| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009C15 | Sequence | 472 | 003310 (8) | ref|XP_009613873.1| | 4e-58 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial | 548 | 003310 (8) | ref|XP_009613873.1| | 6e-52 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial |
| JMFF018J16 | Sequence | 472 | 003310 (8) | ref|XP_009613873.1| | 4e-58 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial | 547 | 003310 (8) | ref|XP_009768783.1| | 3e-51 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial |
| JMFF051I15 | Sequence | 561 | 006506 (6) | ref|XP_009588232.1| | 3e-96 | PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Nicotiana to | 545 | 003310 (8) | ref|XP_009613873.1| | 1e-53 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial |
| JMFN006P11 | Sequence | 237 | 003310 (8) | ref|XP_009613873.1| | 2e-10 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial | |||||
| JMFN030P04 | Sequence | 542 | 003310 (8) | ref|XP_009613873.1| | 1e-57 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial | |||||
| JMFN035G22 | Sequence | 615 | 003310 (8) | ref|XP_009613873.1| | 5e-57 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial | |||||
This contig is upended
. : . : . : . : . : . :
JMFN035G22+ CA
____________________________________________________________
consensus CA
. : . : . : . : . : . :
JMFN030P04+ AGACCAA
rJMFF051I15- AGACCAA
JMFN035G22+ AAAGGAAATATTCATTTAAACAATCAAAATCATTATGTTCACAAAAGAACAAAAGACCAA
____________________________________________________________
consensus AAAGGAAATATTCATTTAAACAATCAAAATCATTATGTTCACAAAAGAACAAAAGACCAA
. : . : . : . : . : . :
JMFN030P04+ GGATGTTGTTTTTATTATAGAGACTGCAACCTTGCAACATTAAAACGAGTTACAATACAA
rJMFF051I15- GGATGTTGTTCTTATTATAGAGACTGCAACCTTGCAACATTAAAACGAGTTACAATACAA
rJMFF009C15- TGTTGTTCTTATTATAGAGACTGCAACCTTGCAACATTAAAACGAGTTACAATACAA
rJMFF018J16- GTTGTTCTTATTATAGAGACTGCAACCTTGCAACATTAAAACGAGTTACAATACAA
JMFN035G22+ GGATGTTGTTCTTATTATAGAGACTGCAACCTTGCAACATTAAAACGAGTTACAATACAA
____________________________________________________________
consensus GGATGTTGTTCTTATTATAGAGACTGCAACCTTGCAACATTAAAACGAGTTACAATACAA
. : . : . : . : . : . :
JMFN030P04+ TTAAAAGAGGGCCTGGTCTATTTAGAAAACTTGCAAAAGAACATAATTGATCATGGTTTA
rJMFF051I15- TTAAAAGAGGGCCTGGTCTATTTAGAAAACTTGCAAAAGAACATAATTGATCATGGTTTA
rJMFF009C15- TTAAAAGAGGGCCTGGTCTATTTAGAAAACTTGCAAAAGAACATAATTGATCATGGTTTA
rJMFF018J16- TTAAAAGAGGGCCTGGTCTATTTAGAAAACTTGCAAAAGAACATAATTGATCATGGTTTA
JMFF018J16+ ATTTAGAAAACTTGCAAAAGAACATAATTGATCATGGTTTA
JMFF009C15+ ATTTAGAAAACTTGCAAAAGAACATAATTGATCATGGTTTA
JMFN035G22+ TTAAAAGAGGGCCTGGTCTATTTAGAAAACTTGCAAAAGAACATAATTGATCATGGTTTA
