| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN006D24 | Sequence | 641 | 003327 (6) | ref|XP_009764546.1| | 3e-74 | PREDICTED: protein DOWNSTREAM OF FLC-like [Nicotiana sylvestris] | |||||
| JMFN010C16 | Sequence | 626 | 003327 (6) | ref|XP_009764546.1| | 4e-74 | PREDICTED: protein DOWNSTREAM OF FLC-like [Nicotiana sylvestris] | |||||
| JMFN015D07 | Sequence | 608 | 003327 (6) | ref|XP_009764546.1| | 3e-74 | PREDICTED: protein DOWNSTREAM OF FLC-like [Nicotiana sylvestris] | |||||
| JMFN018N23 | Sequence | 562 | 003327 (6) | ref|XP_009622218.1| | 4e-59 | PREDICTED: pollen-specific protein C13-like [Nicotiana tomentosiformis] | |||||
| JMFN037D19 | Sequence | 496 | 003327 (6) | ref|XP_009764546.1| | 6e-49 | PREDICTED: protein DOWNSTREAM OF FLC-like [Nicotiana sylvestris] | |||||
| JMFN044N06 | Sequence | 421 | 003327 (6) | ref|XP_009794836.1| | 5e-27 | PREDICTED: pollen-specific protein C13-like, partial [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
JMFN044N06+ AAAATAAAGTTTAAACTAACATCA
____________________________________________________________
consensus AAAATAAAGTTTAAACTAACATCA
. : . : . : . : . : . :
JMFN044N06+ ATTTAACGAACTATTAAATTGAGTTTCACAAATAGGGAAATGATACCAACATCCACAACT
JMFN018N23+ AACGAACTATTAAATTGAGTTTCACAAATAGGGAAATGATACCAACATCCACAACT
JMFN006D24+ GGGAAATGATACCAACATCCNCAACT
____________________________________________________________
consensus ATTTAACGAACTATTAAATTGAGTTTCACAAATAGGGAAATGATACCAACATCCACAACT
. : . : . : . : . : . :
JMFN044N06+ AATAACATAGATATAAGGATGCTTTTAAGCCTCACTCAAACAAAATAAAACAAAGCAAGC
JMFN018N23+ AATAACATAGATATAAGGATGCTTTTAAGCCTCACTCAAACAAAATAAAACAAAGCAAGC
JMFN006D24+ AATAACATAGATATAAGGATGCTTTTAAGCCTCACTCAAACAAAATAAAACAAAGCAAGC
JMFN010C16+ AGCCTCACTCAAACAAAATAAAACAAAGCAAGC
JMFN015D07+ AAAGCAAGC
____________________________________________________________
consensus AATAACATAGATATAAGGATGCTTTTAAGCCTCACTCAAACAAAATAAAACAAAGCAAGC
. : . : . : . : . : . :
JMFN044N06+ TGCAGAGTACTAGGATCACAACAAAGTTAGCGAACCAATTCAATTCCCTCCTTAAAAATT
JMFN018N23+ TGCAGAGTACTAGGATCACAACAAAGTTAGCGAACCAATTCAATTCCCTCCTTAAAAATT
JMFN006D24+ TGCAGAGTACTAGGATCACAACAAAGTTAGCGAACCAATTCAATTCCCTCCTTAAAAATT
JMFN010C16+ TGCAGAGTACTAGGATCACAACAAAGTTAGCGAACCAATTCAATTCCCTCCTTAAAAATT
JMFN015D07+ TGCAGAGTACTAGGATCACAACAAAGTTAGCGAACCAATTCAATTCCCTCCTTAAAAATT
____________________________________________________________
consensus TGCAGAGTACTAGGATCACAACAAAGTTAGCGAACCAATTCAATTCCCTCCTTAAAAATT
. : . : . : . : . : . :
