Contig 003362:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS003B10Sequence567003362 (5)ref|XP_006361134.1|1e-24PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Solanum tuberosum]
JMFS013H07Sequence613003362 (5)ref|XP_006361134.1|5e-32PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Solanum tuberosum]
JMFS068G02Sequence582003362 (5)ref|XP_006361134.1|5e-29PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Solanum tuberosum]
JMFS164G09Sequence608003362 (5)ref|XP_006361134.1|4e-33PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Solanum tuberosum]
JMSF051K10Sequence681003362 (5)ref|XP_006361134.1|2e-50PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Solanum tuberosum] 765014128 (2)ref|XP_009609281.1|2e-83PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X3 [Nicotiana tomentosiformi

Alignment

This contig is upended


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JMSF051K10+                                                              TTGTCATAG
                      ____________________________________________________________
consensus                                                                TTGTCATAG
 
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JMSF051K10+           CCGTATGCCTGTGTGCTCTCAGGTAATGCACATTATTGGGACTCTCAATGGAATGGCTGT
                      ____________________________________________________________
consensus             CCGTATGCCTGTGTGCTCTCAGGTAATGCACATTATTGGGACTCTCAATGGAATGGCTGT
 
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JMSF051K10+           GATCCNTCAGAAATTTTGTCACAACCCATTTGTTTTTACCCTTTAGCTCTATTCTAAGCA
JMFS068G02+                                                                 TAAGCA
JMFS164G09+                                                  CCTTTAGCTCTATTCTAAGCA
JMFS013H07+                                                  CCTTTAGCTCTATTCTAAGCA
                      ____________________________________________________________
consensus             GATCCNTCAGAAATTTTGTCACAACCCATTTGTTTTTACCCTTTAGCTCTATTCTAAGCA
 
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JMSF051K10+           TAGCACCACAGGTTTCCCCGGTTCTTTTTTTCAAACCATCCCTGGCACATAAGAAATCCC
JMFS068G02+           TAGCACCACAGGTTTCNCCGGTTCTTTTTTTCAAACCATCCCTGGCACATAAGAAATCCC
JMFS164G09+           TAGCACCACAGGTTTCNCCGGTTCTTTTTTTCAAACCATCCCTGGCACATAAGAAATCCC
JMFS013H07+           TAGCACCACAGGTTTCCCCGGTTCTTTTTTTCAAACCATCCCTGGCACATAAGAAATCCC
JMFS003B10+                                    TTTTTTCAAACCATCCCTGGCACATAAGAAATCCC
                      ____________________________________________________________
consensus             TAGCACCACAGGTTTCCCCGGTTCTTTTTTTCAAACCATCCCTGGCACATAAGAAATCCC
 
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JMSF051K10+           GGAAAGTAGAACTCACATCTGCCTTTAATCGACCAAAATGGCTAACACGAGTTCTAAAGC
JMFS068G02+           GGAAAGTAGAACTCACATCTGCCTTTAATCGACCAAAATGGCTAACACGAGTTCTAAAGC
JMFS164G09+           GGAAAGTAGAACTCACATCTGCCTTTAATCGACCAAAATGGCTAACACGAGTTCTAAAGC
JMFS013H07+           GGAAAGTAGAACTCACATCTGCCTTTAATCGACCAAAATGGCTAACACGAGTTCTAAAGC
JMFS003B10+           GGAAAGTAGAACTCACATCTGCCTTTAATCGACCAAAATGGCTAACACGAGTTCTAAAGC
                      ____________________________________________________________
consensus             GGAAAGTAGAACTCACATCTGCCTTTAATCGACCAAAATGGCTAACACGAGTTCTAAAGC
 
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JMSF051K10+           CCATTCGCTTACCGTACTCATCATAGAAAGTCTTAGCTGCATCTTCAGAATGGAATTCCA
JMFS068G02+           CCATTCGCTTACCGTACTCATCATAGAAAGTCTTAGCTGCATCTTCAGAATGGAATTCCA
JMFS164G09+           CCATTCGCTTACCGTACTCATCATAGAAAGTCTTAGCTGCATCTTCAGAATGGAATTCCA
JMFS013H07+           CCATTCGCTTACCGTACTCATCATAGAAAGTCTTAGCTGCATCTTCAGAATGGAATTCCA
JMFS003B10+           CCATTCGCTTACCGTACTCATCATAGAAAGTCTTAGCTGCATCTTCAGAATGGAATTCCA
                      ____________________________________________________________
consensus             CCATTCGCTTACCGTACTCATCATAGAAAGTCTTAGCTGCATCTTCAGAATGGAATTCCA
 
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JMSF051K10+           TTCCCAGATGTGGTTCGACTGCCCTATTCACATCCTGAGTGGAGCTCTCACTGAGTTCAT
JMFS068G02+           TTCCCAGATGTGGTTCGACTGCCCTATTCACATCCTGAGTGGAGCTCTCACTGAGTTCAT
JMFS164G09+           TTCCCAGATGTGGTTCGACTGCCCTATTCACATCCTGAGTGGAGCTCTCACTGAGTTCAT
JMFS013H07+           TTCCCAGATGTGGTTCGACTGCCCTATTCACATCCTGAGTGGAGCTCTCACTGAGTTCAT
JMFS003B10+           TTCCCAGATGTGGTTCGACTGCCCTATTCACATCCTGAGTGGAGCTCTCACTGAGTTCAT
                      ____________________________________________________________
consensus             TTCCCAGATGTGGTTCGACTGCCCTATTCACATCCTGAGTGGAGCTCTCACTGAGTTCAT
 
