Contig 003336:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN029I23Sequence620003336 (5)ref|XP_002517154.1|2e-57conserved hypothetical protein [Ricinus communis] gb|EEF45317.1| conserved hypot
JMFS074H09Sequence637003336 (5)ref|XP_002517154.1|3e-62conserved hypothetical protein [Ricinus communis] gb|EEF45317.1| conserved hypot
JMFS088E01Sequence633003336 (5)ref|XP_002517154.1|2e-60conserved hypothetical protein [Ricinus communis] gb|EEF45317.1| conserved hypot
JMFS088H02Sequence537003336 (5)ref|XP_002517154.1|2e-38conserved hypothetical protein [Ricinus communis] gb|EEF45317.1| conserved hypot
JMFS093D06Sequence627003336 (5)ref|XP_002517154.1|6e-53conserved hypothetical protein [Ricinus communis] gb|EEF45317.1| conserved hypot

Alignment

This contig is upended


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JMFS093D06+                                  TCCCAGCAAAAACATCACTTCTCCAAAAATATTACTT
                      ____________________________________________________________
consensus                                    TCCCAGCAAAAACATCACTTCTCCAAAAATATTACTT
 
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JMFS093D06+           AAACAAGGTTCTATATAGCATCTGTACCTCTATTTATTCTAGTATTTCAAGATGAATAGT
                      ____________________________________________________________
consensus             AAACAAGGTTCTATATAGCATCTGTACCTCTATTTATTCTAGTATTTCAAGATGAATAGT
 
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JMFS093D06+           TACCGTTCTTCCAAGAAGGAAAGCTGCAGCAGCACCAATTGTAGCACCAATAGAATCAGC
JMFS088E01+              CGTTCTTCCAAGAAGGAAAGCTGCAGCAGCACCAATTGTAGCACCAATAGAATCAGC
JMFS074H09+              CGTTCTTCCAAGAAGGAAAGCTGCAGCAGCACCAATTGTAGCACCAATAGAATCAGC
JMFN029I23+              CGTTCTTCCAAGAAGGAAAGCTGCAGCAGCACCAATTGTAGCACCAATAGAATCAGC
                      ____________________________________________________________
consensus             TACCGTTCTTCCAAGAAGGAAAGCTGCAGCAGCACCAATTGTAGCACCAATAGAATCAGC
 
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JMFS093D06+           AACAAAACCCACAGGCAACCCAAACAGATAACCACCACCTAAAGTAAGTACTGAAGCAGG
JMFS088E01+           AACAAAACCCACAGGCAACCCAAACAGATAACCACCACCTAAAGTAAGTACTGAAGCAGG
JMFS074H09+           AACAAAACCCACAGGCAACCCAAACAGATAACCACCACCTAAAGTAAGTACTGAAGCAGG
JMFS088H02+             CAAAACCCACAGGCAACCCAAACAGATAACCACCACCTAAAGTAAGTACTGAAGCAGG
JMFN029I23+           AACAAAACCCACAGGCAACCCAAACAGATAACCACCACCTAAAGTAAGTACTGAAGCAGG
                      ____________________________________________________________
consensus             AACAAAACCCACAGGCAACCCAAACAGATAACCACCACCTAAAGTAAGTACTGAAGCAGG
 
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JMFS093D06+           AACTGCTAACACTGTTAGAGGAATGTATGCAACAGCCAGGACAAGAGGACCCCAAGGACC
JMFS088E01+           AACTGCTAACACTGTTAGAGGAATGTATGCAACAGCCAGGACAAGAGGACCCCAAGGACC
JMFS074H09+           AACTGCTAACACTGTTAGAGGAATGTATGCAACAGCCAGGACAAGAGGACCCCAAGGACC
JMFS088H02+           AGCTGCTAACACTGTTAGAGGAATGTATGCAACAGCCAGGGCAAGAGGACCCCAAGGACC
JMFN029I23+           AACTGCTAACACTGTTAGAGGAATGTATGCAACAGCCAGGACAAGAGGACCCCAAGGACC
                      ____________________________________________________________
consensus             AACTGCTAACACTGTTAGAGGAATGTATGCAACAGCCAGGACAAGAGGACCCCAAGGACC
 
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JMFS093D06+           AAGATCATCTTTTACCCATATCAGGAAATCTTTTAAAATCTTTTCAACAGGAAGAGTGAA
JMFS088E01+           AAGATCATCTTTTACCCATATCAGGAAATCTTTTAAAATCTTTTCAACAGGAAGAGTGAA
JMFS074H09+           AAGATCATCTTTTACCCATATCAGGAAATCTTTTAAAATCTTTTCAACAGGAAGAGTGAA
JMFS088H02+           AAGATCATCTTTTACCCATATCAGGAAATCTTTTAAAATCTTTTCAACAGGAAGAGTGAA
JMFN029I23+           AAGATCATCTTTTACCCATATCAGGAAATCTTTTAAAATCTTTTCAACAGGAAGAGTGAA
                      ____________________________________________________________
consensus             AAGATCATCTTTTACCCATATCAGGAAATCTTTTAAAATCTTTTCAACAGGAAGAGTGAA
 
