Contig 003355:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN017J18Sequence610003355 (3)ref|XP_011078202.1|124PREDICTED: uncharacterized protein LOC105161997 [Sesamum indicum]
JMFN018N24Sequence552003355 (3)ref|XP_011078202.1|125PREDICTED: uncharacterized protein LOC105161997 [Sesamum indicum]
JMFN043C04Sequence576003355 (3)ref|XP_011078202.1|124PREDICTED: uncharacterized protein LOC105161997 [Sesamum indicum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017J18+                                                          TGCCCGACGAACC
                      ____________________________________________________________
consensus                                                            TGCCCGACGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017J18+           CTGACGTCACTCCTAACCGCCCCACGTCATTTCCCGGCGTCTCATCACCTCCCTCCGCCG
JMFN018N24+                                                     CATCACCTCCCTCCGCCG
JMFN043C04+                                   CGTCATTTCCCGGCGTCTCATCACCTCCCTCCGCCG
                      ____________________________________________________________
consensus             CTGACGTCACTCCTAACCGCCCCACGTCATTTCCCGGCGTCTCATCACCTCCCTCCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017J18+           GAGACACCTTCGCTGCGTTCCCGGCGGACAACCGCTTCGCGGGGGACTTCTTAGCCGCCA
JMFN018N24+           GAGACACCTTCGCTGCGTTCCCGGCGGACAACCGCTTCGCGGGGGACTTCTTAGCCGCCA
JMFN043C04+           GAGACACCTTCGCTGCGTTCCCGGCGGACAACCGCTTCGCGGGGGACTTCTTAGCCGCCA
                      ____________________________________________________________
consensus             GAGACACCTTCGCTGCGTTCCCGGCGGACAACCGCTTCGCGGGGGACTTCTTAGCCGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017J18+           CGAGGAGGACCGCCACATCGGCGGCGGTGATAACGGAGCTCAACCTCTTCATCGGGAACG
JMFN018N24+           CGAGGAGGACCGCCACATCGGCGGCGGTGATAACGGAGCTCAACCTCTTCATCGGGAACG
JMFN043C04+           CGAGGAGGACCGCCACATCGGCGGCGGTGATAACGGAGCTCAACCTCTTCATCGGGAACG
                      ____________________________________________________________
consensus             CGAGGAGGACCGCCACATCGGCGGCGGTGATAACGGAGCTCAACCTCTTCATCGGGAACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017J18+           CGGCGTAGACGTTCCCGGACTCCAAGTCTTGGTCCGCCGACAGAGGCGAGAATCTCCGGC
JMFN018N24+           CGGCGTAGACGTTCCCGGACTCCAAGTCTTGGTCCGCCGACAGAGGCGAGAATCTCCGGC
JMFN043C04+           CGGCGTAGACGTTCCCGGACTCCAAGTCTTGGTCCGCCGACAGAGGCGAGAATCTCCGGC
                      ____________________________________________________________
consensus             CGGCGTAGACGTTCCCGGACTCCAAGTCTTGGTCCGCCGACAGAGGCGAGAATCTCCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017J18+           CGGCGGTCAAAGATCCGGCGTTGACCAAGAAGTGGGTTGGGTGTTCCAGCATGATCTCCG
JMFN018N24+           CGGCGGTCAAAGATCCGGCGTTGACCAAGAAGTGGGTTGGGTGTTCCAGCATGATCTCCG
JMFN043C04+           CGGCGGTCAAAGATCCGGCGTTGACCAAGAAGTGGGTTGGGTGTTCCAGCATGATCTCCG
                      ____________________________________________________________
consensus             CGGCGGTCAAAGATCCGGCGTTGACCAAGAAGTGGGTTGGGTGTTCCAGCATGATCTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017J18+           CCGCCTTGACCGGCTCTCGAAGCCGCCGGATTTCCCCGCCGGGGAGGATCACTCTTGCTG
JMFN018N24+           CCGCCTTGACCGGCTCTCGAAGCCGCCGGATTTCCCCGCCGGGGAGGATCACTCTTGCTG
JMFN043C04+           CCGCCTTGACCGGCTCTCGAAGCCGCCGGATTTCCCCGCCGGGGAGGATCACTCTTGCTG
                      ____________________________________________________________
consensus             CCGCCTTGACCGGCTCTCGAAGCCGCCGGATTTCCCCGCCGGGGAGGATCACTCTTGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017J18+           CCGCGGCTTTTCTCCCCTTTCTTGCACTGCACGAAACAAGATTTCCCATGTTGAATTTGA
JMFN018N24+           CCGCGGCTTTTCTCCCCTTTCTTGCACTGCACGAAACAAGATTTCCCATGTTGAATTTGA
JMFN043C04+           CCGCGGCTTTTCTCCCCTTTCTTGCACTGCACGAAACAAGATTTCCCATGTTGAATTTGA
                      ____________________________________________________________
consensus             CCGCGGCTTTTCTCCCCTTTCTTGCACTGCACGAAACAAGATTTCCCATGTTGAATTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017J18+           ACTTGGTTTTTGCCCTTATTTCTTCGAGGCAGAACTGTAGAGATAAATCTCTTGTGCGTA
JMFN018N24+           ACTTGGTTTTTGCCCTTATTTCTTCGAGGCAGAACTGTAGAGATAAATCTCTTGTGCGTA
JMFN043C04+           ACTTGGTTTTTGCCCTTATTTCTTCGAGGCAGAACTGTAGAGATAAATCTCTTGTGCGTA
                      ____________________________________________________________
consensus             ACTTGGTTTTTGCCCTTATTTCTTCGAGGCAGAACTGTAGAGATAAATCTCTTGTGCGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017J18+           GAGTCAATAGCAGAAACTGATTAAGAGACTGTTTGAATGAGTCGCGATTTACCTTCTCCA
JMFN018N24+           GAGTCAATAGCAGAAACTGATTAAGAGACTGTTTGAATGAGTCGCGATTTACCTTCTCCA
JMFN043C04+           GAGTCAATAGCAGAAACTGATTAAGAGACTGTTTGAATGAGTCGCGATTTACCTTCTCCA
                      ____________________________________________________________
consensus             GAGTCAATAGCAGAAACTGATTAAGAGACTGTTTGAATGAGTCGCGATTTACCTTCTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017J18+           ACTACTCTTTAGCAGGCCGGGATTATGGGGACTATAAATAAAAATAAAGAAATT      
JMFN018N24+           ACTACTCTTTAGCAGGCCGGGATTATGGGGACTATAAATAAAAATAAAGAAATT      
JMFN043C04+           ACTACTCTTTAGCAGGCCGGGATTATGGGGACTATAAATAAAAATAAAGAAATTGTTGAA
                      ____________________________________________________________
consensus             ACTACTCTTTAGCAGGCCGGGATTATGGGGACTATAAATAAAAATAAAGAAATTGTTGAA