Contig 003316:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF029F08-                                                                  AGAG
                      ____________________________________________________________
consensus                                                                     AGAG
 
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rJMSF029F08-          GATAGGGTCTTTTTTTCACCCCTCCCCAATAAATAGTTTGATGTGAAGTTCTACTTGTTC
                      ____________________________________________________________
consensus             GATAGGGTCTTTTTTTCACCCCTCCCCAATAAATAGTTTGATGTGAAGTTCTACTTGTTC
 
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rJMSF029F08-          TTTGGATATAATAACAACATAATGTACATAGACAGCCTGTTAAGGAAATAGGAGCGGTTA
                      ____________________________________________________________
consensus             TTTGGATATAATAACAACATAATGTACATAGACAGCCTGTTAAGGAAATAGGAGCGGTTA
 
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rJMSF029F08-          ACAGAGGTTAAGGATCTACTGGGCCTGCAACTGCCTCATCGCTTGAATCATATTCGTTTT
JMFN009O19+                                              TCATCGCTTGAATCATATTCGTTTT
                      ____________________________________________________________
consensus             ACAGAGGTTAAGGATCTACTGGGCCTGCAACTGCCTCATCGCTTGAATCATATTCGTTTT
 
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rJMSF029F08-          CGCTCAACTCTTCATCACTGGACATCTCTTCTGGGCCAACTCCAACATCTTCGGCTTTGG
JMFN028A07+                                                                   TTGG
JMFN009O19+           CGCTCAACTCTTCATCACTGGACATCTCTTCTGGGCCAACTCCAACATCTTCGGCTTTGG
                      ____________________________________________________________
consensus             CGCTCAACTCTTCATCACTGGACATCTCTTCTGGGCCAACTCCAACATCTTCGGCTTTGG
 
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rJMSF029F08-          CATATTTCTCACAGTATTCTTTAACTCTTTGTTCATATGCAGTGCGGTCTCGCATCATCA
JMFN028A07+           CATATTTCTCACAGTATTCTTTAACTCTTTGTTCATATGCAGTGCGGTCTCGCATCATCA
JMFN009O19+           CATATTTCTCACAGTATTCTTTAACTCTTTGTTCATATGCAGTGCGGTCTCGCATCATCA
                      ____________________________________________________________
consensus             CATATTTCTCACAGTATTCTTTAACTCTTTGTTCATATGCAGTGCGGTCTCGCATCATCA
 
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rJMSF029F08-          AAGCAGCCGCCTCCCCGTTCAATGGGTCTGATGGGTTAGGGTACAAAAGAAGTTGAGGGA
JMFN028A07+           AAGCAGCCGCCTCCCCGTTCAATGGGTCTGATGGGTTAGGGTACAAAAGAAGTTGAGGGA
JMFN009O19+           AAGCAGCCGCCTCCCCGTTCAATGGGTCTGATGGGTTAGGGTACAAAAGAAGTTGAGGGA
                      ____________________________________________________________
consensus             AAGCAGCCGCCTCCCCGTTCAATGGGTCTGATGGGTTAGGGTACAAAAGAAGTTGAGGGA
 
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rJMSF029F08-          GAAACACTTCAAAGACATTTACCAGATCAAACATGGGGCTCCAAGTCTGATTGATAACAT
JMFN028A07+           GAAACACTTCAAAGACATTTACCAGATCAAACATGGGGCTCCAAGTCTGATTGATAACAT
JMFN009O19+           GAAACACTTCAAAGACATTTACCAGATCAAACATGGGGCTCCAAGTCTGATTGATAACAT
                      ____________________________________________________________
consensus             GAAACACTTCAAAGACATTTACCAGATCAAACATGGGGCTCCAAGTCTGATTGATAACAT
 
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rJMSF029F08-          CTAAACAAACTGATCCTGACATCTCATCAACATTTGGATGGTAAATTTTGTTAACAAAGC
JMFN028A07+           CTAAACAAACTGATCCTGACATCTCATCAACATTTGGATGGTAAATTTTGTTAACAAAGC
JMFN009O19+           CTAAACAAACTGATCCTGACATCTCATCAACATTTGGATGGTAAATTTTGTTAACAAAGC
                      ____________________________________________________________
consensus             CTAAACAAACTGATCCTGACATCTCATCAACATTTGGATGGTAAATTTTGTTAACAAAGC
 
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rJMSF029F08-          CAATGGATGGTGATTTATAGGGATAAGCATCTGGAAGTTCAACCCTTATTTTCCAAACAC
JMFN028A07+           CAATGGATGGTGATTTATAGGGATAAGCATCTGGAAGTTCAACCCTTATTTTCCAAACAC
JMFN009O19+           CAATGGATGGTGATTTATAGGGATAAGCATCTGGAAGTTCAACCCTTATTTTCCAAACAC
                      ____________________________________________________________
consensus             CAATGGATGGTGATTTATAGGGATAAGCATCTGGAAGTTCAACCCTTATTTTCCAAACAC
 
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rJMSF029F08-          CACCATGATAAGGAC                                             
JMFN028A07+           CACCATGATAAGGACTCTCACTGGGTCCATTGAAATGAACATAGAACTCCTGCATCCCAT
JMFN009O19+           CACCATGATAAGGACTCTCACTGGGTCCATTGAAATGAACATAGAACTCCTGCATCCCAT
                      ____________________________________________________________
consensus             CACCATGATAAGGACTCTCACTGGGTCCATTGAAATGAACATAGAACTCCTGCATCCCAT
 
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JMFN028A07+           CATTTATCATCTCCACTTTGTAGTCACTCATCATCAGTTTCATCAAGTCCATCTCTCTGC
JMFN009O19+           CATTTATCATCTCCACTTTGTAGTCACTCATCATCAGTTTCATCAAGTCCATCTCTCTGC
                      ____________________________________________________________
consensus             CATTTATCATCTCCACTTTGTAGTCACTCATCATCAGTTTCATCAAGTCCATCTCTCTGC
 
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JMFN028A07+           GTTTGCTTGGGGAAGACATGATT                                     
JMFN009O19+           GTTTGCTTGGGGAAGACATGATTTTTCTCTGGATTTTCTGTTGTTTTTTTAATTCAAAAT
                      ____________________________________________________________
consensus             GTTTGCTTGGGGAAGACATGATTTTTCTCTGGATTTTCTGTTGTTTTTTTAATTCAAAAT
 
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JMFN009O19+           TTGTGGGTGGCTCTTGAAAACTAGGAAGGGGATGAGAGAAGAAAAAAAGAGTTTGCTTGT
                      ____________________________________________________________
consensus             TTGTGGGTGGCTCTTGAAAACTAGGAAGGGGATGAGAGAAGAAAAAAAGAGTTTGCTTGT