Contig 003345:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN010O02Sequence627003345 (5)ref|XP_009619035.1|1e-38PREDICTED: nuclear transcription factor Y subunit C-1-like [Nicotiana tomentosi
JMFN036K17Sequence622003345 (5)ref|XP_009779358.1|5e-78PREDICTED: nuclear transcription factor Y subunit C-1-like [Nicotiana sylvestri
JMFN041N12Sequence610003345 (5)ref|XP_009619035.1|6e-72PREDICTED: nuclear transcription factor Y subunit C-1-like [Nicotiana tomentosi
JMFN043P05Sequence622003345 (5)ref|XP_009779358.1|6e-90PREDICTED: nuclear transcription factor Y subunit C-1-like [Nicotiana sylvestri
JMFS117A05Sequence594003345 (5)ref|XP_010550738.1|1e-73PREDICTED: nuclear transcription factor Y subunit C-1-like [Tarenaya hasslerian

Alignment

This contig is upended


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JMFN010O02+                                              TCCCCAGAAGGATTATTTCAAGAAA
                      ____________________________________________________________
consensus                                                TCCCCAGAAGGATTATTTCAAGAAA
 
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JMFN010O02+           AAAACAAAGAGTTACTAATCAAAATCCAGTTTTTATACATATATCTAATACCATGGTTAA
                      ____________________________________________________________
consensus             AAAACAAAGAGTTACTAATCAAAATCCAGTTTTTATACATATATCTAATACCATGGTTAA
 
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JMFN010O02+           CACAGTATCCACAGACACTAGTTATAAGGTGCATTCATTTTTGCAATTTAGAAGAGAAAC
                      ____________________________________________________________
consensus             CACAGTATCCACAGACACTAGTTATAAGGTGCATTCATTTTTGCAATTTAGAAGAGAAAC
 
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JMFN010O02+           TCCAAATTGAATTAGAGAGACGGGGCAAGGCAGCTTCCTTTTGCCACCAATCATCCGAAA
JMFN041N12+           TCCAAATTGAATTAGAGAGACGGGGCAAGGCAGCTTCCTTTTGCCACCAATCATCCGAAA
                      ____________________________________________________________
consensus             TCCAAATTGAATTAGAGAGACGGGGCAAGGCAGCTTCCTTTTGCCACCAATCATCCGAAA
 
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JMFN010O02+           ACAACCCCCTCAGCCTTGGCCGTCGAGGTTTCCCTGGCCACTGCTGCCTCCACTGGCGTA
JMFN041N12+           ACAACCCCCTCAGCCTTGGCCGTCGAGGTTTCCCTGGCCACTGCTGCCTCCACTGGCGTA
                      ____________________________________________________________
consensus             ACAACCCCCTCAGCCTTGGCCGTCGAGGTTTCCCTGGCCACTGCTGCCTCCACTGGCGTA
 
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JMFN010O02+           GGAATTGTCCTCCTGAGGCTGCCACACGGACTGCCATGCCTGCGACGGCGGTGGCGGAGG
JMFN041N12+           GGAATTGTCCTCCTGAGGCTGCCACACGGACTGCCATGCCTGCGACGGCGGTGGCGGAGG
JMFN043P05+                                                      GACGGCGGTGGCGGAGG
                      ____________________________________________________________
consensus             GGAATTGTCCTCCTGAGGCTGCCACACGGACTGCCATGCCTGCGACGGCGGTGGCGGAGG
 
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JMFN010O02+           CTGGACGTACATGGACGGATCCACACCAGGCACGGCGGGCCTTCCAATCATGACACCGGG
JMFN041N12+           CTGGACGTACATGGACGGATCCACACCAGGCACGGCGGGCCTTCCAATCATGACACCGGG
JMFN043P05+           CTGGACGTACATGGACGGATCCACACCAGGCACGGCGGGCCTTCCAATCATGACACCGGG
JMFN036K17+                                                 GCCTTCCAATCATGACACCGGG
                      ____________________________________________________________
consensus             CTGGACGTACATGGACGGATCCACACCAGGCACGGCGGGCCTTCCAATCATGACACCGGG
 
