Contig 003345:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN010O02Sequence627003345 (5)ref|XP_009619035.1|1e-38PREDICTED: nuclear transcription factor Y subunit C-1-like [Nicotiana tomentosi
JMFN036K17Sequence622003345 (5)ref|XP_009779358.1|5e-78PREDICTED: nuclear transcription factor Y subunit C-1-like [Nicotiana sylvestri
JMFN041N12Sequence610003345 (5)ref|XP_009619035.1|6e-72PREDICTED: nuclear transcription factor Y subunit C-1-like [Nicotiana tomentosi
JMFN043P05Sequence622003345 (5)ref|XP_009779358.1|6e-90PREDICTED: nuclear transcription factor Y subunit C-1-like [Nicotiana sylvestri
JMFS117A05Sequence594003345 (5)ref|XP_010550738.1|1e-73PREDICTED: nuclear transcription factor Y subunit C-1-like [Tarenaya hasslerian

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN010O02+ TCCCCAGAAGGATTATTTCAAGAAA
                      ____________________________________________________________
consensus TCCCCAGAAGGATTATTTCAAGAAA
 
. : . : . : . : . : . :
JMFN010O02+ AAAACAAAGAGTTACTAATCAAAATCCAGTTTTTATACATATATCTAATACCATGGTTAA
                      ____________________________________________________________
consensus AAAACAAAGAGTTACTAATCAAAATCCAGTTTTTATACATATATCTAATACCATGGTTAA
 
. : . : . : . : . : . :
JMFN010O02+ CACAGTATCCACAGACACTAGTTATAAGGTGCATTCATTTTTGCAATTTAGAAGAGAAAC
                      ____________________________________________________________
consensus CACAGTATCCACAGACACTAGTTATAAGGTGCATTCATTTTTGCAATTTAGAAGAGAAAC
 
. : . : . : . : . : . :
JMFN010O02+ TCCAAATTGAATTAGAGAGACGGGGCAAGGCAGCTTCCTTTTGCCACCAATCATCCGAAA
JMFN041N12+ TCCAAATTGAATTAGAGAGACGGGGCAAGGCAGCTTCCTTTTGCCACCAATCATCCGAAA
                      ____________________________________________________________
consensus TCCAAATTGAATTAGAGAGACGGGGCAAGGCAGCTTCCTTTTGCCACCAATCATCCGAAA
 
. : . : . : . : . : . :
JMFN010O02+ ACAACCCCCTCAGCCTTGGCCGTCGAGGTTTCCCTGGCCACTGCTGCCTCCACTGGCGTA
JMFN041N12+ ACAACCCCCTCAGCCTTGGCCGTCGAGGTTTCCCTGGCCACTGCTGCCTCCACTGGCGTA
                      ____________________________________________________________
consensus ACAACCCCCTCAGCCTTGGCCGTCGAGGTTTCCCTGGCCACTGCTGCCTCCACTGGCGTA
 
. : . : . : . : . : . :
JMFN010O02+ GGAATTGTCCTCCTGAGGCTGCCACACGGACTGCCATGCCTGCGACGGCGGTGGCGGAGG
JMFN041N12+ GGAATTGTCCTCCTGAGGCTGCCACACGGACTGCCATGCCTGCGACGGCGGTGGCGGAGG
JMFN043P05+ GACGGCGGTGGCGGAGG
                      ____________________________________________________________
consensus GGAATTGTCCTCCTGAGGCTGCCACACGGACTGCCATGCCTGCGACGGCGGTGGCGGAGG
 
. : . : . : . : . : . :
JMFN010O02+ CTGGACGTACATGGACGGATCCACACCAGGCACGGCGGGCCTTCCAATCATGACACCGGG
JMFN041N12+ CTGGACGTACATGGACGGATCCACACCAGGCACGGCGGGCCTTCCAATCATGACACCGGG
JMFN043P05+ CTGGACGTACATGGACGGATCCACACCAGGCACGGCGGGCCTTCCAATCATGACACCGGG
JMFN036K17+ GCCTTCCAATCATGACACCGGG
                      ____________________________________________________________
consensus CTGGACGTACATGGACGGATCCACACCAGGCACGGCGGGCCTTCCAATCATGACACCGGG
 