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JMSF051K10+           CATCTCCGTCATCTGTTACACCACCATGCTGGCCCATGTTTCCTTCTTCCACATCAATCA
JMFS068G02+           CATCTCCGTCATCTGTTACACCACCATGCTGGCCCATGTTTCCTTCTTCCACATCAATCA
JMFS164G09+           CATCTCCGTCATCTGTTACACCACCATGCTGGCCCATGTTTCCTTCTTCCACATCAATCA
JMFS013H07+           CATCTCCGTCATCTGTTACACCACCATGCTGGCCCATGTTTCCTTCTTCCACATCAATCA
JMFS003B10+           CATCTCCGTCATCTGTTACACCACCATGCTGGCCCATGTTTCCTTCTTCCACATCAATCA
                      ____________________________________________________________
consensus             CATCTCCGTCATCTGTTACACCACCATGCTGGCCCATGTTTCCTTCTTCCACATCAATCA
 
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JMSF051K10+           CTTCAACGTCCATATTGGGATAAGATAACCACCTTAGGAAAACATTACATAGAAATAGAC
JMFS068G02+           CTTCAACGTCCATATTGGGATAAGATAACCACCTTAGGAAAACATTACATAGAAATAGAC
JMFS164G09+           CTTCAACGTCCATATTGGGATAAGATAACCACCTTAGGAAAACATTACATAGAAATAGAC
JMFS013H07+           CTTCAACGTCCATATTGGGATAAGATAACCACCTTAGGAAAACATTACATAGAAATAGAC
JMFS003B10+           CTTCAACGTCCATATTGGGATAAGATAACCACCTTAGGAAAACATTACATAGAAATAGAC
                      ____________________________________________________________
consensus             CTTCAACGTCCATATTGGGATAAGATAACCACCTTAGGAAAACATTACATAGAAATAGAC
 
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JMSF051K10+           ACTATGTAGGAGTGTAGGACTCTGCTGCACCTCCTAGAGGAGATCATCCATACCCAAAGC
JMFS068G02+           ACTATGTAGGAGTGTAGGACTCTGCTGCACCTCCTAGAGGAGATCATCCATACCCAAAGC
JMFS164G09+           ACTATGTAGGAGTGTAGGACTCTGCTGCACCTCCTAGAGGAGATCATCCATACCCAAAGC
JMFS013H07+           ACTATGTAGGAGTGTAGGACTCTGCTGCACCTCCTAGAGGAGATCATCCATACCCAAAGC
JMFS003B10+           ACTATGTAGGAGTGTAGGACTCTGCTGCACCTCCTAGAGGAGATCATCCATACCCAAAGC
                      ____________________________________________________________
consensus             ACTATGTAGGAGTGTAGGACTCTGCTGCACCTCCTAGAGGAGATCATCCATACCCAAAGC
 
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JMSF051K10+           AAACCCTGCATAACTGGAATCGGCCATGGATTGGAGGAGAGCAGAATTGTGTATTGGAGA
JMFS068G02+           AAACC--------CTGGAATCGGCCATGGATTGGAGGAGAGCAGAATTGTGTATTGGAGA
JMFS164G09+           AAACC--------CTGGAATCGGCCATGGATTGGAGGAGAGCAGAATTGTGTATTGGAGA
JMFS013H07+           AAACC--------CTGGAATCGGCCATGGATTGGAGGAGAGCAGAATTGTGTATTGGAGA
JMFS003B10+           AAACC--------CTGGAATCGGCCATGGATTGGAGGAGAGCAGAATTGTGCATTGGAGA
                      ____________________________________________________________
consensus             AAACC--------CTGGAATCGGCCATGGATTGGAGGAGAGCAGAATTGTGTATTGGAGA
 
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JMSF051K10+           CTGGAGCTCGAAGCTTTCGGCTTTCAACCAGCGAGACGACGTCGTCCCGGCGGTTGCGGT
JMFS068G02+           CTGGAGCTCGAAGCTTTCGGCTTTCAACCAGCGAGACGACGTCGTCCCGGCGGTTGCGGT
JMFS164G09+           CTGGAGCTCGAAGCTTTCGGCTTTCAACCAGCGAGACGACGTCGTCCCGGCGGTTGCGGT
JMFS013H07+           CTGGAGCTCGAAGCTTTCGGCTTTCAACCAGCGAGACGACGTCGTCCCGGCGGTTGCGGT
JMFS003B10+           CTGGAGCTCGAAGCTTTCGGCTTTCAACCAGCGAGACGACGTCGTCCCGGCGGTTGCGGT
                      ____________________________________________________________
consensus             CTGGAGCTCGAAGCTTTCGGCTTTCAACCAGCGAGACGACGTCGTCCCGGCGGTTGCGGT
 
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JMSF051K10+           GTTAGGGCA                                                   
JMFS068G02+           GTTAGGGCACCGGAGAAGTTTTGCAGTGTGGCGGAGAAGGAGAA                
JMFS164G09+           GTTAGGGCACCGGAGAAGTTTTGCAGTGTGGCGGAGAAGGAGAAGGAAAGCGG       
JMFS013H07+           GTTAGGGCACCGGAGAAGTTTTGCAGTGTGGCGGAGAAGGAGAAGGAAAGCGG       
JMFS003B10+           GTTAGGGCACCGGAGAAGTTTTGCAGTGTGGCGGAGAAGGAGAAGGAAAGCGGGAAGAGA
                      ____________________________________________________________
consensus             GTTAGGGCACCGGAGAAGTTTTGCAGTGTGGCGGAGAAGGAGAAGGAAAGCGGGAAGAGA