| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039J08 | Sequence | 478 | 003287 (10) | ref|XP_010485236.1| | 1e-82 | PREDICTED: actin-4-like [Camelina sativa] | 775 | 003287 (10) | dbj|BAF68887.1| | 1e-141 | actin 3, partial [Torenia fournieri] |
| JMFF042J07 | Sequence | 633 | 003287 (10) | gb|AFK41489.1| | 2e-121 | unknown [Medicago truncatula] | |||||
| JMFF048J05 | Sequence | 413 | 003287 (10) | tpg|DAA51874.1| | 5e-63 | TPA: putative actin family protein isoform 1 [Zea mays] tpg|DAA51875.1| TPA: put | 344 | 003287 (10) | dbj|BAB60900.1| | 1e-31 | actin [Ipomoea nil] |
| JMSF021H02 | Sequence | 698 | 003287 (10) | gb|EPS69959.1| | 5e-136 | actin [Genlisea aurea] | 746 | 003287 (10) | ref|XP_009621805.1| | 4e-111 | PREDICTED: actin-like [Nicotiana tomentosiformis] ref|XP_009780859.1| PREDICTED: |
| JMSF036M11 | Sequence | 683 | 003287 (10) | gb|EPS69959.1| | 1e-137 | actin [Genlisea aurea] | 712 | 003287 (10) | dbj|BAF68887.1| | 5e-138 | actin 3, partial [Torenia fournieri] |
| JMSF039F21 | Sequence | 666 | 003287 (10) | gb|KHG29096.1| | 1e-135 | Actin [Gossypium arboreum] | 872 | 015117 | ref|XP_004241231.1| | 4e-131 | PREDICTED: actin-82 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF036M11- ACATGGTGAACAACAAATACAGAAAATCAACGGTAGAAGAGAATATAAGGCGGTA
rJMSF021H02- GTGAACAACAAATACAGAAAATCAACGGTAGAAGAGAATATAAGGCGGTA
____________________________________________________________
consensus ACATGGTGAACAACAAATACAGAAAATCAACGGTAGAAGAGAATATAAGGCGGTA
. : . : . : . : . : . :
rJMSF036M11- ATCTGCAACCTGACTCGATAGAAGAAGCCCATTCCATCATCAAAAACCATTTTTCTTCGA
rJMSF021H02- ATCTGCAACCTGACTCGATAGAAGAAGCCCATTCCATCATCAAAAACCATTTTTCTTCGA
____________________________________________________________
consensus ATCTGCAACCTGACTCGATAGAAGAAGCCCATTCCATCATCAAAAACCATTTTTCTTCGA
. : . : . : . : . : . :
rJMSF036M11- GAATTAGAAGCACTTCCTGTGAACAATTGATGGGCCAGACTCATCGTACTCTGCCTTAGC
rJMFF039J08- AATTAGAAGCACTTCCTGTGAACAATTGATGGGCCAGACTCATCGTACTCTGCCTTAGC
rJMFF048J05- AATTAGAAGCACTTCCTGTGAACAATTGATGGGCCAGACTCATCGTACTCTGCCTTAGC
rJMSF021H02- GAATTAGAAGCACTTCCTGTGAACAATTGATGGGCCAGACTCATCGTACTCTGCCTTAGC
____________________________________________________________
consensus GAATTAGAAGCACTTCCTGTGAACAATTGATGGGCCAGACTCATCGTACTCTGCCTTAGC
. : . : . : . : . : . :
rJMSF036M11- AATCCACATCTGCTGGAATGTGCTAAGGGAAGCCAAGATGGAGCCGCCAATCCAGACGCT