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JMFN010O02+           GGGCGTGGGCTGGCCCATTGGCGGGTAGTAGTACGGGACGCCGCTAGCGGTGGAGCCGGC
JMFN041N12+           GGGCGTGGGCTGGCCCATTGGCGGGTAGTAGTACGGGACGCCGCTAGCGGTGGAGCCGGC
JMFN043P05+           GGGCGTGGGCTGGCCCATTGGCGGGTAGTAGTACGGGACGCCGCTAGCGGTGGAGCCGGC
JMFS117A05+             GCGTGGGCTGGCCCATTGGCGGGTAGTAGTACGGGACGCCGCTAGCGGTGGAGCCGGC
JMFN036K17+           GGGCGTGGGCTGGCCCATTGGCGGGTAGTAGTACGGGACGCCGCTAGCGGTGGAGCCGGC
                      ____________________________________________________________
consensus             GGGCGTGGGCTGGCCCATTGGCGGGTAGTAGTACGGGACGCCGCTAGCGGTGGAGCCGGC
 
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JMFN010O02+           GACCATTCCGGCGGCGGCGGCGGCGGCGGGGCCGACGAGGGCAGCAGTCTCGTCCTTGAT
JMFN041N12+           GACCATTCCGGCGGCGGCGGCGGCGGCGGGGCCGACGAGGGCAGCAGTCTCGTCCTTGAT
JMFN043P05+           GACCATTCCGGCGGCGGCGGCGGCGGCGGGGCCGACGAGGGCAGCAGTCTCGTCCTTGAT
JMFS117A05+           GACCATTCCGNCGNCGGCGGCGGCGGCGGGGCCGACGAGGGCAGCAGTCTCGTCCTTGAT
JMFN036K17+           GACCATTCCGGCGGCGGCGGCGGCGGCGGGGCCGACGAGGGCAGCAGTCTCGTCCTTGAT
                      ____________________________________________________________
consensus             GACCATTCCGGCGGCGGCGGCGGCGGCGGGGCCGACGAGGGCAGCAGTCTCGTCCTTGAT
 
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JMFN010O02+           CTCGTCGCGGGGCACAATGTCGACGAGGAAATCGAAGATGTCAGTGCGGGTGATGGCCGC
JMFN041N12+           CTCGTCGCGGGGCACAATGTCGACGAGGAAATCGAAGATGTCAGTGCGGGTGATGGCCGC
JMFN043P05+           CTCGTCGCGGGGCACAATGTCGACGAGGAAATCGAAGATGTCAGTGCGGGTGATGGCCGC
JMFS117A05+           CTCGTCGCGGGGCACAATGTCGACGAGGAAATCGAAGATGTCAGTGCGGGTGATGGCCGC
JMFN036K17+           CTCGTCGCGGGGCACAATGTCGACGAGGAAATCGAAGATGTCAGTGCGGGTGATGGCCGC
                      ____________________________________________________________
consensus             CTCGTCGCGGGGCACAATGTCGACGAGGAAATCGAAGATGTCAGTGCGGGTGATGGCCGC
 
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JMFN010O02+           GGCGATGTCGTTCTTCTGTAGGGTGCGGCGCTTGTTCTCCTCGGCGTGGAGCCAGGAGCG
JMFN041N12+           GGCGATGTCGTTCTTCTGTAGGGTGCGGCGCTTGTTCTCCTCGGCGTGGAGCCAGGAGCG
JMFN043P05+           GGCGATGTCGTTCTTCTGTAGGGTGCGGCGCTTGTTCTCCTCGGCGTGGAGCCAGGAGCG
JMFS117A05+           GGCGATGTCGTTCTTCTGTAGGGTGCGGCGCTTGTTCTCCTCGGCGTGGAGCCAGGAGCG
JMFN036K17+           GGCGATGTCGTTCTTCTGTAGGGTGCGGCGCTTGTTCTCCTCGGCGTGGAGCCAGGAGCG
                      ____________________________________________________________
consensus             GGCGATGTCGTTCTTCTGTAGGGTGCGGCGCTTGTTCTCCTCGGCGTGGAGCCAGGAGCG
 
