________________
consensus CTCGAAAGGACCAAGGCCCGATATGTCACCGGTAAGGTCTTTTTCCTCAAAGGACATCTT
. : . : . : . : . : . :
rJMSF051P19- AGCGAGTGCTCTACTAGCATCCTTTCCGGCAAACAATGCATAAGGTCCCCCGGGTCCATA
rJMSF037B23- AGCGAGTGCTCTACTAGCATCCTTTCCGGCAAACAATGCATAAGGTCCCCCGGGTCCATA
rJMSF002K08- AGCGAGTGCTCTACTAGCATCCTTTCCGGCAAACAATGCATAAGGTCCCCCGGGTCCATA
rJMSF015I02- AGCGAGTGCTCTACTAGCATCCTTTCCGGCAAACAATGCATAAGGTCCCCCGGGTCCATA
rJMFF005E20- AGCGAGTGCTCTACTANCATCCTTTCCGGCAAACAATGCATAAGGTCCCCCGGGTCCATA
JMSF037B23+ AGCGAGTGCTCTACTAGCATCCTTTCCGGCAAACAATGCATAAGGTCCCCCGGGTCCATA
JMSF015I02+ AGCGAGTGCTCTACTAGCATCCTTTCCGGCAAACAATGCATAAGGTCCCCCGGGTCCATA
JMFF005E20+ AGCGAGTGCTCTACTAGCATCCTTTCCGGCAAACAATGCATAAGGTCCCCCGGGTCCATA
____________________________________________________________
consensus AGCGAGTGCTCTACTAGCATCCTTTCCGGCAAACAATGCATAAGGTCCCCCGGGTCCATA
. : . : . : . : . : . :
rJMSF051P19- AAACATTCTGC
rJMSF037B23- AAACATTCTGCTTTGTGAAACATCATAGATCTGACTCTTGATAGCCATGAGCAGAGGCTT
rJMSF002K08- AAACATTCTGCTTTGTGAAACATCATAGATCTGACTCTTGATAGCCATGAGCAGAGGCTT
rJMSF015I02- AAACATTCTGCTTTGTGAAACATCATAGATCTGACTCTTGATAGCCATGAGCAGAGGCTT
rJMFF005E20- AAACATTCTGCTTTGTGAAACATCATAGATCTGACTCTTGATANCCATGANCAGAGGCTT
JMSF037B23+ AAACATTCTGCTTTGTGAAACATCATAGATCTGACTCTTGATAGCCATGAGCAGAGGCTT
JMSF015I02+ AAACATTCTGCTTTGTGAAACATCATAGATCTGACTCTTGATAGCCATGAGCAGAGGCTT
JMFF005E20+ AAACATTCTGCTTTGTGAAACATCATAGATCTGACTCTTGATAGCCATGAGCAGAGGCTT
____________________________________________________________
consensus AAACATTCTGCTTTGTGAAACATCATAGATCTGACTCTTGATAGCCATGAGCAGAGGCTT
. : . : . : . : . : . :
rJMSF037B23- CTTGGGATCAGAGCCATCGTACTGTTTCAGCTCCTCCTCGGAGATC
rJMSF002K08- CTTGGGATCAGAGCCATCGTACTGTTTCAGCTCCTCCTCGGAGATCTCGCCGAGCTGAAC
rJMSF015I02- CTTGGGATCAGAGCCATCGTACTGTTTCAGCTCCTCCTCGGAGATCTCGCCGAGCTGAAC
rJMFF005E20- CTTGGGATCAGAGCCATCGTACTGTTTCAGCTCCTCCTCGGAGATCTCGCCGAGCTGAAC
JMSF037B23+ CTTGGGATCAGAGCCATCGTACTGTTTCAGCTCCTCCTCGGAGATCTCGCCGAGCTGAAC
JMSF015I02+ CTTGGGATCAGAGCCATCGTACTGTTTCAGCTCCTCCTCGGAGATCTCGCCGAGCTGAAC
JMFF005E20+ CTTGGGATCAGAGCCATCGTACTGTTTCAGCTCCTCCTCGGAGATCTCGCCGAGCTGAAC
JMSF002K08+ CCTCGGAGATCTCGCCGAGCTGAAC
JMFS031A04+ AGCTCCTCCTCGGAGATCTCGCCGAGTTGAAC
____________________________________________________________
consensus CTTGGGATCAGAGCCATCGTACTGTTTCAGCTCCTCCTCGGAGATCTCGCCGAGCTGAAC
. : . : . : . : . : . :
rJMSF002K08- CGGCGGCGGCAGGGGCTCCACGTGCTCCTCCACCTCCNTGGGCCTTCCA
rJMSF015I02- CGGCGGCGGCAGGGGCTCCACGTGCTCCTCCACCTCCCTGGGCCTTCCATAGTTGCCTTG
rJMFF005E20- CGGCGGCGGCAGGGGCTCCACGTGCTCCTCCACCTCCCTGGGCCTTCCATAGTTGCCTTG
