Contig 003375:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS054F09+                                                                   CAGA
                      ____________________________________________________________
consensus                                                                     CAGA
 
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JMFS054F09+           TCCAAAACTTCAAGCTTCTCCATACCCCAAACACCCACAGGTATTTCACCACTCAATTCA
                      ____________________________________________________________
consensus             TCCAAAACTTCAAGCTTCTCCATACCCCAAACACCCACAGGTATTTCACCACTCAATTCA
 
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JMFS054F09+           TTGAAAGGCAGTGATAAAATTCGAAGTTCAGTGAGTTTCGCTATAGCTGAAGATAGTTTA
                      ____________________________________________________________
consensus             TTGAAAGGCAGTGATAAAATTCGAAGTTCAGTGAGTTTCGCTATAGCTGAAGATAGTTTA
 
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JMFS054F09+           CCAACAAGTTTCACACTACTATTCGAGCAACCCCTCCTAATCCCAAACCCATACAGCGGG
JMFS023A03+                                                TAATCCCAAACCCATACAGCGGG
                      ____________________________________________________________
consensus             CCAACAAGTTTCACACTACTATTCGAGCAACCCCTCCTAATCCCAAACCCATACAGCGGG
 
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JMFS054F09+           AATTTAGCAATATTATCACAATAAAAAGAACCCGAATTACCTCCACCGCTGATATTCAAA
JMFS023A03+           AATTTAGCAATATTATCACAATAAAAAGAACCCGAATTACCTCCACCGCTGATATTCAAA
                      ____________________________________________________________
consensus             AATTTAGCAATATTATCACAATAAAAAGAACCCGAATTACCTCCACCGCTGATATTCAAA
 
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JMFS054F09+           GCCACGACCCGGGAATTCGAATCGCAGGAAACTCCCACCCACGAACAATGATGAGAATTG
JMFS023A03+           GCCACGACCCGGGAATTCGAATCGCAGGAAACTCCCACCCACGAACAATGATGAGAATTG
                      ____________________________________________________________
consensus             GCCACGACCCGGGAATTCGAATCGCAGGAAACTCCCACCCACGAACAATGATGAGAATTG
 
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JMFS054F09+           CTTGAGCTCCAGCTCGACAAAGCTCCAGAAGCGTCCGAAACTGAGCTCTTGAACTCCAGG
JMFS023A03+           CTTGAGCTCCAGCTCGACAAAGCTCCAGAAGCGTCCGAAACTGAGCTCTTGAACTCCAGG
                      ____________________________________________________________
consensus             CTTGAGCTCCAGCTCGACAAAGCTCCAGAAGCGTCCGAAACTGAGCTCTTGAACTCCAGG
 
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JMFS054F09+           AGAGCCGACTGGTCCGAACCCAACCCCAAGGCGGCATAGGAGAAGATCAAAATGAGCGTT
JMFS023A03+           AGAGCCGACTGGTCCGAACCCAACCCCAAGGCGGCATAGGAGAAGATCAAAATGAGCGTT
                      ____________________________________________________________
consensus             AGAGCCGACTGGTCCGAACCCAACCCCAAGGCGGCATAGGAGAAGATCAAAATGAGCGTT
 
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JMFS054F09+           AGAAGCTTGTGAAGTTGGAACCATTTGATCACAAAAGAACAATGACCCATTTCCAAACCC
JMFS023A03+           AGAAGATTGTGAAGTTGGAACCATTTGATCACAAAAGAACAATGACCCATTTCCAAACCC
                      ____________________________________________________________
consensus             AGAAGCTTGTGAAGTTGGAACCATTTGATCACAAAAGAACAATGACCCATTTCCAAACCC
 
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JMFS054F09+           CAAAAAGGGTCCTCGAAAAAAAGCCGAACGCCCGTGCTCTCCCAACTTTGATTTGGATAT
JMFS023A03+           CAAAAAGGGTCCTCGAAAAAAAGCCGAACGCCCGTGCTCTCCCAACTTTGATTTGGATAT
                      ____________________________________________________________
consensus             CAAAAAGGGTCCTCGAAAAAAAGCCGAACGCCCGTGCTCTCCCAACTTTGATTTGGATAT
 
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JMFS054F09+           AGAAGTACAGAACTTGAGGTTTTGCTGGGAAAAAAACAACAACAAACCCCAACCCTAATT
JMFS023A03+           AGAAGTACAGAACTTGAGGTTTTGCTGGGAAAAAAACAACAACAAACCCCAACCCTAATT
                      ____________________________________________________________
consensus             AGAAGTACAGAACTTGAGGTTTTGCTGGGAAAAAAACAACAACAAACCCCAACCCTAATT
 
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JMFS054F09+           TTCGTTTGCTTCTTTTGATCAGAGTGGGAGGACAGAGG                      
JMFS023A03+           TTCGTTTGCTTCTTTTGATCAGAGTGGGAGGACAGAGGAGACAGACAGACAGACAGAACA
                      ____________________________________________________________
consensus             TTCGTTTGCTTCTTTTGATCAGAGTGGGAGGACAGAGGAGACAGACAGACAGACAGAACA