rJMFF039J08- AATCCACATCTGCTGGAATGTGCTAAGGGAAGCCAAGATGGAGCCGCCAATCCAGACGCT
rJMFF048J05- AATCCACATCTGCTGGAATGTGCTAAGGGAAGCCAAGATGGAGCCGCCAATCCAGACGCT
rJMSF021H02- AATCCACATCTGCTGGAATGTGCTAAGGGAAGCCAAGATGGAGCCGCCAATCCAGACGCT
____________________________________________________________
consensus AATCCACATCTGCTGGAATGTGCTAAGGGAAGCCAAGATGGAGCCGCCAATCCAGACGCT
. : . : . : . : . : . :
rJMSF036M11- ATATTTCCTCTCGGGCGGTGCCACCACCTTGATCTTCATGCTACTCGGGGCCAACGCCGT
rJMFF039J08- ATATTTCCTCTCGGGCGGTGCCACCACCTTGATCTTCATGCTACTCGGGGCCAACGCCGT
rJMFF048J05- ATATTTCCTCTCGGGCGGTGCCACCACCTTGATCTTCATGCTACTCGGGGCCAACG
rJMSF021H02- ATATTTCCTCTCGGGCGGTGCCACCACCTTGATCTTCATGCTACTCGGGGCCAACGCCGT
____________________________________________________________
consensus ATATTTCCTCTCGGGCGGTGCCACCACCTTGATCTTCATGCTACTCGGGGCCAACGCCGT
. : . : . : . : . : . :
rJMSF036M11- AATCTCCTTGCTCATTCTATCAGCGATACCCGGGAACATGGTGGAACCACCGCCAAGCAC
rJMFF039J08- AATCTCCTTGCTCATTCTATCAGCGATACCCGGGAACATGGTGGAACCACCGCTAAGCAC
rJMSF021H02- AATCTCCTTGCTCATTCTATCAGCGATACCCGGGAACATGGTGGAACCACCGC-AAGCAC
____________________________________________________________
consensus AATCTCCTTGCTCATTCTATCAGCGATACCCGGGAACATGGTGGAACCACCGCTAAGCAC
. : . : . : . : . : . :
rJMSF036M11- TATGTTCCCATACAGGTCCTTCCTAATATCGACATCACATTTCATGATAGAGTTGTACGT
rJMFF039J08- TATGTTCCCATACAGGTCCTTCCTAATATCGACATCACATTTCATGATAGAGTTGTACGT
rJMSF021H02- TATGTTCCCATACAGGTCCTTCCTAATATCGACATCACATTTCATGATAGAGTTGTACGT
____________________________________________________________
consensus TATGTTCCCATACAGGTCCTTCCTAATATCGACATCACATTTCATGATAGAGTTGTACGT
. : . : . : . : . : . :
rJMSF036M11- GGTCTCGTGGATTCCCGCTGCTTCCATCCCAATCATCGAAGGCTGGAAAAGCACCTCGGG
rJMFF039J08- GGTCTCGTGGATTCCCGCTGCTTCCATCCCAATCATCGAAGGCTGGAAAAGCACCTCGGG
rJMSF021H02- GGTCTCGTGGATTCCCGCTGCTTCCATCCCAATCATCGAAGGCTGGAAAAGCACCTCGGG
____________________________________________________________
consensus GGTCTCGTGGATTCCCGCTGCTTCCATCCCAATCATCGAAGGCTGGAAAAGCACCTCGGG
. : . : . : . : . : . :
rJMSF036M11- GCATCGGAAACGCTCGGCACCTATGGTGATCACTTGCCCATCGGGGAGCTCGTAGCTTTT
rJMFF039J08- GCATCGGAAGCGCTCGGCACCTATGGTGATCACTTGCCCATCGGGGAGCTCGTAGCTTTT
rJMSF021H02- GCATCGGAAACGCTCGGCACCTATGGTGATCACTTGCCCATCGGGGAGCTCGTAGCTTTT
____________________________________________________________
consensus GCATCGGAAACGCTCGGCACCTATGGTGATCACTTGCCCATCGGGGAGCTCGTAGCTTTT
. : . : . : . : . : . :
rJMSF036M11- CTCTACAGTCGAGCTAGTCCTTGAAGTCTCGAGCTCTTGCTCATAGTCGAGCGCTATGTA
