Contig 003352:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN015B22Sequence566003352 (4)ref|NP_001233886.1|1e-18AP2 transcription factor SlAP2c [Solanum lycopersicum] gb|AEF28820.1| AP2 transc
JMFN042F09Sequence620003352 (4)ref|XP_009589846.1|3e-106PREDICTED: floral homeotic protein APETALA 2 [Nicotiana tomentosiformis]
JMSF025G19Sequence685019997gb|AIS71911.1|9e-23AP2 transcription factor SlAP2c [Nicotiana tabacum]785003352 (4)ref|XP_009589846.1|2e-54PREDICTED: floral homeotic protein APETALA 2 [Nicotiana tomentosiformis]
JMSF027F02Sequence598005122 (2)emb|CDP02515.1|6e-14unnamed protein product [Coffea canephora]692003352 (4)ref|NP_001233886.1|2e-36AP2 transcription factor SlAP2c [Solanum lycopersicum] gb|AEF28820.1| AP2 transc

Alignment

This contig is upended


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rJMSF027F02-                              CATTCTCAGATAACATCAATTCCTTGAGGTTTTCAAGGTT
JMFN015B22+                               CATTCTCAGATAACATCAATTCCTTGAGGTTTTCAAGGTT
rJMSF025G19-                     GTGGCAGTACATTCTCAGATAACATCAATTCCTTGAGGTTTTCAAGGTT
                      ____________________________________________________________
consensus                        GTGGCAGTACATTCTCAGATAACATCAATTCCTTGAGGTTTTCAAGGTT
 
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rJMSF027F02-          ACAATATAATAAAGACAATAATAATGTATCCTTAAAAATGTAATTGGATAGGATCAATAA
JMFN015B22+           ACAATATAATAAAGCCAATAATAATGTATCCTTAAAAATGTAATTGGATAGGATCAATAA
rJMSF025G19-          ACAATATAATAAAGACAATAATAATGTATCCTTAAAAATGTAATTGGATAGGATCAATAA
                      ____________________________________________________________
consensus             ACAATATAATAAAGACAATAATAATGTATCCTTAAAAATGTAATTGGATAGGATCAATAA
 
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rJMSF027F02-          TTCAAGGAGGTCTCATGAAAGAGTAGTGGAAGCCATTATTTTTGTGATGAGGCCAATTCT
JMFN015B22+           TTCAAGGAGGTCTCATGAAAGAGTAGTGGAAGCCATTATTTTTGTGATGAGGCCAATTCT
rJMSF025G19-          TTCAAGGAGGTCTCATGAAAGAGTAGTGGAAGCCATTATTTTTGTGATGAGGCCAATTCT
                      ____________________________________________________________
consensus             TTCAAGGAGGTCTCATGAAAGAGTAGTGGAAGCCATTATTTTTGTGATGAGGCCAATTCT
 
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rJMSF027F02-          GAGGTCTTAAGGTCTGCTGAGGGAATCCTGATGATGCTGCAGCAGTTGTTGCAAATAGCT
JMFN015B22+           GAGGTCTTAAGGTCTGCTGAGGGAATCCTGATGATGCTGCAGCAGTTGTTGCAAATAGCT
rJMSF025G19-          GAGGTCTTAAGGTCTGCTGAGGGAATCCTGATGATGCTGCAGCAGTTGTTGCAAATAGCT
                      ____________________________________________________________
consensus             GAGGTCTTAAGGTCTGCTGAGGGAATCCTGATGATGCTGCAGCAGTTGTTGCAAATAGCT
 
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rJMSF027F02-          GAGGGGGAGGGGGGTTTGATGGGTGCCATTGCGGAATGTGGTTGCTGCTCGTTGTGGTCG
JMFN015B22+           GAGGGGGAGGGGGGTTTGATGGGTGCCATTGCGGAATGTGGTTGCTGCTCGTTATGGTCG
rJMSF025G19-          GAGGGGGAGGGGGGTTTGATGGGTGCCATTGCGGAATGTGGTTGCTGCTCGTTGTGGTCG
                      ____________________________________________________________
consensus             GAGGGGGAGGGGGGTTTGATGGGTGCCATTGCGGAATGTGGTTGCTGCTCGTTGTGGTCG
 
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rJMSF027F02-          AGAGCGATAGGTCCCCGATGCCCCCCCATCCAATTCGTCCCCCGCTGTTACTGCTGCTGG
JMFN015B22+           AGAGCGATAGGTCCCCGATGCCCCCCCATCCAATTCGTCCCCCGCTGTTACTGCTGCTGG
rJMSF025G19-          AGAGCGATAGGTCCCCGATGCCCCCCCATCCAATTCGTCCCCCGCTGTTACTGCTGCTGG
                      ____________________________________________________________
consensus             AGAGCGATAGGTCCCCGATGCCCCCCCATCCAATTCGTCCCCCGCTGTTACTGCTGCTGG
 
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rJMSF027F02-          GAAATTGATAGCTGGGTGAGCTCAAGTGTGGCGAAAACATTTGCAGCATGTGGGATTCGC
JMFN015B22+           GAAATTGATAGCTGGGTGAGCTCAAGTGTGGCGAAAACATTTGCAGCATGTGGGATTCGC
rJMSF025G19-          GAAATTGATAGCTGGGTGAGCTCAAGTGTGGCGAAAACATTTGCAGCATGTGGGATTCGC
                      ____________________________________________________________
consensus             GAAATTGATAGCTGGGTGAGCTCAAGTGTGGCGAAAACATTTGCAGCATGTGGGATTCGC
 
