Contig 003323:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011E04Sequence634003323 (5)ref|XP_006385859.1|5e-51DREPP plasma membrane polypeptide family protein [Populus trichocarpa] gb|ERP636650003323 (5)gb|ABE66404.1|6e-23DREPP4 protein [Striga asiatica]
JMFN013G19Sequence622003323 (5)ref|XP_006385859.1|3e-52DREPP plasma membrane polypeptide family protein [Populus trichocarpa] gb|ERP636
JMFN013G21Sequence352003323 (5)ref|XP_006385859.1|1e-17DREPP plasma membrane polypeptide family protein [Populus trichocarpa] gb|ERP636
JMFN040B11Sequence656003323 (5)ref|XP_006385859.1|3e-52DREPP plasma membrane polypeptide family protein [Populus trichocarpa] gb|ERP636

Alignment

This contig is upended


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rJMFF011E04-                                                     ACATATATAAAATAAAT
                      ____________________________________________________________
consensus                                                        ACATATATAAAATAAAT
 
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rJMFF011E04-          ATTTTTACCAATAAACCAAACATAAAATACTATTCTATGAATCCATGATCATCAATAAAG
                      ____________________________________________________________
consensus             ATTTTTACCAATAAACCAAACATAAAATACTATTCTATGAATCCATGATCATCAATAAAG
 
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rJMFF011E04-          AATAAAAAAAAAAAACTAAAAAAACCACNTTTATATTTTCTTACAACACAAATTACGGCA
JMFF011E04+                                                                   GGCA
JMFN040B11+                                                                   GGCA
                      ____________________________________________________________
consensus             AATAAAAAAAAAAAACTAAAAAAACCACNTTTATATTTTCTTACAACACAAATTACGGCA
 
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rJMFF011E04-          ACTTTATGCACAAATTTGATGATAAGCGTATGATGGGACGTCGNGGNCATCAATTGAAAT
JMFF011E04+           ACTTTATGCACAAATTTGATGATAAGCGTATGATGGGACGTCGTGGTCATCAATTGAGAT
JMFN040B11+           ACTTTATGCACAAATTTGATGATAAGCGTATGATGGGACGTCGTGGTCATCAATTGAGAT
                      ____________________________________________________________
consensus             ACTTTATGCACAAATTTGATGATAAGCGTATGATGGGACGTCGTGGTCATCAATTGAGAT
 
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rJMFF011E04-          CAGGCTTTGGCCGCCNCCTCAGCCGTTTTTTCTTCCGGCTTTGGNGGTTCAACGGCGGCC
JMFF011E04+           CAGGCTTTGGCCGCCGCCTCAGCCGTTTTTTCTTCCGGCTTTGGTGGTTCAACGGCGGCC
JMFN040B11+           CAGGCTTTGGCCGCCGCCTCAGCCG-TTTTTCTTCCGGCTTTGGTGGTTCAACGGCGGCC
JMFN013G19+                                     TTTTTCTTCCGGCTTTGGTGGTTCAACGGCGGCC
                      ____________________________________________________________
consensus             CAGGCTTTGGCCGCCGCCTCAGCCGTTTTTTCTTCCGGCTTTGGTGGTTCAACGGCGGCC
 
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rJMFF011E04-          GGCTCANCTGCCGGGGGCTCCNCTTCCCCATTTTTCTTANNGTCTTCTTCAGNANCCACT
JMFF011E04+           GGCTCAGCTGCCGGTGGCTCCGCTTCCCCATTTTTCTTAGTGTCTTCTTCAGTAGCCACT
JMFN040B11+           GGCTCAGCTGCCGGTGGCTCCGCTTCCCCATTTTTCTTAGTGTCTTCTTCAGTAGCCACT
JMFN013G19+           GGCTCAGCTGCCGGTGGCTCCGCTTCCCCATTTTTCTTAGTGTCTTCTTCAGTAGCCACT
                      ____________________________________________________________
consensus             GGCTCAGCTGCCGGTGGCTCCGCTTCCCCATTTTTCTTAGTGTCTTCTTCAGTAGCCACT
 
