Contig 003342:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042F05-                                                             TTTTTTTTT
                      ____________________________________________________________
consensus                                                                TTTTTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042F05-          TTTTTTAGCTACAATATTAGGTGAATTATGACCAAACTCATTAATTTAAGAGTTACCAAA
                      ____________________________________________________________
consensus             TTTTTTAGCTACAATATTAGGTGAATTATGACCAAACTCATTAATTTAAGAGTTACCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042F05-          CATGTTAAGTTTTTAATTTGTATGTACAAAAATAAGTATTATAAGTCCGTACGAATTTAA
                      ____________________________________________________________
consensus             CATGTTAAGTTTTTAATTTGTATGTACAAAAATAAGTATTATAAGTCCGTACGAATTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042F05-          CTAACTGGTTCAGTAGGTAAATATTTGAGAGAAAATGAAGAGAAAAAACACTACAACTAA
                      ____________________________________________________________
consensus             CTAACTGGTTCAGTAGGTAAATATTTGAGAGAAAATGAAGAGAAAAAACACTACAACTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042F05-          TACTAGGAGTAACTAATCCGTGATAACATCCGGAAAACTGCCCTTGTCCTTGCCCCGACC
                      ____________________________________________________________
consensus             TACTAGGAGTAACTAATCCGTGATAACATCCGGAAAACTGCCCTTGTCCTTGCCCCGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042F05-          CGGAAGTCACATGAGATGAGATGAGAGCGAGCCGTCACATGGCCTTGCCGGAAATCACGG
                      ____________________________________________________________
consensus             CGGAAGTCACATGAGATGAGATGAGAGCGAGCCGTCACATGGCCTTGCCGGAAATCACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042F05-          GTTACAGGCGTGGGTTGTTGGGTCCCACAAGTCAACAGAATTGTCCCGATACAGTTTTTA
                      ____________________________________________________________
consensus             GTTACAGGCGTGGGTTGTTGGGTCCCACAAGTCAACAGAATTGTCCCGATACAGTTTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042F05-          CGGTTACGGCTTTACAGTGGAGGGGATCGGGGCCCAGCTAGCTATACCAGAAAATTAGCG
                      ____________________________________________________________
consensus             CGGTTACGGCTTTACAGTGGAGGGGATCGGGGCCCAGCTAGCTATACCAGAAAATTAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042F05-          CCGCCGCCGCCGCCGCAGCCGCGGNGGAGCTGAGTTTCATCTCCGGCAGCGGGGATTGGC
                      ____________________________________________________________
consensus             CCGCCGCCGCCGCCGCAGCCGCGGNGGAGCTGAGTTTCATCTCCGGCAGCGGGGATTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042F05-          GGGAACTCCCCTCCGCCGCACTTCCTGCAGCGAGCGACGATGAGGATCTGTCGGCACGAC
JMFF042F05+                         GCCGCACTTCCTGCAGCGAGCGACGATGAGGATCTGTCGGCACGAC
JMFN007D11+                         GCCGCACTTCCTGCAGCGAGCGACGATGAGGATCTGTCGGCACGAC
JMFN034J08+            GGAACTCCCCTCCGCCGCACTTCCTGCAGCGAGCGACGATGAGGATCTGTCGGCACGAC
                      ____________________________________________________________
consensus             GGGAACTCCCCTCCGCCGCACTTCCTGCAGCGAGCGACGATGAGGATCTGTCGGCACGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042F05-          GGGCAGGAGGAGTGGGACCCCAGCCACGTGTCGATACACTGCACGTGGAACCCGTGGCCG
JMFF042F05+           GGGCAGGAGGAGTGGGACCCCAGCCACGTGTCGATACACTGCACGTGGAACCCGTGGCCG
JMFN007D11+           GGGCAGGAGGAGTGGGACCCCAGCCACGTGTCGATACACTGCACGTGGAACCCGTGGCCG
JMFN034J08+           GGGCAGGAGGAGTGGGACCCCAGCCACGTGTCGATACACTGCACGTGGAACCCGTGGCCG
                      ____________________________________________________________
