Contig 003364:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF037K06-                                                       CCGACAACACAATTA
                      ____________________________________________________________
consensus                                                          CCGACAACACAATTA
 
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JMFF037K06+                                                                      A
rJMFF037K06-          CACAAACTGATAAGCTAAGGCAAAATAGTGCTTTGCCTACTTAAAAGAACCTCCTAATAA
                      ____________________________________________________________
consensus             CACAAACTGATAAGCTAAGGCAAAATAGTGCTTTGCCTACTTAAAAGAACCTCCTAATAA
 
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JMFF037K06+           CGTTAAGAAACAAACAATAACAATTGTACAACACAGAAGCAGACACCAATAACAACAAAA
rJMFF037K06-          CGTTAAGAAACAAACAATAACAATTGTACAACACAGAAGCAGACACCAATAACAACAAAA
                      ____________________________________________________________
consensus             CGTTAAGAAACAAACAATAACAATTGTACAACACAGAAGCAGACACCAATAACAACAAAA
 
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JMFF037K06+           TCATGAAAATGAGCCACGGCTAGGTGTGGGGAGAAATAATATAATGTTGGCTTAATTATT
rJMFF037K06-          TCATGAAAATGAGCCACGGCTAGGTGTGGGGAGAAATAATATAATGTTGGCTTAATTATT
                      ____________________________________________________________
consensus             TCATGAAAATGAGCCACGGCTAGGTGTGGGGAGAAATAATATAATGTTGGCTTAATTATT
 
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JMFF037K06+           GGCACTTGAAGCCAGTAGGGACAGTCTTTTGGCAGGCACTAACAAGAGCACTGAGAGCCA
rJMFF037K06-          GGCACTTGAAGCCAGTAGGGACAGTCTTTTGGCAGGCACTAACAAGAGCACTGAGAGCCA
                      ____________________________________________________________
consensus             GGCACTTGAAGCCAGTAGGGACAGTCTTTTGGCAGGCACTAACAAGAGCACTGAGAGCCA
 
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JMFF037K06+           CCGGCACTTCCAGGTTGATCATATATCCCAGTGCAAACAGGAGTCTTACTAGCACCCAAA
rJMFF037K06-          CCGGCACTTCCAGGTTGATCATATATCCCAGTGCAAACAGGAGTCTTACTAGCACCCAAA
JMFS084F10+                          TGATCATATATCCCAGTGCAAACAGGAGTCTTACTAGCACCCAAA
JMFS066D02+                          TGATCATATATCCCAGTGCAAACAGGAGTCTTACTAGCACCCAAA
                      ____________________________________________________________
consensus             CCGGCACTTCCAGGTTGATCATATATCCCAGTGCAAACAGGAGTCTTACTAGCACCCAAA
 
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JMFF037K06+           CTATCCCCACTTTTCTCATCACTGAAAAGATCAGAACTTGATGAATTATCAAGATTCTCC
rJMFF037K06-          CTATCCCCACTTTTCTCATCACTGAAAAGATCAGAACTTGATGAATTATCAAGATTCTCC
JMFS084F10+           CTATCCCCACTTTTCTCATCACTGAAAAGATCAGAACTTGATGAATTATCAAGATTCTCC
JMFS066D02+           CTATCCCCACTTTTCTCATCACTGAAAAGATCAGAACTTGATGAATTATCAAGATTCTCC
                      ____________________________________________________________
consensus             CTATCCCCACTTTTCTCATCACTGAAAAGATCAGAACTTGATGAATTATCAAGATTCTCC
 
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JMFF037K06+           ACAATTCTCCTCCTGGCACCCTCTTGCCTAACACCATTCTTGTTAAAACCACTTTGGGAG
rJMFF037K06-          ACAATTCTCCTCCTGGCACCCTCTTGCCTAACACCATTCTTGTTAAAACCACTTTGGGAG
JMFS084F10+           ACAATTCTCCTCCTGGCACCCTCTTGCCTAACACCATTCTTGTTAAAACCACTTTGGGAG
JMFS066D02+           ACAATTCTCCTCCTGGCACCCTCTTGCCTAACACCATTCTTGTTAAAACCACTTTGGGAG
                      ____________________________________________________________
consensus             ACAATTCTCCTCCTGGCACCCTCTTGCCTAACACCATTCTTGTTAAAACCACTTTGGGAG
 
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JMFF037K06+           ATCTTAATAGCAGGACGGATAGAAAAAGATTGCCTTGAAAATGAACCTTGGTGAAGAATT
rJMFF037K06-          ATCTTAATAGCAGGACGGATAGAAAAAGATTGCCTTGAAAATGAACCTTGGTGAAGAATT
JMFS084F10+           ATCTTAATAGCAGGACGGATAGAAAAAGATTGCCTTGAAAATGAACCTTGGTGAAGAATT
JMFS066D02+           ATCTTAATAGCAGGACGGATAGAAAAAGATTGCCTTGAAAATGAACCTTGGTGAAGAATT
                      ____________________________________________________________
consensus             ATCTTAATAGCAGGACGGATAGAAAAAGATTGCCTTGAAAATGAACCTTGGTGAAGAATT
 