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JMFN010O02+           AA                                                          
JMFN041N12+           AATGGTGAGCTCCAGAATGAAGAGCTCGCAGGCCTTGGCGAACAGGATGGGCGCCTCCGC
JMFN043P05+           AATGGTGAGCTCCAGAATGAAGAGCTCGCAGGCCTTGGCGAACAGGATGGGCGCCTCCGC
JMFS117A05+           AATGGTGAGCTCCAGAATGAAGAGCTCGCAGGCCTTGGCGAACAGGATGGGCGCCTCCGC
JMFN036K17+           AATGGTGAGCTCCAGAATGAAGAGCTCGCAGGCCTTGGCGAACAGGATGGGCGCCTCCGC
                      ____________________________________________________________
consensus             AATGGTGAGCTCCAGAATGAAGAGCTCGCAGGCCTTGGCGAACAGGATGGGCGCCTCCGC
 
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JMFN041N12+           GGAGATCATACGCACGTCCTCGTCCGCCTTCATGATCTTCTTGATGCGGGCCAGAGGGAG
JMFN043P05+           GGAGATCATACGCACGTCCTCGTCCGCCTTCATGATCTTCTTGATGCGGGCCAGAGGGAG
JMFS117A05+           GGAGATCATACGCACGTCCTCGTCCGCCTTCATGATCTTCTTGATGCGGGCCAGAGGGAG
JMFN036K17+           GGAGATCATACGCACGTCCTCGTCCGCCTTCATGATCTTCTTGATGCGGGCCAGAGGGAG
                      ____________________________________________________________
consensus             GGAGATCATACGCACGTCCTCGTCCGCCTTCATGATCTTCTTGATGCGGGCCAGAGGGAG
 
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JMFN041N12+           CTGGTGGTTC                                                  
JMFN043P05+           CTGGTGGTTCTTGGAGTCGTTCACCTGCTCGATCTCCTGCCGCTGGTACGTCCAGAACAT
JMFS117A05+           CTGGTGGTTCTTGAAGTCGTTCACCTGCTCGATCTCCTGCCGCTGGTACGTCCAGAACAT
JMFN036K17+           CTGGTGGTTCTTGAAGTCGTTCACCTGCTCGATCTCCTGCCGCTGGTACGTCCAGAACAT
                      ____________________________________________________________
consensus             CTGGTGGTTCTTGAAGTCGTTCACCTGCTCGATCTCCTGCCGCTGGTACGTCCAGAACAT
 
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JMFN043P05+           TTGCAGCTGCTGCTGCTGTTGCTGGAGGAGATGGTGGTACGGCGGCTGCGCCGGCGGGTA
JMFS117A05+           TTGCAGCTGCTGCTGCTGTTGCTGGAGGAGATGGTGGTACGGCGGCTGCGCCGGCGGGTA
JMFN036K17+           TTGCAGCTGCTGCTGCTGTTGCTGGAGGAGATGGTGGTACGGCGGCTGCGCCGGCGGGTA
                      ____________________________________________________________
consensus             TTGCAGCTGCTGCTGCTGTTGCTGGAGGAGATGGTGGTACGGCGGCTGCGCCGGCGGGTA
 
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JMFN043P05+           CCCGCCGGCCGTCTGAGCTGCGGCTGCGGCTGCAGCCGCCGCTGCTTGCTGAGGGCTGTT
JMFS117A05+           CCCGCCGGCCGTCTGAGCTGCGGCTGCGGCTGCAGCCGCCGCTGCTTGCTGAGGGCTGTT
JMFN036K17+           CCCGCCGGCCGTCTGAGCTGCGGCTGCGGCTACAGCCGCCGCTGCTTGCTGAGGGCTGTT
                      ____________________________________________________________
consensus             CCCGCCGGCCGTCTGAGCTGCGGCTGCGGCTGCAGCCGCCGCTGCTTGCTGAGGGCTGTT
 
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JMFN043P05+           CTCCA                                                       
JMFS117A05+           CTCCATTGTTCTTCACAGAAAGAAATGGAGAGAGAGAGAGAGAAAGAGAAATATGA    
JMFN036K17+           CTCCATTGTTCTTCACAGAAAGAAATGGAGAGAGAGAGAGAGAAAGAGAAATATGAGAAA
                      ____________________________________________________________
consensus             CTCCATTGTTCTTCACAGAAAGAAATGGAGAGAGAGAGAGAGAAAGAGAAATATGAGAAA