JMFN044N06+ GTCGTCGTTCAAGTGATACTGAGCGAGGATTTGGGGGCAACTAGCCAGAGGCTCCGTGGT
JMFN018N23+ GTCGTCGTTCAAGTGATACTGAGCGAGGATTTGGGGGCAACTAGCCAGAGGCTCCGTGGT
JMFN006D24+ GTCGTCGTTCAAGTGATACTGAGCGAGGATTTGGGGGCAACTAGCCAGAGGCTCCGTGGT
JMFN010C16+ GTCGTCGTTCAAGTGATACTGAGCGAGGATTTGGGGGCAACTAGCCAGAGGCTCCGTGGT
JMFN037D19+ CCGTGGT
JMFN015D07+ GTCGTCGTTCAAGTGATACTGAGCGAGGATTTGGGGGCAACTAGCCAGAGGCTCCGTGGT
____________________________________________________________
consensus GTCGTCGTTCAAGTGATACTGAGCGAGGATTTGGGGGCAACTAGCCAGAGGCTCCGTGGT
. : . : . : . : . : . :
JMFN044N06+ GGTGAAGCCCATGTTGTTGGCGTAGCGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
JMFN018N23+ GGTGAAGCCCATGTTGTTGGCGTAGCGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
JMFN006D24+ GGTGAAGCCCATGTTGTTGGCGTAGCGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
JMFN010C16+ GGTGAAGCCCATGTTGTTGGCGTAGCGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
JMFN037D19+ GGTGAAGCCCATGTTGTTGGCGTAGGGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
JMFN015D07+ GGTGAAGCCCATGTTGTTGGCGTAGCGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
____________________________________________________________
consensus GGTGAAGCCCATGTTGTTGGCGTAGCGAATGTCGCTGACCATACCGTTGTTACGGGTGAG
. : . : . : . : . : . :
JMFN044N06+ GATGACACGGGCCCTGTCAC-GGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
JMFN018N23+ GATGACACGGGCCCTGTCAC-GGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
JMFN006D24+ GATGACACGGGCCCTGTCAC-GGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
JMFN010C16+ GATGACACGGGCCCTGTCAC-GGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
JMFN037D19+ GATGACACGGGCCCTGTCACGGGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
JMFN015D07+ GATGACACGGGCCCTGTCAC-GGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
____________________________________________________________
consensus GATGACACGGGCCCTGTCAC-GGCCTTTGTTTGGCACACTGCAACGGCGGTCTGGGCTCT
. : . : . : . : . : . :
JMFN044N06+ TCATCAGAACCACATCGCAGAGGTTATCTCCACGGTCG
JMFN018N23+ TCATCAGAACCACATCGCAGAGGTTATCTCCACGGTCGCCGTTCACCAGAATGTTGTATT
JMFN006D24+ TCATCAGAACCACATCGCAGAGGTTATCTCCACGGTCGCCGTTCACCAGAATGTTGTATT
JMFN010C16+ TCATCAGAACCACATCGCAGAGGTTATCTCCACGGTCGCCGTTCACCAGAATGTTGTATT
JMFN037D19+ TCATCAGAACCACATCGCAGAGGTTATCTCCGCGGTCGCCGTTCACCAGAATGTTGTATT
JMFN015D07+ TCATCAGAACCACATCGCAGAGGTTATCTCCACGGTCGCCGTTCACCAGAATGTTGTATT
____________________________________________________________
consensus TCATCAGAACCACATCGCAGAGGTTATCTCCACGGTCGCCGTTCACCAGAATGTTGTATT