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rJMFF011E04-          GCCTCCTTCTCACTCACCTCCGGGGCTGGNGGCGCCNCCTCTTCTTTCTTCTCCTCCGGG
JMFF011E04+           GCCTCCTTCTCACTCACCTCCGGGGCTGGCGGCGCCGCCTCTTCTTTCTTCTCCTCCGGG
JMFN040B11+           GCCTCCTTCTCACTCACCTCCGGGGCTGGCGGCGCCGCCTCTTCTTTCTTCTCCTCCGGG
JMFN013G19+           GCCTCCTTCTCACTCACCTCCGGGGCTGGCGGCGCCGCCTCTTCTTTCTTCTCCTCCGGG
                      ____________________________________________________________
consensus             GCCTCCTTCTCACTCACCTCCGGGGCTGGCGGCGCCGCCTCTTCTTTCTTCTCCTCCGGG
 
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rJMFF011E04-          AGCAAAAAAAACACTTTCTCAAANACNAAAAAAACCGGAGCCGACAAGTATGCTGCCCCC
JMFF011E04+           AGCAAAGAAGACACTTTCTCAAAGACGAAGAAAACCGGAGCCGACAAGTATGCTGCCCCC
JMFN040B11+           AGCAAAGAAGACACTTTCTCAAAGACGAAGAAAACCGGAGCCGACAAGTATGCTGCCCCC
JMFN013G19+           AGCAAAGAAGACACTTTCTCAAAGACGAAGAAAACCGGAGCCGACAAGTATGCTGCCCCC
                      ____________________________________________________________
consensus             AGCAAAGAAGACACTTTCTCAAAGACGAAGAAAACCGGAGCCGACAAGTATGCTGCCCCC
 
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rJMFF011E04-          ACCTTAAAACACNCTTCNCTCACCNCCTTTGATCCCGGAAAATCACTCTTGGCAAGCTCG
JMFF011E04+           ACCTTAGAACACGCTTCGCTCACCGCCTTTGATCCCGGAAAATCACTCTTGGCAAGCTCG
JMFN040B11+           ACCTTAGAACACGCTTCGCTCACCGCCTTTGATCCCGGAAAATCACTCTTGGCAAGCTCG
JMFN013G19+           ACCTTAGAACACGCTTCGCTCACCGCCTTTGATCCCGGAAAATCACTCTTGGCAAGCTCG
                      ____________________________________________________________
consensus             ACCTTAGAACACGCTTCGCTCACCGCCTTTGATCCCGGAAAATCACTCTTGGCAAGCTCG
 
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rJMFF011E04-          TCAAAAAACTTGNGAATTGCAGCTGAGTTCTTCTTCAACCCTGNATCCTTAGGATCTTTC
JMFF011E04+           TCAAGAAACTTGTGAATTGCAGCTGAGTTCTTCTTCAACCCTGTATCCTTAGGATCTTTC
JMFN040B11+           TCAAGAAACTTGTGAATTGCAGCTGAGTTCTTCTTCAACCCTGTATCCTTAGGATCTTTC
JMFN013G19+           TCAAGAAACTTGTGAATTGCAGCTGAGTTCTTCTTCAACCCTGTATCCTTAGGATCTTTC
JMFN013G21+                          ATTGCAGCTGAGTTTTTGTTCTACCCTGTATCCTTAGGATCTTTC
                      ____________________________________________________________
consensus             TCAAGAAACTTGTGAATTGCAGCTGAGTTCTTCTTCAACCCTGTATCCTTAGGATCTTTC
 