rJMFF039J08- CTCTACAGTCGAGCTAGTCCTTGAAGTCTCGAGCTCTTGCTCATAGTCGAGCGCTATGTA
rJMSF021H02- CTCTACAGTCGAGCTAGTCCTTGAAGTCTCGAGCTCTTGCTCATAGTCGAGCGCTATGTA
____________________________________________________________
consensus CTCTACAGTCGAGCTAGTCCTTGAAGTCTCGAGCTCTTGCTCATAGTCGAGCGCTATGTA
. : . : . : . : . : . :
rJMSF036M11- AGCAAGCTTTTCTTTCACGTCTCTCACAATTTCCCGCTCGGCTGTGGTGGTGAAAGAGTA
rJMFF039J08- AGCAAGCTTTTCTTTCACGTCTCTCACAATTTCCCGCTCGGCTGTGGTGGTGAAAGAGTA
rJMSF021H02- AGCAAGCTTTTCTTTCACGTCTCTCACAATTTCCCGCTCGGCTGTGGTGGTGAAAGAGTA
____________________________________________________________
consensus AGCAAGCTTTTCTTTCACGTCTCTCACAATTTCCCGCTCGGCTGTGGTGGTGAAAGAGTA
. : . : . : . : . : . :
rJMSF036M11- GCCACGCTCCGTGAGGATTTTCATCAAATGATCGGTCAAATCCCGGCCAGCCAAATC
rJMFF039J08- GCCACGCTCCGTGAGGATTTTCATCAAATGATCGGTCAAATCCCGGCCAGCCAAATCAAG
rJMSF021H02- GCCACGCTCCGTGAGGATTTTCATCAAATGATCGGTCAAATCCCGGCCAGCCNAATCAAG
JMSF039F21+ CGGCCAGCCAAATCAAG
JMSF036M11+ TCATCAAATGATCGGTCAAATCCCGGCCAGCCAAATCAAG
JMSF021H02+ TCATCAAATGATCGGTCAAATCCCGGCCAGCCAAATCAAG
____________________________________________________________
consensus GCCACGCTCCGTGAGGATTTTCATCAAATGATCGGTCAAATCCCGGCCAGCCAAATCAAG
. : . : . : . : . : . :
rJMFF039J08- ACGAAGGATGG
rJMSF021H02- ACGAAGGATGGCATG
JMSF039F21+ ACGAAGGATGGCATGTGGAAGAGCATAACCCTCATAAATAGGGACAGTGTGACTGACACC
JMSF036M11+ ACGAAGGATGGCATGGGGAAGGGCGTAACCCTCGTAGATCGGGACAGTGTGACTCACACC
JMFF042J07+ TAACCCTCGTAGATCGGGACAGTGTGACTCACACC
JMSF021H02+ ACGAAGGATGGCATGGGGAAGGGCGTAACCCTCGTAGATCGGGACAGTGTGACTCACACC
____________________________________________________________
consensus ACGAAGGATGGCATGGGGAAGGGCGTAACCCTCGTAGATCGGGACAGTGTGACTCACACC
. : . : . : . : . : . :
JMSF039F21+ ATCACCAGAATCCAAAACAATACCAGTTGTACGCCCACTAGCATATAGCGAAAGAACAGC
JMSF036M11+ ATCACCCGAATCCAAAACAATACCAGTAGTACGGCCACTAGCATACAGGGAAAGAACAGC
JMFF042J07+ ATCACCCGAATCCAAAACAATACCAGTAGTACGGCCACTAGCATACAGGGAAAGAACAGC
JMSF021H02+ ATCACCCGAATCCAAAACAATACCAGTAGTACGGCCACTAGCATACAGGGAAAGAACAGC
____________________________________________________________
consensus ATCACCCGAATCCAAAACAATACCAGTAGTACGGCCACTAGCATACAGGGAAAGAACAGC
. : . : . : . : . : . :
JMSF039F21+ CTGAATGGCAACATACATTGCTGGGGCGTTGAATGTCTCAAACATAATTTGGGTCATCTT
JMSF036M11+ TTGAATGGCAACATACATAGCCGGGGCGTTGAACGTCTCGAACATAATTTGGGTCATCTT
JMFF042J07+ TTGAATGGCAACATACATAGCCGGGGCGTTGAACGTCTCGAACATAATTTGGGTCATCTT
JMFF039J08+ CATCTT
