Contig 003293:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF050B17-                               CTTTTTTTTTAAGTCATTTTAGATTTTTATTTCATGGAG
rJMFF028L08-                                                                 TGGAG
                      ____________________________________________________________
consensus                                  CTTTTTTTTTAAGTCATTTTAGATTTTTATTTCATGGAG
 
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rJMFF050B17-          CATTTTGAAAAGTGTTTATAGGAGAGGTACAAATTACTGCCTTCTTTAAATATCAAAAAC
rJMFF028L08-          CATTTTGAAAAGTGTTTATAGGAGAGGTACAAATTACTGCCTTCTTTAAATATCAAAAAC
rJMSF046D04-                  AAAGTGTTTATAGGAGAGGTACAAATTACTGCCTTCTTTAAATATCAAAAAC
                      ____________________________________________________________
consensus             CATTTTGAAAAGTGTTTATAGGAGAGGTACAAATTACTGCCTTCTTTAAATATCAAAAAC
 
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rJMFF050B17-          AATTTTATCCATGCCAGAGTAAAAATGCATGAGCATCTCAATAAGTTCCAGCTCTGGAAA
rJMFF028L08-          AATTTTATCCATGCCAGAGTAAAAATGCATGAGCATCTCAATAAGTTCCAGCTCTGGAAA
rJMSF046D04-          AATTTTATCCATGCCAGAGTAAAAATGCATGAGCATCTCAATAAGTTCCAGCTCTGGAAA
                      ____________________________________________________________
consensus             AATTTTATCCATGCCAGAGTAAAAATGCATGAGCATCTCAATAAGTTCCAGCTCTGGAAA
 
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rJMFF050B17-          TTTTATATTTAGAGAATAAAGGACTGTTTTGATCACAGTTTCATGTCTCTGGCCAAGCAG
rJMFF028L08-          TTTTATATTTAGAGAATAAAGGACTGTTTTGATCACAGTTTCATGTCTCTGGCCAAGCAG
rJMSF046D04-          TTTTATATTTAGAGAATAAAGGACTGTTTTGATCACAGTTTCATGTCTCTGGCCAAGCAG
                      ____________________________________________________________
consensus             TTTTATATTTAGAGAATAAAGGACTGTTTTGATCACAGTTTCATGTCTCTGGCCAAGCAG
 
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rJMFF050B17-          ACCCAGAACTGGACAAAACTCCGCGATAATGATACCACACATCTTCAGCTCAACTTGTTG
rJMFF028L08-          ACCCAGAACTGGACAAAACTCCGCGATAATGATACCACACATCTTCAGCTCAACTTGTTG
rJMSF046D04-          ACCCAGAACTGGACAAAACTCCGCGATAATGATACCACACATCTTCAGCTCAACTTGTTG
                      ____________________________________________________________
consensus             ACCCAGAACTGGACAAAACTCCGCGATAATGATACCACACATCTTCAGCTCAACTTGTTG
 
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rJMFF050B17-          CTTCATTCCCAGGGGAAGAAGGCACGATTGGGCTACGAAGAAGCTTCAACTTCTACTTGA
rJMFF028L08-          CTTCATTCCCAGGGGAAGAAGGCACGATTGGGCTACGAAGAAGCTTCAACTTCTACTTGA
rJMSF046D04-          CTTCATTCCCAGGGGAAGAAGGCACGATTGGGCTACGAAGAAGCTTCAACTTCTACTTGA
                      ____________________________________________________________
consensus             CTTCATTCCCAGGGGAAGAAGGCACGATTGGGCTACGAAGAAGCTTCAACTTCTACTTGA
 