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rJMFF011E04-          ACCAAAGCCTTGATCTCAGTTGAAAAAGCTTCATAAATTTCAACAACTCTGGGTTGAAGC
JMFF011E04+           ACCAAAGCCTTGATCTCAGTTGAAGAAGCTTCATAAATTTCAACAACTCTGGGTTGAAGC
JMFN040B11+           ACCAAAGCCTTGATCTCAGTTGAAGAAGCTTCATAAATTTCAACAACTCTGGGTTGAAGC
JMFN013G19+           ACCAAAGCCTTGATCTCAGTTGAAGAAGCTTCATAAATTTCAACAACTCTGGGTTGAAGC
JMFN013G21+           ACCAAAGCCTTGATCTCAGTTGAAGAAGCTTCATAAATTTCAACAACTCTGGGATGAAGC
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consensus             ACCAAAGCCTTGATCTCAGTTGAAGAAGCTTCATAAATTTCAACAACTCTGGGTTGAAGC
 
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rJMFF011E04-          TCAGTCTTCTTCTCTTCNAAATCCTTTCCATAC                           
JMFF011E04+           TCAGTCTTCTTCTCTTCGAAATCCTTTCCATACTCCTCCTTAGAGTCTTCGAAGGTCTTG
JMFN040B11+           TCAGTCTTCTTCTCTTCGAAATCCTTTCCATACTCCTCCTTAGAGTCTTCGAAGGTCTTG
JMFN013G19+           TCAGTCTTCTTCTCTTCGAAATCCTTTCCATACTCCTCCTTAGAGTCTTCGAAGGTCTTG
JMFN013G21+           TCAGTCTTCTTCTCTAGGAAATCCTTTCCATACTCCTCCTTAGAGTCATCGAAGGTCTTG
                      ____________________________________________________________
consensus             TCAGTCTTCTTCTCTTCGAAATCCTTTCCATACTCCTCCTTAGAGTCTTCGAAGGTCTTG
 
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JMFF011E04+           CAGAG-CTCTGCAGCAGCAGCCTTCTTGGTGCCACTCTT-TTCAAAAATTTTCTTGATTT
JMFN040B11+           CAGAG-CTCTGCAGCAGCAGCCTTCTTGGTGCCACTCTT-TTCAAAAATTTTCTTGATTT
JMFN013G19+           CAGAG-CTCTGCAGCAGCAGCCTTCTTGGTGCCACTCTT-TTCAAAAATTTTCTTGATTT
JMFN013G21+           CAGAGACTCTGCAGCAGCAGCCTTCTTGGTGCCACTCTTGTTCAAAAATTTTCTTGATTT
                      ____________________________________________________________
consensus             CAGAG-CTCTGCAGCAGCAGCCTTCTTGGTGCCACTCTT-TTCAAAAATTTTCTTGATTT
 
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JMFF011E04+           TGGGAGCAACCTTGGATTTCCAATAAT                                 
JMFN040B11+           TGGGAGCAACCTTGGATTTCCAATAATCCATGCTTGAAACTAACGAACTCGATT      
JMFN013G19+           TGGGAGCAACCTTGGATTTCCAATAATCCATGCTTGAAACTAACGAACTCGATTAGTGGT
JMFN013G21+           TGGGAGCAACCTTGGATTTCCAATAATCCATGCTTGAAACTAGCGAACTCGATTAGTGGT
                      ____________________________________________________________
consensus             TGGGAGCAACCTTGGATTTCCAATAATCCATGCTTGAAACTAACGAACTCGATTAGTGGT
 
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JMFN013G19+           GAGATGGATGTTTGTCCTGTACGTGTTGTTGGTTTGGAGGAGA                 
JMFN013G21+           TAGATGGATGTTTGTCCTGTACGAGAAGTTGGTTTGGAGGAGATCCTCGTGCCGAAATTC
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consensus             TAGATGGATGTTTGTCCTGTACGTGTTGTTGGTTTGGAGGAGATCCTCGTGCCGAAATTC