. : . : . : . : . : . :
JMFN018N23+ CTCCATCGGAGTTTGTCACGCCGTCGATGGTGTAGGTGAGAGCATTGGTCTTTCTGTCCT
JMFN006D24+ CTCCATCGGAGTTTGTCACGCCGTCGATGGTGTAGGTGAGAGCATTGGTCTTTCTGTCCT
JMFN010C16+ CTCCATCGGAGTTTGTCACGCCGTCGATGGTGTAGGTGAGAGCATTGGTCTTTCTGTCCT
JMFN037D19+ CTCCATCGGAGTTTGTCACGCCGTCGATGGTGTAGGTGAGAGCATTGGTCTTTCTGTCCT
JMFN015D07+ CTCCATCGGAGTTTGTCACGCCGTCGATGGTGTAGGTGAGAGCATTGGTCTTTCTGTCCT
____________________________________________________________
consensus CTCCATCGGAGTTTGTCACGCCGTCGATGGTGTAGGTGAGAGCATTGGTCTTTCTGTCCT
. : . : . : . : . : . :
JMFN018N23+ TGCACTGAATCTGAACCGTCACCCCGGCGAGGTACTTGGTGGCGGTAGTTTCAAAGCCGC
JMFN006D24+ TGCACTGAATCTGAACCGTCACCCCGGCGAGGTACTTGGTGGCGGTAGTTTCAAAGCCGC
JMFN010C16+ TGCACTGAATCTGAACCGTCACCCCGGCGAGGTACTTGGTGGCGGTAGTTTCAAAGCCGC
JMFN037D19+ TGCACTGAATCTGAACCGTCACCCCGGCGAGGTACTTGGTGGCGGTAGTTTCAAAGCCGC
JMFN015D07+ TGCACTGAATCTGAACCGTCACCCCGGCGAGGTACTTGGTGGCGGTAGTTTCAAAGCCGC
____________________________________________________________
consensus TGCACTGAATCTGAACCGTCACCCCGGCGAGGTACTTGGTGGCGGTAGTTTCAAAGCCGC
. : . : . : . : . : . :
JMFN018N23+ AGTTGCAGGTATCACAGTAGGCTTTGC
JMFN006D24+ AGTTGCAGGTATCACAGTAGGCTTTGCCCTTCACGAGAAAAGGGTTGCCGGAGGAGTGAG
JMFN010C16+ AGTTGCAGGTATCACAGTAGGCTTTGCCCTTCACGAGAAAAGGGTTGCCGGAGGAGTGAG
JMFN037D19+ AGTTGCAGGTATCACAGTAGGCTTTGCCCTTCACGAGAAAAGGGTTGCCGGAGGAGTGAG
JMFN015D07+ AGTTGCAGGTATCACAGTAGGCTTTGCCCTTAACGAGAAAAGGGTTGCCGGAGGAGTGAG
____________________________________________________________
consensus AGTTGCAGGTATCACAGTAGGCTTTGCCCTTCACGAGAAAAGGGTTGCCGGAGGAGTGAG
. : . : . : . : . : . :
JMFN006D24+ CGCCGACGATAGTAGCTGAGAGGAAGCAGAGAGCAAAGAACGCTGTCAATCTTTCCATCT
JMFN010C16+ CGCCGACGATAGTAGCTGAGAGGAAGCAGAGAGCAAAGAACGCTGTCAATCTTTCCATCT
JMFN037D19+ CGCCGACGATAGTAGCTGAGAGGAAGCAGAGAGCAAAGAACGCTGTCAATCTTTCCATCT
JMFN015D07+ CGCCGACGATAGTAGCTGAGAGGAAGCAGAGAGCAAAGAACGCTGTCAATCTTTCCATCT
____________________________________________________________
consensus CGCCGACGATAGTAGCTGAGAGGAAGCAGAGAGCAAAGAACGCTGTCAATCTTTCCATCT
. : . : . : . : . : . :
JMFN006D24+ TCAAGCTGGGTTTTTG
JMFN010C16+ TCAAGCTGGGTTTTTGCTCCTCCTTTCTGGTTCAGTTCTGCCGGAGAGGAAAAG
JMFN037D19+ TCAAGCTGGGTTTTTGCTCCTCCTTTCTGGTTCAGTTCTGCCGGAGAGGAAAAG
JMFN015D07+ TCAAGCTGGGTTTTTGCTCCTCCTTTCTGGTTCAGTTCTGCCGGAGAGGAAAAGCAGTGA
____________________________________________________________
consensus TCAAGCTGGGTTTTTGCTCCTCCTTTCTGGTTCAGTTCTGCCGGAGAGGAAAAGCAGTGA