consensus             GGGCAGGAGGAGTGGGACCCCAGCCACGTGTCGATACACTGCACGTGGAACCCGTGGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042F05-          CACTGCGGGAGCATTCGGATCT                                      
JMFF042F05+           CACTGCGGGAGCATTCGGATCTCCTCCCCCTCGGCGTACTCCGCCAGGCATATCGCGCAG
JMFN007D11+           CACTGCGGGAGCATTCGGATCTCCTCCCCCTCGGCGTACTCCGCCAGGCATATCGCGCAG
JMFN034J08+           CACTGCGGGAGCATTCGGATCTCCTCCCCCTCGGCGTACTCCGCCAGGCATATCGCGCAG
                      ____________________________________________________________
consensus             CACTGCGGGAGCATTCGGATCTCCTCCCCCTCGGCGTACTCCGCCAGGCATATCGCGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042F05+           TCCGCCGCCAACTGCTTCCCGCCGTTCTCGGCGACGAAAGCGGCGCCGTACACGAACTTC
JMFN007D11+           TCCGCCGCCAACTGCTTCCCGCCGTTCTCGGCGACGAAAGCGGCGCCGTACACGAACTTC
JMFN034J08+           TCCGCCGCCAACTGCTTCCCGCCGTTCTCGGCGACGAAAGCGGCGCCGTACACGAACTTC
                      ____________________________________________________________
consensus             TCCGCCGCCAACTGCTTCCCGCCGTTCTCGGCGACGAAAGCGGCGCCGTACACGAACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042F05+           GGCAGCGATTGGAGCACCTTCTTCTTCAGGCCTTTGTTCGCCGCCGGGTGCCCTCTCGCC
JMFN007D11+           GGCAGCGATTGGAGCACCTTCTTCTTCAGGCCTTTGTTCGCCGCCGGGTGCCCTCTCGCC
JMFN034J08+           GGCAGCGATTGGAGCACCTTCTTCTTCAGGCCTTTGTTCGCCGCCGGGTGCCCTCTCGCC
                      ____________________________________________________________
consensus             GGCAGCGATTGGAGCACCTTCTTCTTCAGGCCTTTGTTCGCCGCCGGGTGCCCTCTCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042F05+           CGCACGTTCTCCCCGCCGCCGCCTCTCCTCAGCCACGCACACCGAGCAACCGCAATAAGC
JMFN007D11+           CGCACGTTCTCCCCGCCGCCGCCTCTCCTCAGCCACGCACACCGAGCAACCGCAATAAGC
JMFN034J08+           CGCACGTTCTCCCCGCCGCCGCCTCTCCTCAGCCACGCACACCGAGCAACCGCAATAAGC
                      ____________________________________________________________
consensus             CGCACGTTCTCCCCGCCGCCGCCTCTCCTCAGCCACGCACACCGAGCAACCGCAATAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042F05+           CCTACCACACAAATCAACGCGCACAGCAGCGCCGCCAGTATAACCACGAAATCAGATTCC
JMFN007D11+           CCTACCACACAAATCAACGCGCACAGCAGCGCCGCCAGTATAACCACGAAATCAGATTCC
JMFN034J08+           CCTACCACACAAATCAACGCGCACAGAAGCGCCGCCAGTATAACCACGAAATCAGATTCC
                      ____________________________________________________________
consensus             CCTACCACACAAATCAACGCGCACAGCAGCGCCGCCAGTATAACCACGAAATCAGATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042F05+           ACAGTCACCTCAGACGGCGGATCCGCCACAGACGGCGGACCTGTCGACGAATTATTGCTT
JMFN007D11+           ACAGTCACCTCAGACGGCGGATCCGCCACAGACGGCGGACCTGTCGACGAATTATTGCTT
JMFN034J08+           ACAGTCACCTCAGACGGCGGATCCGCCACAGACGGCGGACCTGTCGACGAATTATTGCTT
                      ____________________________________________________________
consensus             ACAGTCACCTCAGACGGCGGATCCGCCACAGACGGCGGACCTGTCGACGAATTATTGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042F05+           GATAGAAATCTCCGTGCAATCGCCATATATCATATCAACTGTTAATCTTTACTTCACTTT
JMFN007D11+           GATAGAAATCTCCGTGCAATCGCCATATATCATATCAACTGTTAATCTTTACTTCACTTT
JMFN034J08+           GATAGAAATCTCCGTGCAATCGCCATATATCATATCAACTGTTAATCTTTACTTCACTTT
                      ____________________________________________________________
consensus             GATAGAAATCTCCGTGCAATCGCCATATATCATATCAACTGTTAATCTTTACTTCACTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042F05+           CTCAGTTTCTTCTCCAAGAGA                                       
JMFN007D11+           CTCAGT                                                      
JMFN034J08+           CTCAGTTTCTTCTCCAAGAGAGAGAGAGATATATATATACATATATATACATATATATTA
                      ____________________________________________________________
consensus             CTCAGTTTCTTCTCCAAGAGAGAGAGAGATATATATATACATATATATACATATATATTA