____________________________________________________________
consensus TTAAAAGAGGGCCTGGTCTATTTAGAAAACTTGCAAAAGAACATAATTGATCATGGTTTA
. : . : . : . : . : . :
JMFN030P04+ TCAAAAAAAAAAACATAATTGATCATGCAGCCCCTTAGTGGTGATGTCCGTGATCTTGGA
rJMFF051I15- TCAAAAAAAAAAACATAATTGATCATGCAGCCCCTTAGTGGTGATGTCCGTGATCTTGGA
rJMFF009C15- TCAAAAAAAAAAACATAATTGATCATGCAGCCCCTTAGTGGTGATGTCCGTGATCTTGGA
rJMFF018J16- TCAAAAAAAAAAACATAATTGATCATGCANCCCCTTAGNGGTGATGTCCGTGATCTTGGA
JMFF018J16+ TCAAAAAAAAAAACATAATTGATCATGCAGCCCCTTAGTGGTGATGTCCGTGATCTTGGA
JMFF009C15+ TCAAAAAAAAAAACATAATTGATCATGCAGCCCCTTAGTGGTGATGTCCGTGATCTTGGA
JMFN035G22+ TCAAAAAAAAAAACATAATTGATCATGCAGCCCCTTAGTGGTGATGTCCGTGATCTTGGA
____________________________________________________________
consensus TCAAAAAAAAAAACATAATTGATCATGCAGCCCCTTAGTGGTGATGTCCGTGATCTTGGA
. : . : . : . : . : . :
JMFN030P04+ AGTAGCGCAAGCCACAGTACTTGCAAACAGCGGGTGCATCCAAATCAAGGCATATAAACT
rJMFF051I15- AGTAGCGCAAGCCACAGTACTTGCAAACAGCGGGTGCATCCAAATCAAGGCATATAAACT
rJMFF009C15- AGTAGCGCAAGCCACAGTACTTGCAAACAGCGGGNGCATCCAAATCAAGGCATATAAACT
rJMFF018J16- AGTANCGCAAGCCACAGNACTTGCAAACAGCGGGNGCATCCAAATCAAGGCATATAAACT
JMFF018J16+ AGTAGCGCAAGCCACAGTACTTGCAAACAGCGGGTGCATCCAAATCAAGGCATATAAACT
JMFF009C15+ AGTAGCGCAAGCCACAGTACTTGCAAACAGCGGGTGCATCCAAATCAAGGCATATAAACT
JMFN035G22+ AGTAGCGCAAGCCACAGTACTTGCAAACAGCGGGTGCATCCAAATCAAGGCATATAAACT
____________________________________________________________
consensus AGTAGCGCAAGCCACAGTACTTGCAAACAGCGGGTGCATCCAAATCAAGGCATATAAACT
. : . : . : . : . : . :
JMFN030P04+ CAATCGGGTGCCCAAGAGCAGGGTCGCTATCTCCTTCACAGGCAACAATCCGGCCCTCCA
rJMFF051I15- CAATCGGGTGCCCAAGAGCAGGGTCGCTATCTCCTTCACAGGCAACAATCCGGCCCTCCA
rJMFF009C15- CAATCGGGTGCCCAANAGCAGGGTCGCTATCTCCTTCACAGGCAACAATCCGGCCCTCCA
rJMFF018J16- CAATCGGGNGCCCAAAAGCAGGGTCGCTATCTCCTTCACAGGCAACAATCCGGCCCTCCA
JMFF018J16+ CAATCGGGTGCCCAAGAGCAGGGTCGCTATCTCCTTCACAGGCAACAATCCGGCCCTCCA
JMFF009C15+ CAATCGGGTGCCCAAGAGCAGGGTCGCTATCTCCTTCACAGGCAACAATCCGGCCCTCCA
JMFN035G22+ CAATCGGGTGCCCAAGAGCAGGGTCGCTATCTCCTTCACAGGCAACAATCCGGCCCTCCA
____________________________________________________________
consensus CAATCGGGTGCCCAAGAGCAGGGTCGCTATCTCCTTCACAGGCAACAATCCGGCCCTCCA
. : . : . : . : . : . :
JMFN030P04+ CCTTAATAGGTGGAACTTCATTGATCAACTCCATAGGAGATTTTCTGCCAGTATCCTGCA
rJMFF051I15- CCTTAATAGGTGGAACTTCATTGATCAACTCCATAGGAGATTTTCTGCCAGTATCCTGCA
rJMFF009C15- CCTTAATAGGNGGAACTTCATTGATCAACTCCATAGGANATTTTCTGCCAGNATCCTGCA
rJMFF018J16- CCTTAATAGGNGGAACTTCATTGATCAACTCCATAGGANATTTTCTGCCAGNATCCTGCA
JMFF018J16+ CCTTAATAGGTGGAACTTCATTGATCAACTCCATAGGAGATTTTCTGCCAGTATCCTGCA
JMFF009C15+ CCTTAATAGGTGGAACTTCATTGATCAACTCCATAGGAGATTTTCTGCCAGTATCCTGCA
JMFN035G22+ CCTTAATAGGTGGAACTTCATTGATCAACTCCATAGGAGATTTTCTGCCAGTATCCTGCA
