Contig 003308:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN004D07Sequence618003308 (4)emb|CDP03039.1|4e-24unnamed protein product [Coffea canephora]
JMFN006A13Sequence642003308 (4)emb|CDP03039.1|7e-24unnamed protein product [Coffea canephora]
JMFN006A15Sequence638003308 (4)emb|CDP03039.1|8e-24unnamed protein product [Coffea canephora]
JMFN030F18Sequence595003308 (4)ref|XP_002275644.1|95.5PREDICTED: uncharacterized protein LOC100266455 [Vitis vinifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004D07+                          GCCGGCGCCGCCCCCACGGCGTTGATCTCTCTCATGAATCTCCAT
JMFN006A13+                                 CCGCCCCCACGGCGTTGATCTCTCTCATGAATCTCCAT
JMFN030F18+                                                                   CCAT
JMFN006A15+                                 CCGCCCCCACGGCGTTGATCTCTCTCATGAATCTCCAT
                      ____________________________________________________________
consensus                            GCCGGCGCCGCCCCCACGGCGTTGATCTCTCTCATGAATCTCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004D07+           GCATTTCAGCAAATATTTAAAGGTCTCGATTTCGCACGGGATTATGAGCCCCCCGCGGTG
JMFN006A13+           GCATTTCAGCAAATATTTAAAGGTCTCGATTTCGCACGGGATTATGAGCCCCCCGCGGTG
JMFN030F18+           GCATTTCAGCAAATATTTAAAGGTCTGGATTTCGCACGGGATTATGAGCCCCCCGCGGTG
JMFN006A15+           GCATTTCAGCAAATATTTAAAGGTCTCGATTTCGCACGGGATTATGAGCCCCCCGCGGTG
                      ____________________________________________________________
consensus             GCATTTCAGCAAATATTTAAAGGTCTCGATTTCGCACGGGATTATGAGCCCCCCGCGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004D07+           CTCAAACCCGAACTCCTCTTCCACTTTTTCCAGCAACACCTTGAACAGCGGATCGCTTAG
JMFN006A13+           CTCAAACCCGAACTCCTCTTCCACTTTTTCCAGCAACACCTTGAACAGCGGATCGCTTAG
JMFN030F18+           CTCAAACCCGAACTCCTCTTCCACTTTTTCCAGCAACACCTTGAACAGCGGATCGCTTAG
JMFN006A15+           CTCAAACCCGAACTCCTCTTCCACTTTTTCCAGCAACACCTTGAACAGCGGATCGCTTAG
                      ____________________________________________________________
consensus             CTCAAACCCGAACTCCTCTTCCACTTTTTCCAGCAACACCTTGAACAGCGGATCGCTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004D07+           ATAGGTGGTCGGAATTATGAACCGCCGCAGCACCTCCCCCCGCCCCACGTATACCCCCAT
JMFN006A13+           ATAGGTGGTCGGAATTATGAACCGCCGCAGCACCTCCCCCCGCCCCACGTATACCCCCAT
JMFN030F18+           ATAGGTGGTCGGAATTATGAACCGCCGCAGCACCTCCCCCCGCCCCACGTATACCCCCAT
JMFN006A15+           ATAGGTGGTCGGAATTATGAACCGCCGCAGCACCTCCCCCCGCCCCACGTATACCCCCAT
                      ____________________________________________________________
consensus             ATAGGTGGTCGGAATTATGAACCGCCGCAGCACCTCCCCCCGCCCCACGTATACCCCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004D07+           GTACCCCTTCGGCACGTCCGCCGGCGCCTGCCTCACGCAATCGGCGCTCTTTACCGCCGG
JMFN006A13+           GTACCCCTTCGGCACGTCCGCCGGCGCCTGCCTCACGCAATCGGCGCTCTTTACCGCCGG
JMFN030F18+           GTACCCCTTCGGCACGTCCGCCGGCGCCTGCCTCACGCAATCGGCGCTCTTTACCGCCGG
JMFN006A15+           GTACCCCTTCGGCACGTCCGCCGGCGCCTGCCTCACGCAATCGGCGCTCTTTACCGCCGG
                      ____________________________________________________________
consensus             GTACCCCTTCGGCACGTCCGCCGGCGCCTGCCTCACGCAATCGGCGCTCTTTACCGCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004D07+           CGAAACGCTAGCCGTCGTCTCCACCGTCGTCGTAGTCCTCCTAACGGAATTGTTACGCGC
