Contig 003288:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF021C19+                                                                    CCG
                      ____________________________________________________________
consensus                                                                      CCG
 
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JMSF021C19+           GGGTATGCATAAAGATACCAATAATACTTTCCTTTCAAGTAAATATCATAATCAGGCCTT
                      ____________________________________________________________
consensus             GGGTATGCATAAAGATACCAATAATACTTTCCTTTCAAGTAAATATCATAATCAGGCCTT
 
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JMSF021C19+           GACCACAAAGGATCGAAGTGAGGATATGGATTAATTTCTCTCCAACCCCATAAATTACCA
JMSF048J13+                                                   TCCAAACCCACAAATTACCA
                      ____________________________________________________________
consensus             GACCACAAAGGATCGAAGTGAGGATATGGATTAATTTCTCTCCAACCCCATAAATTACCA
 
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JMSF021C19+           ACCTGGCTACAAACCATTACCTTGTATTCACATCCATCT---GCACCCCAAACAATGACA
JMSF048J13+           ACCTGGCTGCAAACCATTACCTNGTATACACATCCCTCTAACGAACTCCAAACAATGACA
                      ____________________________________________________________
consensus             ACCTGGCTGCAAACCATTACCTTGTATTCACATCCCTCTAACGCACTCCAAACAATGACA
 
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JMSF021C19+           ACCTTCCCTGTCATGTTGTTACAAAACCCAAATCCAATCATTTCTTCCAACCGATCTAGA
JMSF048J13+           ACCTTCCCGGCCATGTTGTTACAAAACCCAAATCCAATCACTTCTTTCAACCGATCTAGA
                      ____________________________________________________________
consensus             ACCTTCCCTGTCATGTTGTTACAAAACCCAAATCCAATCATTTCTTTCAACCGATCTAGA
 
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JMSF021C19+           GGAAAATTGGGAGGTGGGGAGATAGGTGGTAACGCCTTAATTTCACGGGTGGATGGGTTC
JMSF048J13+           GGAATATTGTGAGGTGGGGAGATAGGTGGTAATGCCTTAATTTCCCGGGTGGATGGGTTC
                      ____________________________________________________________
consensus             GGAATATTGTGAGGTGGGGAGATAGGTGGTAATGCCTTAATTTCCCGGGTGGATGGGTTC
 
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JMSF021C19+           CATAGCAAGATATTCATAGTTCCATCAGTCCTAAGGGTAATTAGGCATAATATACCATCA
JMSF048J13+           CATATCAAGATATCCCTAGTTCCATCAATCCTACCGGCAATTAGGCATAATATACCATCA
                      ____________________________________________________________
consensus             CATATCAAGATATTCCTAGTTCCATCAGTCCTACGGGTAATTAGGCATAATATACCATCA
 
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JMSF021C19+           ATACACTTTACCTTCCTTATCCATGAACTTGGCAGGGCTAGGTCTACGCATCCAATCTCA
JMSF048J13+           ATACACTTTACATTCACTATACATGAACTTGGCAGGGCTAGGTTTACACATCCAATTTCA
                      ____________________________________________________________
consensus             ATACACTTTACCTTCCTTATCCATGAACTTGGCAGGGCTAGGTTTACGCATCCAATTTCA
 
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JMSF021C19+           TCAGAATCCAATTCTTTGTAAACTAAACCAAATACTTCCTCACGCCAGGGCGGAAATTCT
JMSF048J13+           TCAGAATCCAATTCTTTGTAAACTAATCCAAATACTTCCTCACGCCAGGGCGGATATTCC
                      ____________________________________________________________
consensus             TCAGAATCCAATTCTTTGTAAACTAATCCAAATACTTCCTCACGCCAGGGCGGATATTCT
 
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JMSF021C19+           CTAAGCCCAATCTCACGCTGGAAAATGACATAGTCTCTACTCACCCGACTAATTTCATAG
JMSF048J13+           CTGAGCCCAATCTCACGCTGGAAAATGACATAATCTCTACTCACCCGACTAATTTCATAG
                      ____________________________________________________________
consensus             CTGAGCCCAATCTCACGCTGGAAAATGACATAGTCTCTACTCACCCGACTAATTTCATAG
 
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JMSF021C19+           TGCTTGTGTTGGAAATGATTATCACTTTTTATTAAAAAATAGAAAAATTTACACACAGAC
JMSF048J13+           TGCTTGTGTTGGAAATGATTATCACTTTTTATTAAAATATAGAAGAATTTACACACAGAC
                      ____________________________________________________________
consensus             TGCTTGTGTTGGAAATGATTATCACTTTTTATTAAAATATAGAAGAATTTACACACAGAC
 
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JMSF021C19+           TTAAATCGCATAAGAGACTTTACCGGCAATCTAGCCAAAATCTCGATCAGCAGCTCCCTT
JMSF048J13+           TTAAATCGCATAAGAGACTTTACCGACAATCTCGCCAAAATCTCGATCAGGAGCTCCCTT
JMFF048J24+                                      AATCTCGCCAAAATCTCGATCAGGAGCTCCGTT
                      ____________________________________________________________
consensus             TTAAATCGCATAAGAGACTTTACCGGCAATCTCGCCAAAATCTCGATCAGGAGCTCCCTT
 
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JMSF021C19+           GGTAATTTGCAATTCTCCATTTTCTT                                  
JMSF048J13+           GGAAATTTGCAGTTCTCCATTTTC------TTGAATGAACAGCTTTGTTAGGGTAAAAAG
JMFF048J24+           GGAAATTTGCAGTTCGTCATTTTCTTTCGATTGAATGAATAGCTTTGTTAGGGTAAAAAG
                      ____________________________________________________________
consensus             GGAAATTTGCAGTTCTCCATTTTCTTTCGATTGAATGAATAGCTTTGTTAGGGTAAAAAG
 
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JMSF048J13+           GAAACGGTGGTGATTGCAATCTGGTAACCTGGACTACGTAAATGTGGGCTAGCCTAAGCT
JMFF048J24+           GAAACGGTGGTGATTGCAATCTGGTAACCTGGACTACGTAAATGTGGGCTAGCCTAAGCT
                      ____________________________________________________________
consensus             GAAACGGTGGTGATTGCAATCTGGTAACCTGGACTACGTAAATGTGGGCTAGCCTAAGCT
 
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JMSF048J13+           TGTTCTCGGAATAAACCACGACT                                     
JMFF048J24+           TGATCTCGGAATAAACCACGACTAATCGGCTCAAAGAAAAATTGTCTTGAAATTTAACCT
                      ____________________________________________________________
consensus             TGTTCTCGGAATAAACCACGACTAATCGGCTCAAAGAAAAATTGTCTTGAAATTTAACCT