Contig 003358:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016B07+                   CAAAAAATTTTATTATAACCCTTTAACATATCAATTATTACAAATTAACGTT
                      ____________________________________________________________
consensus                     CAAAAAATTTTATTATAACCCTTTAACATATCAATTATTACAAATTAACGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016B07+           ACGTAACAAATATGTGACGTGAGGTACGAAAATTACTGTATAAATGTCACAATTCATGGA
JMFN045E05+                                                            CAATTCATGGA
                      ____________________________________________________________
consensus             ACGTAACAAATATGTGACGTGAGGTACGAAAATTACTGTATAAATGTCACAATTCATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016B07+           CTAAAAATATCATTCTTTTTCCTAGAGATTATTAATACAATGAAAATATGAGAGTGACAA
JMFN045E05+           CTAAAAATATCATTCTTTTTCCTAGAGATTATTAATACAATGAAAATATGAGAGTGACAA
                      ____________________________________________________________
consensus             CTAAAAATATCATTCTTTTTCCTAGAGATTATTAATACAATGAAAATATGAGAGTGACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016B07+           AAACCAAAAATCTTCAAAGAATATCACAAACTTATTTTGTTATGAATCAAATTGCATTCA
JMFN045E05+           AAACCAAAAATCTTCAAAGAATATCACAAACTTATTTTGTTATGAATCAAATTGCATTCA
                      ____________________________________________________________
consensus             AAACCAAAAATCTTCAAAGAATATCACAAACTTATTTTGTTATGAATCAAATTGCATTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016B07+           GACTCTCTGAGTATCTGTGACAAAGAAATTATAGAATCAAAAGCAACCAGTAGACTTCAG
JMFN045E05+           GACTCTCTGAGTATCTGTGACAAAGAAATTATAGAATCAAAAGCAACCAGTAGACTTCAG
                      ____________________________________________________________
consensus             GACTCTCTGAGTATCTGTGACAAAGAAATTATAGAATCAAAAGCAACCAGTAGACTTCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016B07+           CTCTTATCCTTCACAAAATCAATTGCTCATAAGCTTTGCACAATCTTGGAGGATCGGAAC
JMFN045E05+           CTCTTATCCTTCACAAAATCAATTGCTCATAAGCTTTGCACAATCTTGGAGGATCGGAAC
                      ____________________________________________________________
consensus             CTCTTATCCTTCACAAAATCAATTGCTCATAAGCTTTGCACAATCTTGGAGGATCGGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016B07+           GGAAACAGATCAATGGCCGCCGTGGTCCTTGGCATGCTGCTGATGCTCGAGATGGCGGCG
JMFF035F21+                   ATCAATGGCCGCCGTGGTCCTTGGCATGCTGCTGATGCTCGAGATGGCGGCG
JMFN045E05+           GGAAACAGATCAATGGCCGCCGTGGTCCTTGGCATGCTGCTGATGCTCGAGATGGCGGCG
                      ____________________________________________________________
consensus             GGAAACAGATCAATGGCCGCCGTGGTCCTTGGCATGCTGCTGATGCTCGAGATGGCGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016B07+           CTCCTCGGGGAGAGCGACGAGGTAGGAGAAAAGCATGCCGCCGAAGCAGACGTGATAGAG
JMFF035F21+           CTCCTCGGGGAGAGCGACGAGGTAGGAGAAAAGCATGCCGCCGAAGCAGACGTGATAGAG
JMFN045E05+           CTCCTCGGGGAGAGCGACGAGGTAGGAGAAAAGCATGCCGCCGAAGCAGACGTGATAGAG
                      ____________________________________________________________
consensus             CTCCTCGGGGAGAGCGACGAGGTAGGAGAAAAGCATGCCGCCGAAGCAGACGTGATAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016B07+           CGGCTCGATGGAGTTAGTCTGGATGTACTTTGCGTTGTAGTTATCCAATCCCCTCTTCAC
JMFF035F21+           CGGCTCGATGGAGTTAGTCTGGATGTACTTTGCGTTGTAGTTATCCAATCCCCTCTTCAC
JMFN045E05+           CGGCTCGATGGAGTTAGTCTGGATGTACTTTGCGTTGTAGTTATCCAATCCCCTCTTCAC
                      ____________________________________________________________
consensus             CGGCTCGATGGAGTTAGTCTGGATGTACTTTGCGTTGTAGTTATCCAATCCCCTCTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016B07+           CGCACTCTTGACGTAATCCATGGACATCATCGGCTTCAGGTGCGCCGGCACTTCCTTCAC
JMFF035F21+           CGCACTCTTGACGTAATCCATGGACATCATCGGCTTCAGGTGCGCCGGCACTTCCTTCAC
JMFN045E05+           CGCACTCTTGACGTAATCCATGGACATCATCGGCTTCAGGTGCGCCGGCACTTCCTTCAC
                      ____________________________________________________________
consensus             CGCACTCTTGACGTAATCCATGGACATCATCGGCTTCAGGTGCGCCGGCACTTCCTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016B07+           TTTCATCCCCTTTATCTCGTTGTAGAAAGTCCTCATC                       
JMFF035F21+           TTTCATCCCCTTTATCTCGTTGTAGAAAGTCCTCATC                       
JMFN045E05+           TTTCATCCCCTTTATCTCGTTGTAGAAAGTCCTCATCCTCATCGCCATTCTCGCCGAGAT
                      ____________________________________________________________
consensus             TTTCATCCCCTTTATCTCGTTGTAGAAAGTCCTCATCCTCATCGCCATTCTCGCCGAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN045E05+           CCGATCAAAACTCTTTGCTCTTTCTTCTTCTCTCTCGCTGCGGTTCGGAACTGTAAATCC
                      ____________________________________________________________
consensus             CCGATCAAAACTCTTTGCTCTTTCTTCTTCTCTCTCGCTGCGGTTCGGAACTGTAAATCC