JMSF021H02+ TTGAATGGCAACATACATAGCCGGGGCGTTGAACGTCTCGAACATAATTTGGGTCATCTT
____________________________________________________________
consensus TTGAATGGCAACATACATAGCCGGGGCGTTGAACGTCTCGAACATAATTTGGGTCATCTT
. : . : . : . : . : . :
JMSF039F21+ TTCGCGATTAGCCTTAGGGTTTAAAGGTGCTTCAGTCAAGAGTATTGGATGCTCCTCAGG
JMSF036M11+ TTCGCGATTAGCCTTAGGGTTAAGAGGTGCTTCGGTCAAGAGCACCGGGTGCTCCTCGGG
JMFF042J07+ TTCACGATTAGCCTTAGGGTTAAGAGGTGCTTCGGTCAAGAGCACCGGGTGCTCCTCGGG
JMFF039J08+ TTCGCGATTAGCCTTAGGGTTAAGAGGTGCTTCGGTCAAGAGCACCGGGTGCTCCTCGGG
JMSF021H02+ TTCGCGATTAGCCTTAGGGTTAAGAGGTGCTTCGGTCAAGAGCACCGGGTGCTCCTAGGG
____________________________________________________________
consensus TTCGCGATTAGCCTTAGGGTTAAGAGGTGCTTCGGTCAAGAGCACCGGGTGCTCCTCGGG
. : . : . : . : . : . :
JMSF039F21+ GGCAACACGAAGTTCATTATAAAATGTGTGATGCCATATTTTCTCCATATCATCCCAGTT
JMSF036M11+ GGCCACACGAAGCTCATTATAAAACGTGTGATGCCATATCTTCTCCATATCATCCCAGTT
JMFF042J07+ GGCCACACGAAGCTCATTATAAAACGTGTGATGCCATATCTTCTCCATATCATCCCAGTT
JMFF039J08+ GGCCACACGAAGCTCATTATAAAACGTGTGATGCCATATCTTCTCCATATCATCCCAGTT
JMSF021H02+ GGCCACACGAAGCTCATTATAAAACGTGTGATGCCATATCTTCTCCATATCATCCCAGTT
JMFF048J05+ CGAAGCTCATTATAAAACGTGTGATGCCATATCTTCTCCATATCATCCCAGTT
____________________________________________________________
consensus GGCCACACGAAGCTCATTATAAAACGTGTGATGCCATATCTTCTCCATATCATCCCAGTT
. : . : . : . : . : . :
JMSF039F21+ GTTAACAATACCATGTTCAATGGGATATTTCAAAGTTAAAATTCCTCGCTTTGACTGGGC
JMSF036M11+ GTTAACAATCCCGTGTTCAATTGGGTATTTCAGGGTTAAAATTCCCCGCTTCGACTGAGC
JMFF042J07+ GTTAACAATCCCGTGTTCAATTGGGTATTTCAGGGTTAAAATTCCCCGCTTCGACTGAGC
JMFF039J08+ GTTAACAATCCCGTGTTCAATTGGGTATTTCAGGGTTAAAATTCCCCGCTTCGACTGAGC
JMSF021H02+ GTTAACAATCCCGTGTTCAATTGGGTATTTCAGGGTTAAAATTCCCCGCTTCGACTGAGC
JMFF048J05+ GTTAACAATCCCGTGTTCAATTGGGTATTTCAGGGTTAAAATTCCCCGCTTCGACTGAGC
____________________________________________________________
consensus GTTAACAATCCCGTGTTCAATTGGGTATTTCAGGGTTAAAATTCCCCGCTTCGACTGAGC
. : . : . : . : . : . :
JMSF039F21+ TTCATCTCCTACATATGCATCTTTTTGACCCATACCCACCATAACACCTGTGTGACGGGG
JMSF036M11+ TTCATCTCCCACATACGCATCCTTTTGACCCATACCCACCATCACACCCGTATGTCGAGG
JMFF042J07+ TTCATCTCCCACATACGCATCCTTTTGACCCATACCCACCATCACACCCGTATGTCGAGG
JMFF039J08+ TTCATCTCCCACATACGCATCCTTTTGACCCATACCCACCATCACACCCGTATGTCGAGG
JMSF021H02+ TTCATCTCCCACATACGCATCCTTTTGACCCATACCCACCATCACACCCGTATGTCGAGG
JMFF048J05+ TTCATCTCCCACATACGCATCCTTTTGACCCATACCCACCATCACACCCGTATGTCGAGG