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JMFS093D06+           GCAAGCTGTGGCAATGGCGGCAATAAGCAAAAGAAGAAGGATAATTTTTAAAAGGGAGAC
JMFS088E01+           GCAAGCTGTGGCAATGGCGGCAATAAGCAAAAGAAGAAGGATAATTTTTAAAAGGGAGAC
JMFS074H09+           GCAAGCTGTGGCAATGGCGGCAATAAGCAAAAGAAGAAGGATAATTTTTAAAAGGGAGAC
JMFS088H02+           GCAAGCTGTGGCAATGGCGGCAATAAGCAAAAGAAGAAGGATAATTTTTAAAAGGGAGAC
JMFN029I23+           GCAAGCTGTGGCAATGGCGGCAATAAGCAAAAGAAGAAGGATAATTTTTAAAAGGGAGAC
                      ____________________________________________________________
consensus             GCAAGCTGTGGCAATGGCGGCAATAAGCAAAAGAAGAAGGATAATTTTTAAAAGGGAGAC
 
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JMFS093D06+           CCTATTGAAAGCCATCGAGAGCCTCTTACGCCAAGGCCTACACTCTTCTTCGTCCTCCTG
JMFS088E01+           CCTATTGAAAGCCATCGAGAGCCTCTTACGCCAAGGCCTACACTCTTCTTCGTCCTCCTG
JMFS074H09+           CCTATTGAAAGCCATCGAGAGCCTCTTACGCCAAGGCCTACACTCTTCTTCGTCCTCCTG
JMFS088H02+           CCTATTGAAAGCCATCGAGAGCCTCTTACGCCAAGGCCTACACTCTTCTTCGTCCTCCTG
JMFN029I23+           CCTATTGAAAGCCATCGAGAGCCTCTTACGCCAAGGCCTACACTCTTCTTCGTCCTCCTG
                      ____________________________________________________________
consensus             CCTATTGAAAGCCATCGAGAGCCTCTTACGCCAAGGCCTACACTCTTCTTCGTCCTCCTG
 
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JMFS093D06+           GGCCTCTCTAACAGCTTGCCTAAAACACAATCGCGGCCGCAAATTCACTCCTTCCCCTAA
JMFS088E01+           GGCCTCTCTAACAGCTTGCCTAAAACACAATCGCGGCCGCAAATTCACTCCTTCCCCTAA
JMFS074H09+           GGCCTCTCTAACAGCTTGCCTAAAACACAATCGCGGCCGCAAATTCACTCCTTCCCCTAA
JMFS088H02+           GGCCTCTCTAACAGCTTGCCTAAAACACAATCGCGGCCGCAAATTCACTCCTTCCCCTAA
JMFN029I23+           GGCCTCTCTAACAGCTTGCCTAAAACACAATCGCGGCCGCAAATTCACTCCTTCCCCTAA
                      ____________________________________________________________
consensus             GGCCTCTCTAACAGCTTGCCTAAAACACAATCGCGGCCGCAAATTCACTCCTTCCCCTAA
 
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JMFS093D06+           ATTTGCCAGATTTTCAATCTGGGGAAGTGCAGAATGAAAACTAAAACAAAGATAGAACAA
JMFS088E01+           ATTTGCCAGATTTTCAATCTGGGGAAGTGCAGAATGAAAACTAAAACAAAGATAGAACAA
JMFS074H09+           ATTTGCCAGATTTTCAATCTGGGGAAGTGCAGAATGAAAACTAAAACAAAGATAGAACAA
JMFS088H02+           ATTTGCCAGATTTTCAATCTGGGGAAGTGCAGAATGAAAACTAAAACAAAGATAGAACAA
JMFN029I23+           ATTTGCCAGATTTTCAATCTGGGGAAGTGCAGAATGAAAACTAAAACAAAGATAGAACAA
                      ____________________________________________________________
consensus             ATTTGCCAGATTTTCAATCTGGGGAAGTGCAGAATGAAAACTAAAACAAAGATAGAACAA
 
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JMFS093D06+           AATCCGAAGAATAAAATGGGAAGAAATGTTATAAATCGAAATCCATTTAG          
JMFS088E01+           AATCCGAAGAATAAAATGGGAAGAAATGTTATAAATCGAAATCCATTTAGCGACAAAAAG
JMFS074H09+           AATCCGAAGAATAAAATGGGAAGAAATGTTATAAATCGAAATCCATTTAGCGACAAAAAG
JMFS088H02+           AATCCGAAGAATAAAATGGGAAGAAATGTTATAAATCGAAATCCATTTAGCGACAAAAAG
JMFN029I23+           AATCCGAAGAATAAAATGGGAAGAAATGTTATAAATCGAAATCCATTTAGCGACAAAAAG
                      ____________________________________________________________
consensus             AATCCGAAGAATAAAATGGGAAGAAATGTTATAAATCGAAATCCATTTAGCGACAAAAAG
 
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JMFS088E01+           AAAAAGGCGAAGCTATATGAAATGAGCACACGCAAGAGCCGCAGTAGAGATGATCCTTC 
JMFS074H09+           AAAAAGGCGAAGCTATATGAAATGAGCACACGCAAGAGCCGCAGTAGAGATGATCCTTC 
JMFS088H02+           AAAAAGGCGAAGCTATATGAAATGAGCACACGCAAGAGCCGCAGTAGAGATGATCCTTC 
JMFN029I23+           AAAAAGGCGAAGCTATATGAAATGAGCACACGCAAGAGCCGCAGTAGAGATGATCCTTCT
                      ____________________________________________________________
consensus             AAAAAGGCGAAGCTATATGAAATGAGCACACGCAAGAGCCGCAGTAGAGATGATCCTTCT