JMFN006A13+           CGAAACGCTAGCCGTCGTCTCCACCGTCGTCGTAGTCCTCCTAACGGAATTGTTACGCGC
JMFN030F18+           CGAAACGCTAGCCGTCGTCTCCACCGTCGTCGTAGTCCTCCTAACGGAATTGTTACGCGC
JMFN006A15+           CGAAACGCTAGCCGTCGTCTCCACCGTCGTCGTAGTCCTCCTAACGGAATTGTTACGCGC
                      ____________________________________________________________
consensus             CGAAACGCTAGCCGTCGTCTCCACCGTCGTCGTAGTCCTCCTAACGGAATTGTTACGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004D07+           GATGCGTTTCCACTTTCGCACGAATCCCATCAGCCTTACGATGCGGCGGATCCCGCACAC
JMFN006A13+           GATGCGTTTCCACTTTCGCACGAATCCCATCAGCCTTACGATGCGGCGGATCCCGCACAC
JMFN030F18+           GATGCGTTTCCACTTTCGCACGAATCCCATCAGCCTTACGATGCGGCGGATCCCGCACAC
JMFN006A15+           GATGCGTTTCCACTTTCGCACGAATCCCATCAGCCTTACGATGCGGCGGATCCCGCACAC
                      ____________________________________________________________
consensus             GATGCGTTTCCACTTTCGCACGAATCCCATCAGCCTTACGATGCGGCGGATCCCGCACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004D07+           CTTCCTCTTTTCCCCGACTAATAATTCTGCCATTCTGATACCGGCGCGGCGGATAGACGG
JMFN006A13+           CTTCCTCTTTTCCCCGACTAATAATTCTGCCATTCTGATACCGGCGCGGCGGATAGACGG
JMFN030F18+           CTTCCTCTTTTCCCCGACTAATAATTCTGCCATTCTGATACCGGCGCGGCGGATAGACGG
JMFN006A15+           CTTCCTCTTTTCCCCGACTAATAATTCTGCCATTCTGATACCGGCGCGGCGGATAGACGG
                      ____________________________________________________________
consensus             CTTCCTCTTTTCCCCGACTAATAATTCTGCCATTCTGATACCGGCGCGGCGGATAGACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004D07+           CGGCGAAGGAGAAATCTGGCGGCGGCGGAGGCGGATAGACGGCGGCGAGGGATAGATCAG
JMFN006A13+           CGGCGAAGGAGAAATCTGGCGGCGGCGGAGGCGGATAGACGGCGGCGAGGGATAGATCAG
JMFN030F18+           CGGCGAAGGAGAAATCTGGCGGCGGCGGAGGCGGATAGACGGCGGCGAGGGATAGATCAG
JMFN006A15+           CGGCGAAGGAGAAATCTGGCGGCGGCGGAGGCGGATAGACGGCGGCGAGGGATAGATCAG
                      ____________________________________________________________
consensus             CGGCGAAGGAGAAATCTGGCGGCGGCGGAGGCGGATAGACGGCGGCGAGGGATAGATCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004D07+           GCGGCGGCGGATAGATAGACGGCTGAAATTAAGAATAGAAACATACACTAGGATAGCTGC
JMFN006A13+           GCGGCGGCGGATAGATAGACGGCTGAAATTAAGAATAGAAACATACACTAGGATAGCTGC
JMFN030F18+           GCGGCGGCGGATAGATAGACGGCTGAAATTAAGAATAGAAACATACACTAGGATAGCTGC
JMFN006A15+           GCGGCGGCGGATAGATAGACGGCTGAAATTAAGAATAGAAACATACACTAGGATAGCTGC
                      ____________________________________________________________
consensus             GCGGCGGCGGATAGATAGACGGCTGAAATTAAGAATAGAAACATACACTAGGATAGCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004D07+           ATGGCGCTTCTTTATGAATGTAGATTGATATGA                           
JMFN006A13+           ATGGCGCTTCTTTATGAATGTAGATTGATATGATGATGTTAAGAAATAATCAGGATAAAA
JMFN030F18+           ATGGCGCTTCTTTATGAATGTAGATTGATATGATGATGTTAAGAAATAATC         
JMFN006A15+           ATGGCGCTTCTTTATGAATGTAGATTGATATGATGATGTTAAGAAATAATCAGGATAAAA
                      ____________________________________________________________
consensus             ATGGCGCTTCTTTATGAATGTAGATTGATATGATGATGTTAAGAAATAATCAGGATAAAA