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JMFF037K06+           AAGATAATAAATACCAACCCAATAAGCCCATTGAAAATTCCACGAAACTTCCATCGAGCC
rJMFF037K06-          AAGATAATAAATACCAACCCAATAAGCCCATTGAAAATTCCACGAAACTTCCATCGAGCC
JMFS084F10+           AAGATAATAAATACCAACCCAATAAGCCCATTGAAAATTCCACGAAACTTCCATCGAGCC
JMFS066D02+           AAGATAATAAATACCAACCCAATAAGCCCATTGAAAATTCCACGAAACTTCCATCGAGCC
JMFS006B02+                                                     CGAAACTTCCATCGAGCC
                      ____________________________________________________________
consensus             AAGATAATAAATACCAACCCAATAAGCCCATTGAAAATTCCACGAAACTTCCATCGAGCC
 
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JMFF037K06+           TTGAATAAAAACCCATTCAAAATATCCATATTTCTCTCTCTCTTTCTTAATTATTCAAAC
rJMFF037K06-          TTGAATAAAAACCCATTCAAAATATCCATATTTCTCTCTCTCTTTCTTAATTATTCAAAC
JMFS084F10+           TTGAATAAAAACCCATTCAAAATATCCATATTTCTCTCTCTCTTTCTTAATTATTCAAAC
JMFS066D02+           TTGAATAAAAACCCATTCAAAATATCCATATTTCTCTCTCTCTTTCTTAATTATTCAAAC
JMFS006B02+           TTGAATAAAAACCCATTCANAATATCCATATTTCTCTCTCTCTTTCTTAATTATTCAAAC
                      ____________________________________________________________
consensus             TTGAATAAAAACCCATTCAAAATATCCATATTTCTCTCTCTCTTTCTTAATTATTCAAAC
 
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JMFF037K06+           T                                                           
rJMFF037K06-          T                                                           
JMFS084F10+           TCTCAGATTCCCACCAGAAAGCAAAAATATATTTGTATTCAGATTTCACCCAAAGCAAAA
JMFS066D02+           TCTCAGATTCCCACCAGAAAGCAAAAATATATTTGTATTCAGATTTCACCCAAAGCAAAA
JMFS006B02+           TCTCAGATTCCCACCAGAAAGCAAAAATATATTTGTATTCAGATTTCACCCAAAGCAAAA
                      ____________________________________________________________
consensus             TCTCAGATTCCCACCAGAAAGCAAAAATATATTTGTATTCAGATTTCACCCAAAGCAAAA
 
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JMFS084F10+           ATTTCAGGGTGAAAACCCGTTCTAATCTTCAGAGCT                        
JMFS066D02+           ATTTCAGGGTGAAAACCCGTTCTAATCTTCAGAGCT                        
JMFS006B02+           ATTTCAGGGTGAAAACCCGTTCTAATCTTCAGAGCTACAGAAATCAAGAAATGGGCATGA
                      ____________________________________________________________
consensus             ATTTCAGGGTGAAAACCCGTTCTAATCTTCAGAGCTACAGAAATCAAGAAATGGGCATGA
 
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JMFS006B02+           TAAAATCGCCCCCAAAAAAAATTAAAAACTATACAATATTGCAAAATAGCCACCAAACAA
                      ____________________________________________________________
consensus             TAAAATCGCCCCCAAAAAAAATTAAAAACTATACAATATTGCAAAATAGCCACCAAACAA
 
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JMSF003O23+                                 CTTAAAGACAGAGAGAGGGATTGAAGAAGCTTCGTGGT
JMFF031A10+                                 CTTAAAGACAGAGAGAGGGATTGAAGAAGCTTCGTGGT
JMFS006B02+           AAAAAAAAGGTTAGGTTTATACCTTAAAGACAGAGAGAGGGATTGAAGAAGCTTCGTGGT
                      ____________________________________________________________
consensus             AAAAAAAAGGTTAGGTTTATACCTTAAAGACAGAGAGAGGGATTGAAGAAGCTTCGTGGT
 
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JMSF003O23+           GGTTTCTTAGACAAGAAAAAAGGCGATTTTTCTTGGGATTTTTGACTTTTTGTTTTTGGC
JMFF031A10+           GGTTTCTTAGACAAGAAAAAAGGCGATTTTTCTTGGGATTTTTGACTTTTTGTTTTT   
JMFS006B02+           GGTTTCTTAGACAAGAAAAAAGGCGATTTTTCTTGGGATTTTTGACTTTTTGTTTTTGGC
                      ____________________________________________________________
consensus             GGTTTCTTAGACAAGAAAAAAGGCGATTTTTCTTGGGATTTTTGACTTTTTGTTTTTGGC
 
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JMSF003O23+           AGTGATGAAGATGAAGTTAGATACC                                   
JMFS006B02+           AGTGATGAAGATGAAGTTAGATACCAAACTGAGGAGAAGAAAATTTGGGAGGTGAAGAGA
                      ____________________________________________________________
consensus             AGTGATGAAGATGAAGTTAGATACCAAACTGAGGAGAAGAAAATTTGGGAGGTGAAGAGA
 
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JMFS006B02+           CGCGCAGAGCGCATGAAAATGTGGTAGCGACGTTTATCGAACAGACAACCGACGATGGAG
                      ____________________________________________________________
consensus             CGCGCAGAGCGCATGAAAATGTGGTAGCGACGTTTATCGAACAGACAACCGACGATGGAG
 
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JMFS006B02+           GGTTAGATACGACATTGACAATGTTAGTAAGCAGGCCAATCAGTGGCGGACACGTGAAAG
                      ____________________________________________________________
consensus             GGTTAGATACGACATTGACAATGTTAGTAAGCAGGCCAATCAGTGGCGGACACGTGAAAG