Contig 003356:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN004N12Sequence594003356 (2)ref|XP_007033515.1|4e-42Uncharacterized protein TCM_019691 [Theobroma cacao] gb|EOY04441.1| Uncharacteri
JMFN044D11Sequence641003356 (2)ref|XP_009630980.1|191PREDICTED: uncharacterized protein LOC104120835 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFN004N12+                                           TTCTTGAAAATAGATCAAATAGACAAAA
                      ____________________________________________________________
consensus                                             TTCTTGAAAATAGATCAAATAGACAAAA
 
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JMFN004N12+           TACAATTTATTAAATTTCACCCAAATAGAAAAAGTAATTTTCTAACATGAGGTCATCAAA
                      ____________________________________________________________
consensus             TACAATTTATTAAATTTCACCCAAATAGAAAAAGTAATTTTCTAACATGAGGTCATCAAA
 
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JMFN004N12+           CACTAGAAAATTTGTGCAGACTGTTTTTTTCCGGCAATCGCCGAAAAGTCGCGGACAAAA
                      ____________________________________________________________
consensus             CACTAGAAAATTTGTGCAGACTGTTTTTTTCCGGCAATCGCCGAAAAGTCGCGGACAAAA
 
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JMFN004N12+           TCGAGGCCGTGCAGCGCCCAAACCAGCGCCACCGAGGAAACGAAGACGGCCACCGGACCA
                      ____________________________________________________________
consensus             TCGAGGCCGTGCAGCGCCCAAACCAGCGCCACCGAGGAAACGAAGACGGCCACCGGACCA
 
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JMFN004N12+           ATCATCCACAACAACACAGGAAACGCCATGCAAAGCGCCCTGTTGCCCACCACGGCCAGC
JMFN044D11+                              GAAACGCCATGCAAAGCGCCCTG-TGCCCACCACGGCCAGC
                      ____________________________________________________________
consensus             ATCATCCACAACAACACAGGAAACGCCATGCAAAGCGCCCTGTTGCCCACCACGGCCAGC
 
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JMFN004N12+           TTGAAACCTCGTTCCAGCACCGTCTGCGTGTACGACGGCGAGGCGGAGAAGTCGCCCCCC
JMFN044D11+           TTGAAACCTCGTTCCAGCACCGTCTGCGTGTACGACGGCGAGGCGGAGAAGTCGCCCCCC
                      ____________________________________________________________
consensus             TTGAAACCTCGTTCCAGCACCGTCTGCGTGTACGACGGCGAGGCGGAGAAGTCGCCCCCC
 
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JMFN004N12+           ACCGCGTTGACCAAGAAGTTGGCGTCGATCAAGCAGGCGATGGCCATGGAGCTGCACATG
JMFN044D11+           ACCGCGTTGACCAAGAAGTTGGCGTCGATCAAGCAGGCGATGGCCATGGAGCTGCACATG
                      ____________________________________________________________
consensus             ACCGCGTTGACCAAGAAGTTGGCGTCGATCAAGCAGGCGATGGCCATGGAGCTGCACATG
 
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JMFN004N12+           AAGCTGGCGAGCAGGAAGATGGCGGCGCAGGCGAATTTGAGGACGATGAGATGGGCGGAA
JMFN044D11+           AAGCTGGCGAGCAGGAAGATGGCGGCGCAGGCGAATTTGAGGACGATGAGATGGGCGGAA
                      ____________________________________________________________
consensus             AAGCTGGCGAGCAGGAAGATGGCGGCGCAGGCGAATTTGAGGACGATGAGATGGGCGGAA
 
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JMFN004N12+           TGTAGGCCAAGTAGTGGGCCGTGGAAGAGGTGGGAGGCGGCGTTGAAGGCGTTGTTGGTG
JMFN044D11+           TGTAGGCCAAGTAGTGGGCCGTGGAAGAGGTGGGAGGCGGCGTTGAAGGCGTTGTTGGTG
                      ____________________________________________________________
consensus             TGTAGGCCAAGTAGTGGGCCGTGGAAGAGGTGGGAGGCGGCGTTGAAGGCGTTGTTGGTG
 
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JMFN004N12+           AGAGCCGCCAGTGAAAGGACGATGATCACTGTGATTGTGGCCGTCAGGATTGACGCCATT
JMFN044D11+           AGAGCCGCCAGTGAAAGGACGATGATCACTGTGATTGTGGCCGTCAGGATTGACGCCATT
                      ____________________________________________________________
consensus             AGAGCCGCCAGTGAAAGGACGATGATCACTGTGATTGTGGCCGTCAGGATTGACGCCATT
 
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JMFN004N12+           AATGTGTTTCTCAGG                                             
JMFN044D11+           AATGTGTTTCTCAGGCTTTGCACCGCTAACATACCCTTCTTGTCATTTCCCTGATTGTAA
                      ____________________________________________________________
consensus             AATGTGTTTCTCAGGCTTTGCACCGCTAACATACCCTTCTTGTCATTTCCCTGATTGTAA
 
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JMFN044D11+           TCCTGAAGCCAGGACCTCCGCTTGAGCATGTTGAGGCCGATGGTGGTGGCGGCGGGTTTG
                      ____________________________________________________________
consensus             TCCTGAAGCCAGGACCTCCGCTTGAGCATGTTGAGGCCGATGGTGGTGGCGGCGGGTTTG
 
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JMFN044D11+           TGCTTGAGGCGGTGGCAGAGATAGGCATGGTAGCCGATGGTGAGGGAGAGACTCAAGGGA
                      ____________________________________________________________
consensus             TGCTTGAGGCGGTGGCAGAGATAGGCATGGTAGCCGATGGTGAGGGAGAGACTCAAGGGA
 
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JMFN044D11+           ACCAAGATGGTGTCCAAGAACAAAATGAATGCCATTTTTCATGCCAACTAACTAACTAGG
                      ____________________________________________________________
consensus             ACCAAGATGGTGTCCAAGAACAAAATGAATGCCATTTTTCATGCCAACTAACTAACTAGG
 
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JMFN044D11+           ATATATTCACTCCATCTGCAGATCGATCAGATCAGATCAGAGTGTATTATATCGTGGGCG
                      ____________________________________________________________
consensus             ATATATTCACTCCATCTGCAGATCGATCAGATCAGATCAGAGTGTATTATATCGTGGGCG