| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF035H14 | Sequence | 492 | 003339 (9) | emb|CDP04003.1| | 9e-48 | unnamed protein product [Coffea canephora] | 737 | 003339 (9) | emb|CDP04003.1| | 4e-61 | unnamed protein product [Coffea canephora] |
| JMFF036G01 | Sequence | 477 | 003339 (9) | emb|CDP04003.1| | 4e-45 | unnamed protein product [Coffea canephora] | 599 | 003339 (9) | emb|CDP04003.1| | 5e-54 | unnamed protein product [Coffea canephora] |
| JMFN030E24 | Sequence | 554 | 003339 (9) | emb|CDP04003.1| | 1e-28 | unnamed protein product [Coffea canephora] | |||||
| JMFN033F09 | Sequence | 609 | 003339 (9) | emb|CDP04003.1| | 9e-31 | unnamed protein product [Coffea canephora] | |||||
| JMFN034E01 | Sequence | 600 | 003339 (9) | emb|CDP04003.1| | 2e-26 | unnamed protein product [Coffea canephora] | |||||
| JMSF024P04 | Sequence | 647 | 003339 (9) | emb|CDP04003.1| | 4e-62 | unnamed protein product [Coffea canephora] | 734 | 003339 (9) | emb|CDP04003.1| | 8e-62 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFF036G01- CTTTTTTCTCCCAGT
JMFF035H14- CTTTTTTCTCCCAGT
JMSF024P04- AGT
____________________________________________________________
consensus CTTTTTTCTCCCAGT
. : . : . : . : . : . :
JMFF036G01- CTCTCAATCCGACTCGGAGCGCATCGGCGGGAAGCGGAAGCTGCCTGATCTACAGCTACA
JMFF035H14- CTCTCAATCCGACTCGGAGCGCATCGGCGGGAAGCGGAAGCTGCCTGATCTACAGCTACA
JMSF024P04- CTCTCAATCCGACTCGGAGCGCATCGGCGGGAAGCGGAAGCTGCCTGATCTACAGCTACA
rJMSF024P04+ ACA
rJMFF035H14+ GCTACA
____________________________________________________________
consensus CTCTCAATCCGACTCGGAGCGCATCGGCGGGAAGCGGAAGCTGCCTGATCTACAGCTACA
. : . : . : . : . : . :
JMFF036G01- GCGGCGACGGAGGTGGCGGTGGCCGGTGGACTTTTTGGAAGAGAAGTAAAGATGCTCGAA
JMFF035H14- GCGGCGACGGAGGTGGCGGTGGCCGGTGGACTTTTTGGAAGAGAAGTAAAGATGCTCGAA
JMSF024P04- GCGGCGACGGAGGTGGCGGTGGCCGGTGGACTTTTTGGAAGAGAAGTAAAGATGCTCGAA
rJMSF024P04+ GCGGCGACGGAGGTGGCGGTGGCCGGTGGACTTTTTGGAAGAGAAGTAAAGATGCTCGAA
rJMFF035H14+ GCGGCGACGGAGGTGGCGGTGGCCGGTGGACTTTTNGGAAGAGAAGTAAAGATGCTCGAA
____________________________________________________________
consensus GCGGCGACGGAGGTGGCGGTGGCCGGTGGACTTTTTGGAAGAGAAGTAAAGATGCTCGAA
. : . : . : . : . : . :
JMFF036G01- ACTCCTACCACCGATTCAACAGCCACCGCCAACATTGCTACTGTGAAGCGCTACGCACCT
JMFF035H14- ACTCCTACCACCGATTCAACAGCCACCGCCAACATTGCTACTGTGAAGCGCTACGCACCT
JMSF024P04- ACTCCTACCACCGATTCAACAGCCACCGCCAACATTGCTACTGTGAAGCGCTACGCACCT
rJMSF024P04+ ACTCCTACCACCGATTCAACAGCCACCGCCAACATTGCTACTGTGAAGCGCTACGCACCT
rJMFF036G01+ CCAACATTGCTACTGTGAAGCGATACGCACNT
rJMFF035H14+ ACTCCTACCACCGATTCAACAGCCACCGCCAACATTGCTACTGTGAAGCGCTACGCACCT
