Contig 003315:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN009M02Sequence627003315 (2)ref|XP_009800543.1|2e-63PREDICTED: LOW QUALITY PROTEIN: 17.4 kDa class III heat shock protein [Nicotian
JMFN039C09Sequence496003315 (2)ref|XP_002268705.1|1e-15PREDICTED: 17.4 kDa class III heat shock protein [Vitis vinifera]

Alignment

This contig is upended


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JMFN009M02+                                         GTTTGCATATGGGAGCATGGAACTCAGAAA
                      ____________________________________________________________
consensus                                           GTTTGCATATGGGAGCATGGAACTCAGAAA
 
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JMFN009M02+           CTACTACTACATCATAATCCGATTAAACAAGTAAACTAGGAATTGATGCAAACAGCTTAG
                      ____________________________________________________________
consensus             CTACTACTACATCATAATCCGATTAAACAAGTAAACTAGGAATTGATGCAAACAGCTTAG
 
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JMFN039C09+                                               ATGGGCACCTCAATCGTCTTGTAC
JMFN009M02+           AATTGGCGGGCGTGTTCTCGATCGATCGGTCAGGAGATGGGCACCTCAATCGTCTTGGAC
                      ____________________________________________________________
consensus             AATTGGCGGGCGTGTTCTCGATCGATCGGTCAGGAGATGGGCACCTCAATCGTCTTGTAC
 
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JMFN039C09+           TTGGGCGGCGGAGGGTGCTTCTCCACCACCTCAGTGAGCTCCCCGTTCTCGCACTCGTCG
JMFN009M02+           TTGGGCGGCGGAGGGTGCTTCTCCACCACCACAGTGAGCACCCCGTTCTCGCACTTGGCG
                      ____________________________________________________________
consensus             TTGGGCGGCGGAGGGTGCTTCTCCACCACCTCAGTGAGCTCCCCGTTCTCGCACTTGTCG
 
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JMFN039C09+           GTAATGGCGGAGACGTCGCAGTTTTCCGTCAACTCGAATTTCCTCGCCACTTTGTGCGGG
JMFN009M02+           GTAATGGCGGAGACGTTGCAGTTTTCCGGCAACCTGAATTTCCTCGCCACTTTCTGC-GG
                      ____________________________________________________________
consensus             GTAATGGCGGAGACGTTGCAGTTTTCCGTCAACTTGAATTTCCTCGCCACTTTGTGCGGG
 
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JMFN039C09+           CGCCGCTTTCCTGTCCAACTTCAAATACTAGCACTATTCTTCCTCCCGGTTCCTGTTCCC
JMFN009M02+           CGCCGCCTTCCTCTCCAACCTCAAATACTTGCACTCTTCTTCCTCCCGCTTCCTCTTCCC
                      ____________________________________________________________
consensus             CGCCGCTTTCCTGTCCAACTTCAAATACTTGCACTCTTCTTCCTCCCGGTTCCTGTTCCC
 
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JMFN039C09+           GTTGGTAATGATCACCAGTGTCCTGTTATCCTCCACGTCCGCTTGAATGTCGTGATTTGG
JMFN009M02+           GTTGCTTTTGATCACCAGCGTCCTCTCATCCTCCACGCCCACCTGAATGTCG-GATTTGG
                      ____________________________________________________________
consensus             GTTGGTTTTGATCACCAGTGTCCTGTTATCCTCCACGTCCGCTTGAATGTCGTGATTTGG
 
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JMFN039C09+           ATAACCCGGTATCGTCGAGGTAGAAAACGTATTCGATAGGGGCGCTTGAGGATGTCGCCG
JMFN009M02+           ATAAGCCGGGAACGTCGAGGTAGAAAACGTATTCCTTAGGGGTG-TCGAGGATGTCGGCG
                      ____________________________________________________________
consensus             ATAAGCCGGTATCGTCGAGGTAGAAAACGTATTCGTTAGGGGTGCTTGAGGATGTCGGCG
 
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JMFN039C09+           GGAATTCTTCTGACTCCCCGGCTCTCCCCGCCGTCCGGTGCCCGGTACTCCGACGACACC
JMFN009M02+           GGAATGCTACCGACTCCCCGGCTCTCCCCGCCGTCCGGTGCCCGGTACTCCGACGACACC
                      ____________________________________________________________
consensus             GGAATTCTTCTGACTCCCCGGCTCTCCCCGCCGTCCGGTGCCCGGTACTCCGACGACACC
 
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JMFN039C09+           ATT                                                         
JMFN009M02+           ATTCTCTCTAGCACTTCCGGGATGTTGAGGAGCTGGGCCATCGCGTCCACCACTGCGCTC
                      ____________________________________________________________
consensus             ATTCTCTCTAGCACTTCCGGGATGTTGAGGAGCTGGGCCATCGCGTCCACCACTGCGCTC
 
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JMFN009M02+           ATTTCCGACGCCCGTACGTTGTTTCACAAATTTATTTTGCCCTTGATTGAATGGAAGAGA
                      ____________________________________________________________
consensus             ATTTCCGACGCCCGTACGTTGTTTCACAAATTTATTTTGCCCTTGATTGAATGGAAGAGA