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rJMFF050B17-          ACGTCGTTTCAATCGATTAAGAGCTTGGTTGTCCAGTGCTTTCCTTGATGATGTCTTCCA
rJMFF028L08-          ACGTCGTTTCAATCGATTAAGAGCTTGGTTGTCCAGTGCTTTCCTTGATGATGTCTTCCA
rJMSF046D04-          ACGTCGTTTCAATCGATTAAGAGCTTGGTTGTCCAGTGCTTTCCTTGATGATGTCTTCCA
                      ____________________________________________________________
consensus             ACGTCGTTTCAATCGATTAAGAGCTTGGTTGTCCAGTGCTTTCCTTGATGATGTCTTCCA
 
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rJMFF050B17-          GTTCCTCAATAATTGCATCGTAGCAGAAAAGATATTGTTCCAATGTTTGAACCATCCCAA
rJMFF028L08-          GTTCCTCAATAATTGCATCGTAGCAGAAAAGATATTGTTCCAATGTTTGAACCATCCCAA
rJMSF046D04-          GTTCCTCAATAATTGCATCGTAGCAGAAAAGATATTGTTCCAATGTTTGAACCATCCCAA
                      ____________________________________________________________
consensus             GTTCCTCAATAATTGCATCGTAGCAGAAAAGATATTGTTCCAATGTTTGAACCATCCCAA
 
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rJMFF050B17-          TTCGCTGTGACCTAAATATGGTGATGGTGTTAACAAGATCTAAAGCGGACATATCTCCAA
rJMFF028L08-          TTCGCTGTGACCTAAATATGGTGATGGTGTTAACAAGATCTAAAGCGGACATATCTCCAA
rJMSF046D04-          TTCGCTGTGACCTAAATATGGTGATGGTGTTAACAAGATCTAAAGCGGACATATCTCCAA
                      ____________________________________________________________
consensus             TTCGCTGTGACCTAAATATGGTGATGGTGTTAACAAGATCTAAAGCGGACATATCTCCAA
 
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rJMFF050B17-          GTAGGATCCTTTGGATGGTGTTGTGAATTGCGCAATAGGTTCCAGT              
rJMFF028L08-          GTAGGATCCTTTGGATGGTGTTGTGAATTGCGCAATAGGTTCCAGTTCTACCAATACCCG
rJMSF046D04-          GTAGGATCCTTTGGATGGTGTTGTGAATTGCGCAATAGGTTCCAGTTCTACCAATACCCG
                      ____________________________________________________________
consensus             GTAGGATCCTTTGGATGGTGTTGTGAATTGCGCAATAGGTTCCAGTTCTACCAATACCCG
 
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rJMFF028L08-          CACTGCAGTGCACCACAATTGGCCCAAGACTAGGTGGCAGGGTATGTAAGCGCTTCACAA
rJMSF046D04-          CACTGCAGTGCACCACAATTGGCCCAAGACTAGGTGGCAGGGTATGTAAGCGCTTCACAA
                      ____________________________________________________________
consensus             CACTGCAGTGCACCACAATTGGCCCAAGACTAGGTGGCAGGGTATGTAAGCGCTTCACAA
 
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rJMFF028L08-          TTTCACGAGTAGCAAGAGTGTCCTTCGGAACTCCATGATCAGGCCATTCAGCATATTGAA
rJMSF046D04-          TTTCACGAGTAGCAAGAGTGTCCTTCGGAACTCCATGATCAGGCCATTCAGCATATTGAA
                      ____________________________________________________________
consensus             TTTCACGAGTAGCAAGAGTGTCCTTCGGAACTCCATGATCAGGCCATTCAGCATATTGAA
 
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rJMFF028L08-          AGTGTAA                                                     
rJMSF046D04-          AGTGTAAGACAGACAAAGGTGGTTCTTCGGACTCTTTGTAGCTAACCTCCAAGCAACGCA
JMSF046D04+                                                            CAAGCAACGCA
                      ____________________________________________________________
consensus             AGTGTAAGACAGACAAAGGTGGTTCTTCGGACTCTTTGTAGCTAACCTCCAAGCAACGCA
 
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rJMSF046D04-          ATATTAAGGAAGTATCTGTTGTTTTTATCCATTTGGTGGTGATGCATATATTCCC     
JMSF046D04+           ATATTAAGGAAGTATCTGTTGTTTTTATCCATTTTGTGGTGATGCATATATTCCCAAATT
                      ____________________________________________________________
consensus             ATATTAAGGAAGTATCTGTTGTTTTTATCCATTTTGTGGTGATGCATATATTCCCAAATT
 
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JMSF046D04+           CTCTAACGCCATCCTCCGCCTGAAAATAGTCTCCACACTTCACCGTCTTGTAATTGTCAA
                      ____________________________________________________________
consensus             CTCTAACGCCATCCTCCGCCTGAAAATAGTCTCCACACTTCACCGTCTTGTAATTGTCAA
 
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JMFF028L08+                                                              CCCAGAAGT
JMSF046D04+           CCAGTCGTGTAAGCATTACAATTGCAGGACAACGATTCTGGATTACCATTTCCCAGAAGT
JMFF050B17+                              AATTGCAGGACAACGATTCTGGATTACCATTCCCCAGAAGT
                      ____________________________________________________________
consensus             CCAGTCGTGTAAGCATTACAATTGCAGGACAACGATTCTGGATTACCATTTCCCAGAAGT
 
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JMFF028L08+           CCTCGAAGGTGTTTGGCAGCGGACCTTGTGTCGCAATAAAGCGAGATACATGTTCAGAAA
JMSF046D04+           CCTCGAAGGTGTTTGGCAGCGGACCTTGTGTCGCAATAAAGCGAGATACATGTTCAGAAA
JMFF050B17+           CCTCGAAGGTGTTGNGCAGCGGACCTTGTGTCGCAATAAAGCGAGATACATGTTCAGAAA
                      ____________________________________________________________
consensus             CCTCGAAGGTGTTTGGCAGCGGACCTTGTGTCGCAATAAAGCGAGATACATGTTCAGAAA
 
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JMFF028L08+           CTGTGATCAAGCCTGCGTTGATATATCCCCTAGCTGATTGTCTGTAGTCTTTACATGGGT
JMSF046D04+           CTGTGATCAAGCTTGCGTTGATATATCCCCTAGCTGATTGTCTGTAGTCTTTACATGGGT
JMFF050B17+           CTGTGATCAAGCTTGCGTTGATATATCCCCTAGCTGATTGTCTGTAGTCTTTACATGGGT
                      ____________________________________________________________
consensus             CTGTGATCAAGCTTGCGTTGATATATCCCCTAGCTGATTGTCTGTAGTCTTTACATGGGT
 
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JMFF028L08+           TCAAAACAACCCTGTTACTGTCAAATGGCAATACATCAGTATAACGGTTTTTGCTGATGT
JMSF046D04+           TCAAAACAACCCTGTTACTGTCAAATGGCAATACATCAGTATAACGGTTTTTGCTGATGT
JMFF050B17+           TCAAAACAACCCTGTTACTGTCAAATGGCAATACATCAGTATAACGGTTTTTGCTGATGT
                      ____________________________________________________________
consensus             TCAAAACAACCCTGTTACTGTCAAATGGCAATACATCAGTATAACGGTTTTTGCTGATGT
 
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JMFF028L08+           TTATGCTATCCAGAGCTACTAAGCATCTACTCCTCATATCTGAAGCCCTCATCCTATTTG
JMSF046D04+           TTATGCTATCCAGAGCTACTAAGCATCTACTCCTCATATCTGAAGCCCTCATCCTATTTG
JMFF050B17+           TTATGCTATCCAGAGCTACTAAGCATCTACTCCTCATATCTGAAGCCCTCATCCTATTTG
                      ____________________________________________________________
consensus             TTATGCTATCCAGAGCTACTAAGCATCTACTCCTCATATCTGAAGCCCTCATCCTATTTG
 
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JMFF028L08+           CCTGTAAGGTACCGAACTCCTGGCGGATTTTTTCGGGAGCTTGAAACCTCTTCTCTTTGA
JMSF046D04+           CCTGTAAGGTACCGAACTCCTGGCGGATTTTTTCGGGAGCTTGAAACCTCTTCTCTTTGA
JMFF050B17+           CCTGTAAGGTACCGAACTCCTGGCGGATTTTTTCGGGAGCTTGAAACCTCTTCTCTTTGA
                      ____________________________________________________________
consensus             CCTGTAAGGTACCGAACTCCTGGCGGATTTTTTCGGGAGCTTGAAACCTCTTCTCTTTGA
 
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JMFF028L08+           GTACCTTGAGTGCTTCGGAGCAGTACCGAAGCTGATCGGACGACAGAACGAGCCTCGGCG
JMSF046D04+           GTACCTTGAGTGCTTCGGAGCAGTACCGAAGCTGATCGGACGACAGAACGAGCCTCGGCG
JMFF050B17+           GTACCTTGAGTGCTTCGGAGCAGTACCGAAGCTGATCGGACGACAGAACGAGCCTCGGCG
                      ____________________________________________________________
consensus             GTACCTTGAGTGCTTCGGAGCAGTACCGAAGCTGATCGGACGACAGAACGAGCCTCGGCG
 
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JMFF028L08+           GCTGCGAATCATAAGAGAAATCGAAAGGCTGGGCAGCCTCAGCGGACGACGCAGCGGTTC
JMSF046D04+           GCTGCGAATCATAAGAGAAATCGAAAGGCTGGGCAGCCTCAGCGGACGACGCAGCGGTTC
JMFF050B17+           GCTGCGAATCATAAGAGAAATCGAAAGGCTGGGCAGCCTCAGCGGACGACGCAGCGGTTC
                      ____________________________________________________________
consensus             GCTGCGAATCATAAGAGAAATCGAAAGGCTGGGCAGCCTCAGCGGACGACGCAGCGGTTC
 
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JMFF028L08+           CGGTGACGGAGGAGGAAAGAGACTTTCCGGCCGCGGCCATCGCCGATCTCCGGCTGCGAG
JMSF046D04+           CGGTGACGGAGGAGGAAAGAGACTTTCCGGCCGCGGCCATCGCCGATCTCCGGCTGCGAG
JMFF050B17+           CGGTGACGGAGGAGGAAAGAGACTTTCCGGCCGCGGCCATCGCCGATCTCCGGCTGCGAG
                      ____________________________________________________________
consensus             CGGTGACGGAGGAGGAAAGAGACTTTCCGGCCGCGGCCATCGCCGATCTCCGGCTGCGAG
 
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JMFF028L08+           TCCGAGTTGAAATGGCGCTACCCGTGTTGTTGGGTGTGGAAGTGGAAGAGTAGTTGGTGC
JMSF046D04+           TCCGAGTTGAAATGGCGCTACCCGTGTTGTTGGGTGTGGAAGTGGAAGAGTAGTTGGTGC
JMFF050B17+           TCCGAGTTGAAATGGCGCTACCCGTGTTGTTGGGTGTGGAAGTGGAAGAGTAGTTGGTGC
                      ____________________________________________________________
consensus             TCCGAGTTGAAATGGCGCTACCCGTGTTGTTGGGTGTGGAAGTGGAAGAGTAGTTGGTGC
 
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JMFF028L08+           GCCGTTGAGTTTACGCTCAGTCCAAAAGTGAAGTCTCC                      
JMSF046D04+           GCCGTTGAGTTTACGCTCAGTCCAAAAGTGAAGTCTCC                      
JMFF050B17+           GCCGTTGAGTTTACGCTCAGTCCAAAAGTGAAGTCTCCAACCAAAATTATTAATTTCCGG
                      ____________________________________________________________
consensus             GCCGTTGAGTTTACGCTCAGTCCAAAAGTGAAGTCTCCAACCAAAATTATTAATTTCCGG