____________________________________________________________
consensus ACTCCTACCACCGATTCAACAGCCACCGCCAACATTGCTACTGTGAAGCGCTACGCACCT
. : . : . : . : . : . :
JMFF036G01- CCCAACCAAAGGAATCGCTCCCTTGGAAGGCGCAAATCTGGAGTAGATCGACTTGAAAGA
JMFF035H14- CCCAACCAAAGGAATCGCTCCCTTGGAAGGCGCAAATCTGGAGTAGATCGACTTGAAAGA
JMSF024P04- CCCAACCAAAGGAATCGCTCCCTTGGAAGGCGCAAATCTGGAGTAGATCGACTTGAAAGA
rJMSF024P04+ CCCAACCAAAGGAATCGCTCCCTTGGAAGGCGCAAATCTGGAGTAGATCGACTTGAAAGA
rJMFF036G01+ CCCAACCAAAGGAATCGCTCCCTTGGAAGGCGCAAATCTGGAGTAGATCGACTTGAAAGA
rJMFF035H14+ CCCAACCAAAGGAATCGCTCCCTTGGAAGGCGCAAATCTGGAGTAGATCGACTTGAAAGA
____________________________________________________________
consensus CCCAACCAAAGGAATCGCTCCCTTGGAAGGCGCAAATCTGGAGTAGATCGACTTGAAAGA
. : . : . : . : . : . :
JMFF036G01- GCAAATAGTTATGCTAGTGATGGAGAGAAAAACCAAAATAACATACCCAGAAATATCACC
JMFF035H14- GCAAATAGTTATGCTAGTGATGGAGAGAAAAACCAAAATAACATACCCAGAAATATCACC
JMSF024P04- GCAAATAGTTATGCTAGTGATGGAGAGAAAAACCAAAATAACATACCCAGAAATATCACC
rJMSF024P04+ GCAAATAGTTATGCTAGTGATGGAGAGAAAAACCAAAATAACATACCCAGAAATATCACC
rJMFF036G01+ GCAAATAGTTATGCTAGTGATGGAGAGAAAAACCAAAATAACATACCCAGAAATATCACC
rJMFF035H14+ GCAAATAGTTATGCTAGTGATGGAGAGAAAAACCAAAATAACATACCCAGAAATATCACC
JMFN030E24+ AAACCAAAATAACATACCCAGAAATATCACC
JMFN033F09+ GAGAAAAACCAAAATAACATACCCAGAAATATCACC
____________________________________________________________
consensus GCAAATAGTTATGCTAGTGATGGAGAGAAAAACCAAAATAACATACCCAGAAATATCACC
. : . : . : . : . : . :
JMFF036G01- AGTTTAGATCATGGGGATGCTGGTGGTAGCAATCGCATTTATGAGAATCGTCGCCCAGGT
JMFF035H14- AGTTTAGATCATGGGGATGCTGGTGGTAGCAATCGCATTTATGAGAATCGTCGCCCAGGT
JMSF024P04- AGTTTAGATCATGGGGATGCTGGTGGTAGCAATCGCATTTATGAGAATCGTCGCCCAGGT
rJMSF024P04+ AGTTTAGATCATGGGGATGCTGGTGGTAGCAATCGCATTTATGAGAATCGTCGCCCAGGT
rJMFF036G01+ AGTTTAGATCATGGGGATGCTGGTGGTAGCAATCGCATTTATGAGAATCGTCGCCCAGGT
rJMFF035H14+ AGTTTAGATCATGGGGATGCTGGTGGTAGCAATCGCATTTATGAGAATCGTCGCCCAGGT
JMFN030E24+ AGTTTAGATCATGGGGATGCTGGTGGTAGCAATCGCATTTATGAGAATCGTCGCCCAGGT
JMFN033F09+ AGTTTAGATCATGGGGATGCTGGTGGTAGCAATCGCATTTATGAGAATCGTCGCCCAGGT
JMFN034E01+ AGTTTAGATCATGGGGATGCTGGTGGTAGCAATCGCATTTATGAGAATCGTCGCCCAGGT
____________________________________________________________
consensus AGTTTAGATCATGGGGATGCTGGTGGTAGCAATCGCATTTATGAGAATCGTCGCCCAGGT
. : . : . : . : . : . :
JMFF036G01- GGATCTGCCATTAACGTAATACCATTAAATGGGTGTTGCAACAGTGATGTTTTTCAGTTA
JMFF035H14- GGATCTGCCATTAACGTAATACCATTAAATGGGTGTTGCAACAGTGATGTTTTTCAGTTA
JMSF024P04- GGATCTGCCATTAACGTAATACCATTAAATGGGTGTTGCAACAGTGATGTTTTTCAGTTA