. : . : . : . : . : . :
JMFN010O02+ GGGCGTGGGCTGGCCCATTGGCGGGTAGTAGTACGGGACGCCGCTAGCGGTGGAGCCGGC
JMFN041N12+ GGGCGTGGGCTGGCCCATTGGCGGGTAGTAGTACGGGACGCCGCTAGCGGTGGAGCCGGC
JMFN043P05+ GGGCGTGGGCTGGCCCATTGGCGGGTAGTAGTACGGGACGCCGCTAGCGGTGGAGCCGGC
JMFS117A05+ GCGTGGGCTGGCCCATTGGCGGGTAGTAGTACGGGACGCCGCTAGCGGTGGAGCCGGC
JMFN036K17+ GGGCGTGGGCTGGCCCATTGGCGGGTAGTAGTACGGGACGCCGCTAGCGGTGGAGCCGGC
                      ____________________________________________________________
consensus GGGCGTGGGCTGGCCCATTGGCGGGTAGTAGTACGGGACGCCGCTAGCGGTGGAGCCGGC
 
. : . : . : . : . : . :
JMFN010O02+ GACCATTCCGGCGGCGGCGGCGGCGGCGGGGCCGACGAGGGCAGCAGTCTCGTCCTTGAT
JMFN041N12+ GACCATTCCGGCGGCGGCGGCGGCGGCGGGGCCGACGAGGGCAGCAGTCTCGTCCTTGAT
JMFN043P05+ GACCATTCCGGCGGCGGCGGCGGCGGCGGGGCCGACGAGGGCAGCAGTCTCGTCCTTGAT
JMFS117A05+ GACCATTCCGNCGNCGGCGGCGGCGGCGGGGCCGACGAGGGCAGCAGTCTCGTCCTTGAT
JMFN036K17+ GACCATTCCGGCGGCGGCGGCGGCGGCGGGGCCGACGAGGGCAGCAGTCTCGTCCTTGAT
                      ____________________________________________________________
consensus GACCATTCCGGCGGCGGCGGCGGCGGCGGGGCCGACGAGGGCAGCAGTCTCGTCCTTGAT
 
. : . : . : . : . : . :
JMFN010O02+ CTCGTCGCGGGGCACAATGTCGACGAGGAAATCGAAGATGTCAGTGCGGGTGATGGCCGC
JMFN041N12+ CTCGTCGCGGGGCACAATGTCGACGAGGAAATCGAAGATGTCAGTGCGGGTGATGGCCGC
JMFN043P05+ CTCGTCGCGGGGCACAATGTCGACGAGGAAATCGAAGATGTCAGTGCGGGTGATGGCCGC
JMFS117A05+ CTCGTCGCGGGGCACAATGTCGACGAGGAAATCGAAGATGTCAGTGCGGGTGATGGCCGC
JMFN036K17+ CTCGTCGCGGGGCACAATGTCGACGAGGAAATCGAAGATGTCAGTGCGGGTGATGGCCGC
                      ____________________________________________________________
consensus CTCGTCGCGGGGCACAATGTCGACGAGGAAATCGAAGATGTCAGTGCGGGTGATGGCCGC
 
. : . : . : . : . : . :
JMFN010O02+ GGCGATGTCGTTCTTCTGTAGGGTGCGGCGCTTGTTCTCCTCGGCGTGGAGCCAGGAGCG
JMFN041N12+ GGCGATGTCGTTCTTCTGTAGGGTGCGGCGCTTGTTCTCCTCGGCGTGGAGCCAGGAGCG
JMFN043P05+ GGCGATGTCGTTCTTCTGTAGGGTGCGGCGCTTGTTCTCCTCGGCGTGGAGCCAGGAGCG
JMFS117A05+ GGCGATGTCGTTCTTCTGTAGGGTGCGGCGCTTGTTCTCCTCGGCGTGGAGCCAGGAGCG
JMFN036K17+ GGCGATGTCGTTCTTCTGTAGGGTGCGGCGCTTGTTCTCCTCGGCGTGGAGCCAGGAGCG
                      ____________________________________________________________
consensus GGCGATGTCGTTCTTCTGTAGGGTGCGGCGCTTGTTCTCCTCGGCGTGGAGCCAGGAGCG
 