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rJMSF027F02-          CACCCGGTTTCACAAAATGACCATATGTANAGTGGATTTGGTCATTGCTAGCAGGCGAAT
JMFN015B22+           CACCCGGTTTCACAAAATGACCATATGTAGAGTGGATTTGGTCATTGCTAGCAGGCGAAT
rJMSF025G19-          CACCCGGTTTCACAAAATGACCATATGTAGAGTGGATTTGGTCATTGCTAGCAGGCGAAT
JMFN042F09+                                             GATTTGGTCATTGCTAGCAGGCGAAT
                      ____________________________________________________________
consensus             CACCCGGTTTCACAAAATGACCATATGTAGAGTGGATTTGGTCATTGCTAGCAGGCGAAT
 
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rJMSF027F02-          GCAGGTGCGTTCGGCTCAGGAGCTGCATTGCTTCTGCCTCGTTGTACCCCTCCCTCCTTC
JMFN015B22+           GCAGGTGCGTTCGGCTCAGGAGCTGCATTGCTTCTGCCTCGTTGTACCCCTCCCTCCTTC
rJMSF025G19-          GCAGGTGCGTTCGGCTCAGGAGCTGCATTGCTTCTGCCTCGTTGTACCCCTCCCTCCTTC
JMFN042F09+           GCAGGTGCGTTCGGCTCAGGAGCTGCATTGCTTCTGCCTCGTTGTACCCCTCCCTCCTTC
                      ____________________________________________________________
consensus             GCAGGTGCGTTCGGCTCAGGAGCTGCATTGCTTCTGCCTCGTTGTACCCCTCCCTCCTTC
 
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rJMSF027F02-          GCTCACCTGGAATCGCCTGTTGCTTATTAGACACTACTGCTGGCTGCCTCCAGTCCATCT
JMFN015B22+           GCTCACCTGGAATCGC------CT                                    
rJMSF025G19-          GCTCACCTGGAATCGC------CTTATTAGACACTACTGCTGGCTGCCTCCAGTCCATCT
JMFN042F09+           GCTCACCTGGAATCGC------CTTATTAGACACTACTGCTGGCTGCCTCCAGTCCATCT
                      ____________________________________________________________
consensus             GCTCACCTGGAATCGC------CTTATTAGACACTACTGCTGGCTGCCTCCAGTCCATCT
 
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rJMSF027F02-          CAAACTGCATTGCAGATGAGTTGTGACCCACATTTTCTTCACCTTGCTTCGAGCTCGAGC
rJMSF025G19-          CAAACTGCATTGCAGATGAGTTGTGACCCACATTTTCTTCACCTTGCTTCGAGCTCGAGC
JMFN042F09+           CAAACTGCATTGCAGATGAGTTGTGACCCACATTTTCTTCACCTTGCTTCGAGCTCGAGC
                      ____________________________________________________________
consensus             CAAACTGCATTGCAGATGAGTTGTGACCCACATTTTCTTCACCTTGCTTCGAGCTCGAGC
 
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rJMSF027F02-          TCCCCAGGCTCAAATCGAGATTGTGATCAGCTGCATTCTCACAAGTCTCAGT        
rJMSF025G19-          TCCCCAGGCTCAAATCGAGATTGTGATCAGCTGCATTCTCACAAGTCTCAGTCGCGGAAC
JMFN042F09+           TCCCCAGGCTCAAATCGAGATTGTGATCAGCTGCATTCTCACAAGTCTCAGTCGCGGAAC
                      ____________________________________________________________
consensus             TCCCCAGGCTCAAATCGAGATTGTGATCAGCTGCATTCTCACAAGTCTCAGTCGCGGAAC
 
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rJMSF025G19-          TAAGTTCATTCTCATATATACTGGGATCAAAATTTGTAACTGCATCCTTGCCATTGCATT
JMFN042F09+           TAAGTTCATTCTCATATATACTGGGATCAAAATTTGTAACTGCATCCTTGCCATTGCATT
                      ____________________________________________________________
consensus             TAAGTTCATTCTCATATATACTGGGATCAAAATTTGTAACTGCATCCTTGCCATTGCATT
 
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rJMSF025G19-          TTATGGCAGCTTTATCATAAGC                                      
JMFN042F09+           TTATGGCAGCTTTATCATAAGCCCTGGCAGCTTCAATTTCAGTATCAAAGAGACCCAGAT
                      ____________________________________________________________
consensus             TTATGGCAGCTTTATCATAAGCCCTGGCAGCTTCAATTTCAGTATCAAAGAGACCCAGAT
 
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JMFN042F09+           AAACATACTTTTTCCCCAGGAATTGGCCCATTCTAGCCTCCCATCTACCGCATTTATGCA
                      ____________________________________________________________
consensus             AAACATACTTTTTCCCCAGGAATTGGCCCATTCTAGCCTCCCATCTACCGCATTTATGCA
 
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JMFN042F09+           AAGTGACGCCTCTATATTTGGAACTCCCCCGGGGAAAGCCGGTGCTTTGTCGCCGGAGAA
                      ____________________________________________________________
consensus             AAGTGACGCCTCTATATTTGGAACTCCCCCGGGGAAAGCCGGTGCTTTGTCGCCGGAGAA
 
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JMFN042F09+           CATGGACGAATTCTTCCTTGGTTAAATTGCTCATCTGTTTTAAGTCGTCTTCGTAATCTT
                      ____________________________________________________________
consensus             CATGGACGAATTCTTCCTTGGTTAAATTGCTCATCTGTTTTAAGTCGTCTTCGTAATCTT
 
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JMFN042F09+           CAAGGCTGAAATTTATGTCGGCTTCCACTCCCCGGAACTTGATTGCTGCCCTATCGTATG
                      ____________________________________________________________
consensus             CAAGGCTGAAATTTATGTCGGCTTCCACTCCCCGGAACTTGATTGCTGCCCTATCGTATG