____________________________________________________________
consensus CCTTAATAGGTGGAACTTCATTGATCAACTCCATAGGAGATTTTCTGCCAGTATCCTGCA
. : . : . : . : . : . :
JMFN030P04+ TCCATTTAGCAGTGTGAGATGTGATGACCTCGCTGCTACCGATGCCGGCGGCGGCGCTGA
rJMFF051I15- TCCATTTAGCAGTGTGAGATGTGATGACCTCGCTGCTACCGATGCCGGCGGCGGCGCTGA
rJMFF009C15- TCCATTTANCAGNGTGANATGTGATGACCTCGCTGCTACCGATGCCGGCGGCGGCGCTGA
rJMFF018J16- TCCATTTANCAGNGTGAAATGTGATGACCTCNCTGCTACCGATGCCGGCGGCGGCGCTGA
JMFF018J16+ TCCATTTAGCAGTGTGAGATGTGATGACCTCGCTGCTACCGATGCCGGCGGCGGCGCTGA
JMFF009C15+ TCCATTTAGCAGTGTGAGATGTGATGACCTCGCTGCTACCGATGCCGGCGGCGGCGCTGA
JMFN035G22+ TCCATTTAGCAGTGTGAGATGTGATGACCTCGCTGCTACCGATGCCGGCGGCGGCGCTGA
JMFN006P11+ ATTTAGCAGTGTGAGATGTGATGACCTCGCTGCTACCGATGCCGGCGGCGGCGCTGA
____________________________________________________________
consensus TCCATTTAGCAGTGTGAGATGTGATGACCTCGCTGCTACCGATGCCGGCGGCGGCGCTGA
. : . : . : . : . : . :
JMFN030P04+ CACCCCTCGAGCCGGATGGGAAATTGGGCACCGAAGGTCTCGCAGTTAGGGTTTTCAATA
rJMFF051I15- CACCCCTCGAGCCGGATGGGAAATTGGGCACCGAAGGTCTCGCAGTTAGGGTTTTCAATA
rJMFF009C15- CACCCCTCGAGCCGGATGGGAAATTGGGCACCGAAGGTCTCGCAGTTAGGGTTTTCAATA
rJMFF018J16- CACCCCTCNAGCCGGATGGGAAATTGGGCACCGAAGGTCTCGCAGTTAGGGTTTTCAATA
JMFF018J16+ CACCCCTCGAGCCGGATGGGAAATTGGGCACCGAAGGTCTCGCAGTTAGGGTTTTCAATA
JMFF009C15+ CACCCCTCGAGCCGGATGGGAAATTGGGCACCGAAGGTCTCGCAGTTAGGGTTTTCAATA
JMFN035G22+ CACCCCTCGAGCCGGATGGGAAATTGGGCACCGAAGGTCTCGCAGTTAGGGTTTTCAATA
JMFN006P11+ CACCCCTCGAGCCGGATGGGAAATTGGGCACCGAAGGTCTCGCAGTTAGGGTTTTCAATA
____________________________________________________________
consensus CACCCCTCGAGCCGGATGGGAAATTGGGCACCGAAGGTCTCGCAGTTAGGGTTTTCAATA
. : . : . : . : . : . :
JMFN030P04+ GATTGGTAAACATTGCCACGCCCTGCTTCCTCCCGAATGAAGCCATCATTTGT
rJMFF051I15- GATTGGTAAACATTGCCACGCCCTGCTTCCT
rJMFF009C15- NATTGGTAAACATTGCCACGCCCTGCTTCCTCCCNAATGAAGCCATCATTTGTTCAGGCC
rJMFF018J16- AATTGGNAAACATTGCCACGCCCTGCTTCCTCCCNAATGAAGCCATCATTTGTTCAGGCC
JMFF018J16+ GATTGGTAAACATTGCCACGCCCTGCTTCCTCCCGAATGAAGCCATCATTTGTTCAGGCC
JMFF009C15+ GATTGGTAAACATTGCCACGCCCTGCTTCCTCCCGAATGAAGCCATCATTTGTTCAGGCC
JMFN035G22+ GATTGGTAAACATTGCCACGCCCTGCTTCCTCCCGAATGAAGCCATCATTTGTTCAGGCC
JMFN006P11+ GATTGGTAAACATTGCCACGCCCTGCTTCCTCCCGAATGAAGCCATCATTTGTTCAGGCC
____________________________________________________________
consensus GATTGGTAAACATTGCCACGCCCTGCTTCCTCCCGAATGAAGCCATCATTTGTTCAGGCC
. : . : . : . : . : . :
rJMFF009C15- TGAGGAAAATT
rJMFF018J16- TGAGGAAAATT
JMFF018J16+ TGAGGAAAATT
JMFF009C15+ TGAGGAAAATT
JMFN035G22+ TGAGGAAAATT
JMFN006P11+ TGAGGAAAATTACACGAAGGAATTTAACAACGCCGGATTCTTAATCAGATCTTTATTCCT
____________________________________________________________
consensus TGAGGAAAATTACACGAAGGAATTTAACAACGCCGGATTCTTAATCAGATCTTTATTCCT