rJMSF024P04+ GGATCTGCCATTAACGTAATACCATTAAATGGGTGTTGCAACAGTGATGTTTTTCAGTTA
rJMFF036G01+ GGATCTGCCATTAACGTAATACCATTAAATGGGTGTTGCAACAGTGATGTTTTTCAGTTA
rJMFF035H14+ GGATCTGCCATTAACGTAATACCATTAAATGGGTGTTGCAACAGTGATGTTTTTCAGTTA
JMFN030E24+ GGATCTGCCATTAACGGTATACCATTAAATGGGTGTTGCAACAGTGATGTTTTTCAGTTA
JMFN033F09+ GGATCTGCCATTAACGTAATACCATTAAATGGGTGTTGCAACAGTGATGTTTTTCAGTTA
JMFN034E01+ GGATCTGCCATTAACGTAATACCATTAAATGGGTGTTGCAACAGTGATGTTTTTCAGTTA
____________________________________________________________
consensus GGATCTGCCATTAACGTAATACCATTAAATGGGTGTTGCAACAGTGATGTTTTTCAGTTA
. : . : . : . : . : . :
JMFF036G01- TTGAATGAACGCTGGACNACTACCATGAATTTGTATAATAGT
JMFF035H14- TTGAATGAACGCTGGACAACTACCATGAATTTGTATAATAGTTTACCTGAAGGTTCA
JMSF024P04- TTGAATGAACGCTGGACAACTACCATGAATTTGTATAATAGTTTACCTGAAGGTTCACCT
rJMSF024P04+ TTGAATGAACGCTGGACAACTACCATGAATTTGTATAATAGTTTACCTGAAGGTTCACCT
rJMFF036G01+ TTGAATGAACGCTGGACAACTACCATGAATTTGTATAATAGTTTACCTGAAGGTTCACCT
rJMFF035H14+ TTGAATGAACGCTGGACAACTACCATGAATTTGTATAATAGTTTACCTGAAGGTTCACCT
JMFN030E24+ TTGAATGAACGCTGGACAACTACCATGAATTTGTATAATAGTTTACCTGAAGGTTCACCT
JMFN033F09+ TTGAATGAACGCTGGACAACTACCATGAATTTGTATAATAGTTTACCTGAAGGTTCACCT
JMFN034E01+ TTGAATGAACGCTGGACAACTACCATGAATTTGTATAATAGTTTACCTGAAGGTTCACCT
____________________________________________________________
consensus TTGAATGAACGCTGGACAACTACCATGAATTTGTATAATAGTTTACCTGAAGGTTCACCT
. : . : . : . : . : . :
JMSF024P04- GAAAGGCCAGTTATGTACACCAGAAATGTGTCAAATGCGTCACCTTGGAGGCTTCCCCAT
rJMSF024P04+ GAAAGGCCAGTTATGTACACCAGAAATGTGTCAAATGCGTCACCTTGGAGGCTTCCCCAT
rJMFF036G01+ GAAAGGCCAGTTATGTACACCAGAAATGTGTCAAATGCGTCACCTTGGAGGCTTCCCCAT
rJMFF035H14+ GAAAGGCCAGTTATGTACACCAGAAATGTGTCAAATGCGTCACCTTGGAGGCTTCCCCAT
JMFN030E24+ GAAAGGCCAGTTATGTACACCAGAAATGTGTCAAATGCGTCACCTTGGAGGCTTCCCCAT
JMFN033F09+ GAAAGGCCAGTTATGTACACCAGAAATGTGTCAAATGCGTCACCTTGGAGGCTTCCCCAT
JMFN034E01+ GAAAGGCCAGTTATGTACACCAGAAATGTGTCAAATGCGTCACCTTGGAGGCTTCCCCAT
____________________________________________________________
consensus GAAAGGCCAGTTATGTACACCAGAAATGTGTCAAATGCGTCACCTTGGAGGCTTCCCCAT
. : . : . : . : . : . :
JMSF024P04- CAGATGTCACAAACAGCTAGTGCTGGGCCTTCTGTCGGGTTGCAAAGAGATTTCTTGAGT
rJMSF024P04+ CAGATGTCACAAACAGCTAGTGCTGGGCCTTCTGTCGGGTTGCAAAGAGATTTCTTGAGT
rJMFF036G01+ CAGATGTCACAAACATCTAGTGCTGGGCCTTCTGTCGGGTTGCAAAGAGATTTCTTGAGT
rJMFF035H14+ CAGATGTCACAAACATCTAGTGCTGGGCCTTCTGTCGGGTTGCAAAGAGATTTCTTGAGT
JMFN030E24+ CAGATGTCACAAACAGCTAGTGCTGGGCCTTCTGTCGGGTTGCAAAGAGATTTCTTGAGT
JMFN033F09+ CAGATGTCACAAACAGCTAGTGCTGGGCCTTCTGTCGGGTTGCAAAGAGATTTCTTGAGT
JMFN034E01+ CAGATGTCACAAACAGCTAGTGCTGGGCCTTCTGTCGGGTTGCAAAGAGATTTCTTGAGT