JMSF037B23+ CGGCGGCGGCAGGGGCTCCACGTGCTCCTCCACCTCCCTGGGCCTTCCATAGTTGCCTTG
JMSF015I02+ CGGCGGCGGCAGGGGCTCCACGTGCTCCTCCACCTCCCTGGGCCTTCCATAGTTGCCTTG
JMFF005E20+ CGGCGGCGGCAGGGGCTCCACGTGCTCCTCCACCTCCCTGGGCCTTCCATAGTTGCCTTG
JMSF002K08+ CGGCGGCGGCAGGGGCTCCACGTGCTCCTCCACCTCCCTGGGCCTTCCATAGTTGCCTTG
JMFS031A04+ CGGCGGCGGCAGGGGCTCCACGTGCTCCTCCACCTCCCTGGGCCTTCCATAGTTGCCTTG
____________________________________________________________
consensus CGGCGGCGGCAGGGGCTCCACGTGCTCCTCCACCTCCCTGGGCCTTCCATAGTTGCCTTG
. : . : . : . : . : . :
rJMFF005E20- GTCCGATGATC
JMSF037B23+ GTCCGATGATCCAAACAACCCAGAAGCCACATAGTAGATTGCAAGAATCAGAGCAGAAAC
JMSF015I02+ GTCCGATGATCCAAACAACCCAGAAGCCACATAGTAGATTGCAAGAATCAGAGCAGAAAC
JMFF005E20+ GTCCGATGATCCAAACAACCCAGAAGCCACATAGTAGATTGCAAGAATCAGAGCAGAAAC
JMSF002K08+ GTCCGATGATCCAAACAACCCAGAAGCCACATAGTAGATTGCAAGAATCAGAGCAGAAAC
JMFS031A04+ GTCCGATGATCCAAACAACCCAGAAGCCACATAGTAGATTGCAAGAATCAGAGCAGAACC
____________________________________________________________
consensus GTCCGATGATCCAAACAACCCAGAAGCCACATAGTAGATTGCAAGAATCAGAGCAGAAAC
. : . : . : . : . : . :
JMSF037B23+ CGTGAAGAAAGTTGCCGGAGATAGACCCGTGTACGTTGTGATTGCGGCTTTCAGTGTCTC
JMSF015I02+ CGTGAAGAAAGTTGCCGGAGATAGACCCGTGTACGTTGTGATTGCGGCTTTCAGTGTCTC
JMFF005E20+ CGTGAAGAAAGTTGCCGGAGATAGACCCGTGTACGTTGTGATTGCGGCTTTCAGTGTCTC
JMSF002K08+ CGTGAAGAAAGTTGCCGGAGATAGACCCGTGTACGTTGTGATTGCGGCTTTCAGTGTCTC
JMFS031A04+ CGTGAAGAAAGTTGCCGGAGATAGACCCGTGTACGTTGTGATTGCGAGTTTCAGTGTCTC
____________________________________________________________
consensus CGTGAAGAAAGTTGCCGGAGATAGACCCGTGTACGTTGTGATTGCGGCTTTCAGTGTCTC
. : . : . : . : . : . :
JMSF037B23+ CCAGAGTTCTATCGCCATGGTGAGAAGAGAGATTGAAAGAGGGGAAGAAAAATCTTCGGA
JMSF015I02+ CCAGAGTTCTATCGCCATGGTGAGAAGAGAGATTGAAAGAGGGGAAGAAAAATCTTCGGA
JMFF005E20+ CCAGAGTTCTATCGCCATGGTGAGAAGAGAGATTGAAAGAGGGGAAGAAAAATCTTCGGA
JMSF002K08+ CCAGAGTTCTATCGCCATGGTGAGAAGAGAGATTGAAAGAGGGGAAGAAAAATCTTCGGA
JMFS031A04+ CCAGAGTTCTATCGCCATGGTGAGAAGAGAGATTGAAAGAGGGGAAGAAAAATCTTCGGA
____________________________________________________________
consensus CCAGAGTTCTATCGCCATGGTGAGAAGAGAGATTGAAAGAGGGGAAGAAAAATCTTCGGA
. : . : . : . : . : . :
JMSF037B23+ TAGTCGATAGTATCAAAGAAGACAAAGGGTCAAT
JMSF015I02+ TAGTCGATAGTATCAAAGAAGACAAAGGGTCAAT
JMFF005E20+ TAGTCGATAGTATCAAAGAAGACAAAGGGTCAAT
JMSF002K08+ TAGTCGATAGTATCAAAGAAGACAAAGGGTCAAT
JMFS031A04+ TAGTCGATAGTATCAAAGAAGCCAAAGGGTCAATGCCACGGAAAAGGCAAGATTGGGCCT
____________________________________________________________
consensus TAGTCGATAGTATCAAAGAAGACAAAGGGTCAATGCCACGGAAAAGGCAAGATTGGGCCT