. : . : . : . : . : . :
JMFN010O02+ AA
JMFN041N12+ AATGGTGAGCTCCAGAATGAAGAGCTCGCAGGCCTTGGCGAACAGGATGGGCGCCTCCGC
JMFN043P05+ AATGGTGAGCTCCAGAATGAAGAGCTCGCAGGCCTTGGCGAACAGGATGGGCGCCTCCGC
JMFS117A05+ AATGGTGAGCTCCAGAATGAAGAGCTCGCAGGCCTTGGCGAACAGGATGGGCGCCTCCGC
JMFN036K17+ AATGGTGAGCTCCAGAATGAAGAGCTCGCAGGCCTTGGCGAACAGGATGGGCGCCTCCGC
                      ____________________________________________________________
consensus AATGGTGAGCTCCAGAATGAAGAGCTCGCAGGCCTTGGCGAACAGGATGGGCGCCTCCGC
 
. : . : . : . : . : . :
JMFN041N12+ GGAGATCATACGCACGTCCTCGTCCGCCTTCATGATCTTCTTGATGCGGGCCAGAGGGAG
JMFN043P05+ GGAGATCATACGCACGTCCTCGTCCGCCTTCATGATCTTCTTGATGCGGGCCAGAGGGAG
JMFS117A05+ GGAGATCATACGCACGTCCTCGTCCGCCTTCATGATCTTCTTGATGCGGGCCAGAGGGAG
JMFN036K17+ GGAGATCATACGCACGTCCTCGTCCGCCTTCATGATCTTCTTGATGCGGGCCAGAGGGAG
                      ____________________________________________________________
consensus GGAGATCATACGCACGTCCTCGTCCGCCTTCATGATCTTCTTGATGCGGGCCAGAGGGAG
 
. : . : . : . : . : . :
JMFN041N12+ CTGGTGGTTC
JMFN043P05+ CTGGTGGTTCTTGGAGTCGTTCACCTGCTCGATCTCCTGCCGCTGGTACGTCCAGAACAT
JMFS117A05+ CTGGTGGTTCTTGAAGTCGTTCACCTGCTCGATCTCCTGCCGCTGGTACGTCCAGAACAT
JMFN036K17+ CTGGTGGTTCTTGAAGTCGTTCACCTGCTCGATCTCCTGCCGCTGGTACGTCCAGAACAT
                      ____________________________________________________________
consensus CTGGTGGTTCTTGAAGTCGTTCACCTGCTCGATCTCCTGCCGCTGGTACGTCCAGAACAT
 
. : . : . : . : . : . :
JMFN043P05+ TTGCAGCTGCTGCTGCTGTTGCTGGAGGAGATGGTGGTACGGCGGCTGCGCCGGCGGGTA
JMFS117A05+ TTGCAGCTGCTGCTGCTGTTGCTGGAGGAGATGGTGGTACGGCGGCTGCGCCGGCGGGTA
JMFN036K17+ TTGCAGCTGCTGCTGCTGTTGCTGGAGGAGATGGTGGTACGGCGGCTGCGCCGGCGGGTA
                      ____________________________________________________________
consensus TTGCAGCTGCTGCTGCTGTTGCTGGAGGAGATGGTGGTACGGCGGCTGCGCCGGCGGGTA
 
. : . : . : . : . : . :
JMFN043P05+ CCCGCCGGCCGTCTGAGCTGCGGCTGCGGCTGCAGCCGCCGCTGCTTGCTGAGGGCTGTT
JMFS117A05+ CCCGCCGGCCGTCTGAGCTGCGGCTGCGGCTGCAGCCGCCGCTGCTTGCTGAGGGCTGTT
JMFN036K17+ CCCGCCGGCCGTCTGAGCTGCGGCTGCGGCTACAGCCGCCGCTGCTTGCTGAGGGCTGTT
                      ____________________________________________________________
consensus CCCGCCGGCCGTCTGAGCTGCGGCTGCGGCTGCAGCCGCCGCTGCTTGCTGAGGGCTGTT
 
. : . : . : . : . : . :
JMFN043P05+ CTCCA
JMFS117A05+ CTCCATTGTTCTTCACAGAAAGAAATGGAGAGAGAGAGAGAGAAAGAGAAATATGA
JMFN036K17+ CTCCATTGTTCTTCACAGAAAGAAATGGAGAGAGAGAGAGAGAAAGAGAAATATGAGAAA
                      ____________________________________________________________
consensus CTCCATTGTTCTTCACAGAAAGAAATGGAGAGAGAGAGAGAGAAAGAGAAATATGAGAAA