Contig 003320:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN006L03Sequence628003320 (4)ref|XP_004234108.1|3e-27PREDICTED: uncharacterized protein LOC101255560 isoform X4 [Solanum lycopersicu
JMFN010P02Sequence526003320 (4)ref|XP_009607985.1|2e-28PREDICTED: uncharacterized protein LOC104102077 isoform X3 [Nicotiana tomentosi
JMSF007H10Sequence469003320 (4)ref|XP_006361023.1|3e-32PREDICTED: uncharacterized protein LOC102579909 isoform X2 [Solanum tuberosum]557003320 (4)ref|XP_006361023.1|7e-32PREDICTED: uncharacterized protein LOC102579909 isoform X2 [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN006L03+ ATGAG
                      ____________________________________________________________
consensus ATGAG
 
. : . : . : . : . : . :
JMFN006L03+ AGAGTAACTCGACACCAGATTAGTTGAAAATTATACAACAATAAAATATCAGGAATCATG
                      ____________________________________________________________
consensus AGAGTAACTCGACACCAGATTAGTTGAAAATTATACAACAATAAAATATCAGGAATCATG
 
. : . : . : . : . : . :
JMFN006L03+ ATTAACCCAATTTGACTAACATTGGCTAATGTTGCTATCTATCTGTCTAGACTAGATGCA
                      ____________________________________________________________
consensus ATTAACCCAATTTGACTAACATTGGCTAATGTTGCTATCTATCTGTCTAGACTAGATGCA
 
. : . : . : . : . : . :
JMFN006L03+ CAATGAAACTAAACTTACAGATATATTATTTTTGTCAAAGAAACATGTGCATCATTTTCA
                      ____________________________________________________________
consensus CAATGAAACTAAACTTACAGATATATTATTTTTGTCAAAGAAACATGTGCATCATTTTCA
 
. : . : . : . : . : . :
JMFN006L03+ AATGAAAGAACAAAAAACCTTATAACTTTGAAATGGGAACCAAACAGAACCTATAATGCC
                      ____________________________________________________________
consensus AATGAAAGAACAAAAAACCTTATAACTTTGAAATGGGAACCAAACAGAACCTATAATGCC
 
. : . : . : . : . : . :
JMFN006L03+ ACAGGCTGTGTAGTAATACATTGTCCATTGACATCCATGGTACTATGAAGAAGACGTGAA
                      ____________________________________________________________
consensus ACAGGCTGTGTAGTAATACATTGTCCATTGACATCCATGGTACTATGAAGAAGACGTGAA
 
. : . : . : . : . : . :
JMFN006L03+ TGGTTTCCGATTTTCCCAACACATCTAACAATCATCCATCTTCAAGACTCCAACCACGGC
JMSF007H10+ AATCTTCAAGACTCCAACCACGGC
rJMSF007H10- ATCTTCAAGACTCCAACCACGGC
JMFN010P02+ ATCTTCAAGACTCCAACCACGGC
                      ____________________________________________________________
consensus TGGTTTCCGATTTTCCCAACACATCTAACAATCATCCATCTTCAAGACTCCAACCACGGC
 
. : . : . : . : . : . :
JMFN006L03+ TCCGGGGAGCGACTGAGAGCATGGAATTGAGCAAAGCACAGGCAGTCGCCGTGTGATACG
JMSF007H10+ TCCGGGGAGCGACTGAGAGCATGGAATTGAGCAAAGCACAGGCAGTCGCCGTGTGATACG
rJMSF007H10- TCCGGGGAGCGACTGAGAGCATGGAATTGAGCAAAGCACAGGCAGTCGCCGTGTGATACG
JMFN010P02+ TCCGGGGAGCGACTGAGAGCATGGAATTGAGCAAAGCACAGGCAGTCGCCGTGTGATACG
                      ____________________________________________________________
consensus TCCGGGGAGCGACTGAGAGCATGGAATTGAGCAAAGCACAGGCAGTCGCCGTGTGATACG
 
. : . : . : . : . : . :
JMFN006L03+ GCAGCATAGTCTCTACTCTAACACAGCTCAACTCCAAAGGAGACCTGAAGATGCGTGCAG
JMSF007H10+ GCAGCATAGTCTCTACTCTAACACAGCTCAACTCCAAAGGAGACCTGAAGATGCGTGCAG
rJMSF007H10- GCAGCATAGTCTCTACTCTAACACAGCTCAACTCCAAAGGAGACCTGAAGATGCGTGCAG
JMFN010P02+ GCAGCATAGTCTCTACTCTAACACAGCTCAACTCCAAAGGAGACCTGAAGATGCGTGCAG
                      ____________________________________________________________
consensus GCAGCATAGTCTCTACTCTAACACAGCTCAACTCCAAAGGAGACCTGAAGATGCGTGCAG
 
. : . : . : . : . : . :
JMFN006L03+ TGAGGGGCTTCTGAGTGGGGATGCGAAAAGGAGAGCCGGAGGTCTTAGGCTTCGCTCCAG
JMSF007H10+ TGAGGGGCTTCTGAGTGGGGATGCGAAAAGGAGAGCCGGAGGTCTTAGGCTTCGCTCCAG
rJMSF007H10- TGAGGGGCTTCTGAGTGGGGATGCGAAAAGGAGAGCCGGAGGTCTTAGGCTTCGCTCCAG
JMFN010P02+ TGAGGGGCTTCTGAGTGGGGATGCGAAAAGGAGAGCCGGAGGTCTTAGGCTTCGCTCCAG
                      ____________________________________________________________
consensus TGAGGGGCTTCTGAGTGGGGATGCGAAAAGGAGAGCCGGAGGTCTTAGGCTTCGCTCCAG
 
. : . : . : . : . : . :
JMFN006L03+ TTGCCAGTCTGGTTGCGGCGGTCCGGGCGGAGGCTGTGGCGGAGCGAAAGACGGACCTGG
JMSF007H10+ TTGCCAGTCTGGTTGCGGCGGTCCGGGCGGAGGCTGTGGCGGAGCGAAAGACGGACCTGG
rJMSF007H10- TTGCCAGTCTGGTTGCGGCGGTCCGGGCGGAGGCTGTGGCGGAGCGAAAGACGGACCTGG
JMFN010P02+ TTGCCAGTCTGGTTGCGGCGGTCCGGGCGGAGGCTGTGGCGGAGCGAAAGACGGACCTGG
                      ____________________________________________________________
consensus TTGCCAGTCTGGTTGCGGCGGTCCGGGCGGAGGCTGTGGCGGAGCGAAAGACGGACCTGG
 
. : . : . : . : . : . :
JMFN006L03+ CGGCGATGGTGGCCATGGTTTCT
JMSF007H10+ CGGCGATGGTGGCCATGGTTTCTTCAGGTACAGATCGCGCTGCG
rJMSF007H10- CGGCGATGGTGGCCATGGTTTCTTCAGGTACAGATCGCGCTGCG
JMFN010P02+ CGGCGATGGTGGCCATGGTTTCTTCAGGTACAGATCGCGCTGCGAGTGGCTTGGATTTGA
                      ____________________________________________________________
consensus CGGCGATGGTGGCCATGGTTTCTTCAGGTACAGATCGCGCTGCGAGTGGCTTGGATTTGA