____________________________________________________________
consensus TTCATCTCCCACATACGCATCCTTTTGACCCATACCCACCATCACACCCGTATGTCGAGG
. : . : . : . : . : . :
JMSF039F21+ GCGGCCAACAATGCTAGGGAACACAGCTCGTGGAGCATCATCTCCAGCAAACCCAGCCTT
JMSF036M11+ ACGACCAACAATGCTAGGGAACACAGCCCTTGGAGCATCATCTCCAGCAAACCCAGCCTT
JMFF042J07+ ACGACCAACAATGCTAGGGAACACAGCCCTTGGAGCATCATCTCCAGCAAACCCAGCCTT
JMFF039J08+ ACGACCAACAATGCTAGGGAACACAGCCCTTGGAGCATCATCTCCAGCAAACCCAGCCTT
JMSF021H02+ ACGACCAACAATGCTAGGGAACACAGCCCTTGGAGCATCATCTCCAGCAAACCCAGCCTT
JMFF048J05+ ACGACCAACAATGCTAGGGAACACAGCCCTTGGAGCATCATCTCCAGCAAACCCAGCCTT
____________________________________________________________
consensus ACGACCAACAATGCTAGGGAACACAGCCCTTGGAGCATCATCTCCAGCAAACCCAGCCTT
. : . : . : . : . : . :
JMSF039F21+ GACCATTCCTGTACCATTGTCACAGACGAGTGGCTGAATATCCTCTCCCTCTGCCATCTT
JMSF036M11+ GACCATTCCTGTCCCATTGTCACAGACAAGTGGTTGAATATCATCTGCCTCGGCCATCTT
JMFF042J07+ GACCATTCCTGTCCCATTGTCACAGACAAGTGGTTGAATATCATCTGCCTCGGCCATCTT
JMFF039J08+ GACCATTCCTGTCCCATTGTCACAGACAAGTGGTTGAATATCATCTGCCTCGGCCATCTT
JMSF021H02+ GACCATTCCTGTCCCATTGTCACAGACAAGTGGTTGAATATCATCTGCCTCGGCCATCTT
JMFF048J05+ GACCATTCCTGTCCCATTGTCACAGACAAGTGGTTGAATATCATCTGCCTCGGCCATCTT
____________________________________________________________
consensus GACCATTCCTGTCCCATTGTCACAGACAAGTGGTTGAATATCATCTGCCTCGGCCATCTT
. : . : . : . : . : . :
JMSF039F21+ ATGCTACGTCCT
JMSF036M11+ ATGCTACTTCCTCTCTAGAAGTCGGAATCGGAGGGGGAATAGTGAGAGAGAAAGACAGAC
JMFF042J07+ ATGCTACTTCCTCTCTAGAAGTCGGAATCGGAGGGGGAATAGTGAGAGAGAAAGACAGAC
JMFF039J08+ ATGCTACTTCCTCTCTAGAAGTCGGAATCGGAGGGGGAATAGTGAGAGAGAAAGACAGAC
JMSF021H02+ ATGCTACTTCCTCTCTAGAAGTCGGAATCGGAGGGGGAATAGTGAGAGAGAAAGACAGAC
JMFF048J05+ ATGCTACTTCCTCTCTAGAAGTCGGAATCGGAGGGGGAATAGTGAGAGAGAAAGACAGAC
____________________________________________________________
consensus ATGCTACTTCCTCTCTAGAAGTCGGAATCGGAGGGGGAATAGTGAGAGAGAAAGACAGAC
. : . : . : . : . : . :
JMSF036M11+ AAGGCCGCGAAGGAATCGGAGCTCTGTTCTTCTTCTTCTT
JMFF042J07+ AAGGCCGCGAAGGAATCGGAGCTCTGTTCTTCTTCTTCTTCTTGCTTCTGGAGTTC
JMFF039J08+ AAGGCCGCGAAGGAATCGGAGCTCTGTTCTTCTTCTTCTTCTTGCTTCTGGA
JMSF021H02+ AAGGCCGCGAAGGAATCGGAGCTCTGTTCTTCTTCTTCTTCTTGCTTCTGGAGTTC
JMFF048J05+ AAGGCCGCGAAGGAATCGGAGCTCTGTTCTTCTTCTTCTTCTTGCTTCTGGAGTTCTGGT
____________________________________________________________
consensus AAGGCCGCGAAGGAATCGGAGCTCTGTTCTTCTTCTTCTTCTTGCTTCTGGAGTTCTGGT