____________________________________________________________
consensus CAGATGTCACAAACAGCTAGTGCTGGGCCTTCTGTCGGGTTGCAAAGAGATTTCTTGAGT
. : . : . : . : . : . :
JMSF024P04- GAACTTTGGCAGGCTATGCACAACTCAAATCCCAGTTCGAAGT
rJMSF024P04+ GAACTTTGGCAGGCTATGCACAACTCAAATCCCAGTTCGAAGTAACAAATAAGTGCTTGA
rJMFF036G01+ GAACTTTGGCAGGCTATGCACAACTCAAATCCCAGTTCGAAGTAACAAATAAGTGCTTGA
rJMFF035H14+ GAACTTTGGCAGGCTATGCACAACTCAAATCCCAGTTCGAAGTAACAAATAAGTGCTTGA
JMFN030E24+ GAACTTTGGCAGGCTATGCACAACTCAAATCCCAGTTCGAAGTAACAAATAAGTGCTTGA
JMFN033F09+ GAACTTTGGCAGGCTATGCACAACTCAAATCCCAGTTCGAAGTAACAAATAAGTGCTTGA
JMFN034E01+ GAACTTTGGCAGGCTATGCACAACTCAAATCCCAGTTCGAAGTAACAAATAAGTGCTTGA
____________________________________________________________
consensus GAACTTTGGCAGGCTATGCACAACTCAAATCCCAGTTCGAAGTAACAAATAAGTGCTTGA
. : . : . : . : . : . :
rJMSF024P04+ AACTCGAGTTTGACAGCTCAAGAATCCTTCATAATGTGCAATTAGATATTTGTTGTAATG
rJMFF036G01+ AACTCGAGTTTGACAGCTCAAGAATCCTTCATAATGTGCAATTAGATATTTGTTGTAATG
rJMFF035H14+ AACTCGAGTTTGACAGCTCAAGAATCCTTCATAATGTGCAATTAGATATTTGTTGTAATG
JMFN030E24+ AACTCGAGTTTGACAGCTCAAGAATCCTTCATAATGTGCAATTAGATATTTGTTGTAATG
JMFN033F09+ AACTCGAGTTTGACAGCTCAAGAATCCTTCATAATGTGCAATTAGATATTTGTTGTAATG
JMFN034E01+ AACTCGAGTTTGACAGCTCAAGAATCCTTCATAATGTGCAATTAGATATTTGTTGTAATG
____________________________________________________________
consensus AACTCGAGTTTGACAGCTCAAGAATCCTTCATAATGTGCAATTAGATATTTGTTGTAATG
. : . : . : . : . : . :
rJMSF024P04+ TACTCAAAGCTTGACACCTGTGATACTTAAATATGTGGGAGAAAAACAAAGCTTGTT
rJMFF036G01+ TACTCAAAGCTTGACACCTGTGATACT
rJMFF035H14+ TACTCAAAGCTTGACACCTGTGATACTTAAATATGTGGGAGAAAAACAAAGCTTGTT
JMFN030E24+ TACTCAAAGCTTGACACCTGTGATACTTAAATATGTGGGAGAAAAACAAAGCTTGTTTGG
JMFN033F09+ TACTCAAAGCTTGACACCTGTGATACTTAAATATGTGGGAGAAAAACAAAGCTTGTTTGG
JMFN034E01+ TACTCAAAGCTTGACACCTGTGATACTTAAATATGTGGGAGAAAAACAAAGCTTGTTTGG
____________________________________________________________
consensus TACTCAAAGCTTGACACCTGTGATACTTAAATATGTGGGAGAAAAACAAAGCTTGTTTGG
. : . : . : . : . : . :
JMFN030E24+ AAGTT
JMFN033F09+ AAGTTATCCACAATGTTTCCTGCTGCTATTTTCTCCTTGGTTTAAAACTTTAAATTCAT
JMFN034E01+ AAGTTATCCACAATGTTTCCTGCTGCTATTTTCTCCTTGGTTTAAAACTTTAAATTCATA
____________________________________________________________
consensus AAGTTATCCACAATGTTTCCTGCTGCTATTTTCTCCTTGGTTTAAAACTTTAAATTCATA
. : . : . : . : . : . :
JMFN034E01+ ACTTGGTCTTAGTTACGCTGTTAGTGXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTC
____________________________________________________________
consensus ACTTGGTCTTAGTTACGCTGTTAGTGNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTC