Contig 003289:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006C15Sequence560003289 (7)ref|XP_009783613.1|5e-92PREDICTED: protein LOL2-like isoform X1 [Nicotiana sylvestris]
JMFF040L23Sequence573003289 (7)ref|XP_009783613.1|5e-93PREDICTED: protein LOL2-like isoform X1 [Nicotiana sylvestris]628003289 (7)ref|XP_009783614.1|8e-27PREDICTED: protein LSD1-like isoform X2 [Nicotiana sylvestris] ref|XP_009783615.
JMFF048L10Sequence479003289 (7)ref|XP_009597146.1|2e-20PREDICTED: protein LOL1-like [Nicotiana tomentosiformis]320015981
JMFN037M17Sequence502003289 (7)ref|XP_009783614.1|7e-16PREDICTED: protein LSD1-like isoform X2 [Nicotiana sylvestris] ref|XP_009783615.
JMFN037O15Sequence592003289 (7)ref|XP_009783614.1|4e-48PREDICTED: protein LSD1-like isoform X2 [Nicotiana sylvestris] ref|XP_009783615.
JMSF045O10Sequence653000714 (77)ref|XP_011085268.1|1e-124PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like [Sesamum indi289003289 (7)ref|XP_009783614.1|2e-04PREDICTED: protein LSD1-like isoform X2 [Nicotiana sylvestris] ref|XP_009783615.

Alignment

This contig is upended


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JMFN037M17+                                                  CATCATGAAAATGTAATATCC
rJMFF040L23-              TATGTTCTTCCACTATATAATAGAGGGCANNATCNCATCATGAANATGTAATATCC
                      ____________________________________________________________
consensus                 TATGTTCTTCCACTATATAATAGAGGGCANNATCNCATCATGAAAATGTAATATCC
 
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JMFN037M17+           GTAGCCATAATTCCGACGATGAACAATCAAACAAATTGCTCAAGTCCCAAGCGCTCAATC
rJMFF040L23-          GTAGCCATAATTCCGACGATGAACAATCAAACNANTTGCTCAAGTCCCAAGCGCTCAATC
JMFN037O15+                                               TGCTCAAGTCCCAAGCGCTCAATC
                      ____________________________________________________________
consensus             GTAGCCATAATTCCGACGATGAACAATCAAACAAATTGCTCAAGTCCCAAGCGCTCAATC
 
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JMFN037M17+           ATTTGGAAGATGTGAACTCGGTTCAAATTTCACCCAAGAATCTTCGTAGATGAATTGCAT
rJMFF040L23-          ATTTGGAAGATGTGAACTCGGTTCANATTTCACCCAANAATCTTCGNAGATGAATTGCAT
rJMSF045O10-                                                         AGATGAATTGCAT
JMFN037O15+           ATTTGGAAGATGTGAACTCGGTTCAAATTTCACCCAAGAATCTTCGTAGATGAATTGCAT
                      ____________________________________________________________
consensus             ATTTGGAAGATGTGAACTCGGTTCAAATTTCACCCAAGAATCTTCGTAGATGAATTGCAT
 
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JMFN037M17+           GCTTTATAATATTCACCTACAAATTATTACATATATAATATGTGCCATCCATCTCTACAC
rJMFF040L23-          GCTTTATAATATTANACTACNAATTATTACNTATATAATATGTACCATCCATCTCTACAC
rJMSF045O10-          GCTTTATAATATTAAACTACAAATNATTACNTATATAATATGTACCATCCATCTCTANAC
JMFN037O15+           GCTTTATAATATTAAACTACAAATTATTACATATATAATATGTACCATCCATCTCTACAC
                      ____________________________________________________________
consensus             GCTTTATAATATTAAACTACAAATTATTACATATATAATATGTACCATCCATCTCTACAC
 
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JMFN037M17+           TCATCTCTCCAATAAAG-CAAGCCACATTCCCAAACGCCATCACTAATGAGACCAACAGG
rJMFF040L23-          TCATCTCTCCAATAAAG-CAAGCCNCATTCCCAAACGCCATCACTAATGANACCAACAGG
rJMSF045O10-          TCGTCTCTCCAANAAAGACNAGCCACATTCCCAAACGCCATCACTANTGAGACCAACNGG
JMFN037O15+           TCATCTCTCCAATAAAG-CAAGCCACATTCCCAAACGCCATCACTAATGAGACCAACAGG
                      ____________________________________________________________
consensus             TCATCTCTCCAATAAAG-CAAGCCACATTCCCAAACGCCATCACTAATGAGACCAACAGG
 
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JMFN037M17+           TGGAATTCTTGTTTCGTCGAAAGGTCTATGTTGTCGTTGTCACACCAACAACAACATTGC
rJMFF040L23-          TGGAATTCTTGTTTCGTCGANAGGTCTATGTTGTCGTTGTCACACCAACAACAACATTGC
rJMSF045O10-          TGGAATTCTTGGTTCGTCAAAAGGNCTATGTTGTCNTTGTCACACCNACAACAACATTGC
JMFN037O15+           TGGAATTCTTGTTTCGTCGAAAGGTCTATGTTGTCGTTGTCACACCAACAACAACATTGC
JMFF040L23+                                                TGTCACACCAACAACAACATTGC
JMFF006C15+                                                             ACAACATTGC
                      ____________________________________________________________
consensus             TGGAATTCTTGTTTCGTCGAAAGGTCTATGTTGTCGTTGTCACACCAACAACAACATTGC
 
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JMFN037M17+           TCACCAGCTTCCCACTTTCATCAACAGACATGGGGTTTTGAACAACAACAGTTTGATTTT
rJMFF040L23-          TCACCANCTTCCCACTTTCATCAACAGACATGGGGTTTTGAACAACAACAGTTTGATTCT
rJMSF045O10-          TCACCAGCTTCCCACTTTCATCAANAGACATGGGGTTTTGAACAACTACAGTTNGATTCT
JMFN037O15+           TCACCAGCTTCCCACTTTCATCAACAGACATGGGGTTTTGAACAACAACAGTTTGATTCT
JMFF040L23+           TCACCAGCTTCCCACTTTCATCAACAGACATGGGGTTTTGAACAACAACAGTTTGATTCT
JMFF006C15+           TCACCAGCTTCCCACTTTCATCAACAGACATGGGGTTTTGAACAACAACAGTTTGATTNT
                      ____________________________________________________________
consensus             TCACCAGCTTCCCACTTTCATCAACAGACATGGGGTTTTGAACAACAACAGTTTGATTCT
 
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JMFN037M17+           GAGAACGGGGTGCAGCTGTGGAAGAAGGTGGGGCAGATGAAGATGTAGCAGATCCATTAG
rJMFF040L23-          GANAACGGGGTGCAGCTGTGGAAGAAGGTGGGGCAGATGAAGATGTAGCANATCCATTAG
rJMSF045O10-          GAGAACGGNGTGC                                               
JMFN037O15+           GAGAACGGGGTGCAGCTGTGGAAGAAGGTGGGGCAGATGAAGATGTAGCAGATCCATTAG
JMFF040L23+           GAGAACGGGGTGCAGCTGTGGAAGAAGGTGGGGCAGATGAAGATGTAGCAGATCCATTAG
JMFF006C15+           GAGAACGGGGTGCAGCTGTGGAAGAAGGTGGGGCAGATGAAGATGTAGCAGATCCATTAG
                      ____________________________________________________________
consensus             GAGAACGGGGTGCAGCTGTGGAAGAAGGTGGGGCAGATGAAGATGTAGCAGATCCATTAG
 
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JMFN037M17+           GTGGGTGGGAAGGAATGGGCACTCTCGCATCTCCCGCATTAACATTGGTGATGAAGTGAC
rJMFF040L23-          GTGGGTGGGAANGAATGGGCACTCTCNCATCTCCCGCATTAACATTGGTGATGAANTGAC
JMFN037O15+           GTGGGTGGGAAGGAATGGGCACTCTCGCATCTCCCGCATTAACATTGGTGATGAAGTGAC
JMFF040L23+           GTGGGTGGGAAGGAATGGGCACTCTCGCATCTCCCGCATTAACATTGGTGATGAAGTGAC
JMFF006C15+           GTGGGTGGGAAGGAATGGGCACTCTCGCATCTCCCGCATTAACATTGGTGATGAAGTGAC
                      ____________________________________________________________
consensus             GTGGGTGGGAAGGAATGGGCACTCTCGCATCTCCCGCATTAACATTGGTGATGAAGTGAC
 
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JMFN037M17+           AT                                                          
rJMFF040L23-          ATACTGCACACTTAACTGATGGAGCTCCNCATGGATACATCANCATTGTACGACAGNTCC
JMFN037O15+           ATACTGCACACTTAACTGATGGAGCTCCACATGGATACATCAGCATTGTACGACAGTTCC
JMFF040L23+           ATACTGCACACTTAACTGATGGAGCTCCACATGGATACATCAGCATTGTACGACAGTTCC
JMFF006C15+           ATACTGCACACTTAACTGATGGAGCTCCACATGGATACATCAGCATTGTACGACAGTTCC
                      ____________________________________________________________
consensus             ATACTGCACACTTAACTGATGGAGCTCCACATGGATACATCAGCATTGTACGACAGTTCC
 
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rJMFF040L23-          CACNATTGATATGAGCAAACTGATTTGGTCCAG                           
JMFN037O15+           CACAATTGATATGAGCAAACTGATTTGGTCCAGGCACAAGGTTCACCGTATGACAGCAGG
JMFF040L23+           CACAATTGATATGAGCAAACTGATTTGGTCCAGGCACAAGGTTCACCGTATGACAGCAGG
JMFF006C15+           CACAATTGATATGAGCAAACTGATTTGGTCCAGGCACAAGGTTCACCGTATGACAGCAGG
                      ____________________________________________________________
consensus             CACAATTGATATGAGCAAACTGATTTGGTCCAGGCACAAGGTTCACCGTATGACAGCAGG
 
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JMFN037O15+           AGCATCTTA                                                   
JMFF040L23+           AGCATCTTACACTGGTTGCTCCCCGTGGATGCATCAGAAGTGTGCGGCAACCCCCACATA
JMFF006C15+           AGCATCTTACACTGGTTGCTCCCCGTGGATGCATCAGAAGTGTGCGGCAACCCCCACATA
                      ____________________________________________________________
consensus             AGCATCTTACACTGGTTGCTCCCCGTGGATGCATCAGAAGTGTGCGGCAACCCCCACATA
 
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JMFF040L23+           TCAGTTGAGCCATCTGACCCATCTCCATTCCAGGAGGCGGCACAGGAGTGAGGGCATTGC
JMFF006C15+           TCAGTTGAGCCATCTGACCCATCTCCATTCCAGGAGGCGGCACAGGAGTGAGGGCATTGC
JMFF048L10+                             CCATTTCCATTGCAGGAGGCGGGACAGGAGTGAGGGCATTGC
                      ____________________________________________________________
consensus             TCAGTTGAGCCATCTGACCCATCTCCATTCCAGGAGGCGGCACAGGAGTGAGGGCATTGC
 
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JMFF040L23+           ACACTGCACAGCAGACATTTGTAGCTCCTCTGGGATAAAGAAGAATAGTCCTACACCCAC
JMFF006C15+           ACACTGCACAGCAGACATTTGTAGCTCCTCTGGGATAAAGAAGAATAGTCCTACACCCAC
JMFF048L10+           AGACTGCACAGCAGACATTTGAGGCTCCCCTGGGATAAAGAAGAATAGTCCTACACCCGT
                      ____________________________________________________________
consensus             ACACTGCACAGCAGACATTTGTAGCTCCTCTGGGATAAAGAAGAATAGTCCTACACCCAC
 
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JMFF040L23+           TGCAAACCAACTGGCTCTGCATATCA                                  
JMFF006C15+           TGCAAACCAACTGGCTCTGCATATCA                                  
JMFF048L10+           TACAAACCACCTGGCTCTGCATATCACTGATGAAGGAGCAAATCTGAAGCCCAAGAGACA
                      ____________________________________________________________
consensus             TGCAAACCAACTGGCTCTGCATATCACTGATGAAGGAGCAAATCTGAAGCCCAAGAGACA
 
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JMFF048L10+           AGATTGATCAGATAAGCAAATTACAGAGAAACCGACGAACGATACTGCGATTCCGAACGG
                      ____________________________________________________________
consensus             AGATTGATCAGATAAGCAAATTACAGAGAAACCGACGAACGATACTGCGATTCCGAACGG
 
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JMFF048L10+           AAATCTTATCCGAGTTTCCTTTATTAAGAATAATAAAACAAATAGAAAGAAGAATATTCT
                      ____________________________________________________________
consensus             AAATCTTATCCGAGTTTCCTTTATTAAGAATAATAAAACAAATAGAAAGAAGAATATTCT
 
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JMFF048L10+           TCTCCGCTTAACACGAATTCGCGTTCTTTGACTTTCAGGTAAGGGAAGGGCTTTGAATTC
                      ____________________________________________________________
consensus             TCTCCGCTTAACACGAATTCGCGTTCTTTGACTTTCAGGTAAGGGAAGGGCTTTGAATTC
 
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JMFF048L10+           AACGATGAAGAGACATAATTTATCCAATTGAATTGATGGAAACTCGTGATGAAGATTTGT
                      ____________________________________________________________
consensus             AACGATGAAGAGACATAATTTATCCAATTGAATTGATGGAAACTCGTGATGAAGATTTGT
 
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JMFF048L10+           AGCGTTTTCCTTCCTGGAGGCTACCGAGCACACAGAAGATACGACCCGAATTCGACAATC
                      ____________________________________________________________
consensus             AGCGTTTTCCTTCCTGGAGGCTACCGAGCACACAGAAGATACGACCCGAATTCGACAATC