| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF035K18 | Sequence | 596 | 003281 (4) | ref|XP_006361450.1| | 5e-21 | PREDICTED: vacuolar protein sorting-associated protein 4-like [Solanum tuberosu | 783 | 006900 (3) | ref|XP_006361499.1| | 2e-93 | PREDICTED: vacuolar protein sorting-associated protein 4B-like [Solanum tuberos |
| JMFF046P21 | Sequence | 590 | 003281 (4) | ref|XP_006361450.1| | 2e-13 | PREDICTED: vacuolar protein sorting-associated protein 4-like [Solanum tuberosu | |||||
| JMSF014P10 | Sequence | 342 | 003281 (4) | 781 | 006900 (3) | ref|XP_004249979.1| | 1e-111 | PREDICTED: vacuolar protein sorting-associated protein 4 isoform X1 [Solanum ly | |||
| JMSF029J08 | Sequence | 629 | 003281 (4) | ref|XP_006361450.1| | 7e-45 | PREDICTED: vacuolar protein sorting-associated protein 4-like [Solanum tuberosu | 750 | 006900 (3) | ref|XP_004249979.1| | 7e-119 | PREDICTED: vacuolar protein sorting-associated protein 4 isoform X1 [Solanum ly |
This contig is upended
. : . : . : . : . : . :
JMSF029J08+ TTGCTGCAGGTCCATTACCCCCTCCCTCATCAAGAACTGCCCGAAT
____________________________________________________________
consensus TTGCTGCAGGTCCATTACCCCCTCCCTCATCAAGAACTGCCCGAAT
. : . : . : . : . : . :
JMSF029J08+ CTCCTCAGCCCTCCTCAAATACTCAGTGAACTTCTGGGTAATTGCCTCCTTAACCTTTGG
____________________________________________________________
consensus CTCCTCAGCCCTCCTCAAATACTCAGTGAACTTCTGGGTAATTGCCTCCTTAACCTTTGG
. : . : . : . : . : . :
JMSF029J08+ ATTCTTCTCATACTTTAAATGAGTCTTAAAATACTCCAATGCATTCATATACAAAGAAAA
JMFF035K18+ TAAAATACTCCAATGCATTCATATACAAAGAAAA
JMFF046P21+ TAAAATACTCCAATGCATTCATATACAAGNAAAA
____________________________________________________________
consensus ATTCTTCTCATACTTTAAATGAGTCTTAAAATACTCCAATGCATTCATATACAAAGAAAA
. : . : . : . : . : . :
JMSF029J08+ GGCCTTTGCATAATTCCCAGCATTATCTTCCTCAACCGCTTGCTTCACATATGCTACTGC
JMFF035K18+ GGCCTTTGCATAATTCCCAGCATTATCTTCCTCAACCGCTTGCTTCACATATGCTACTGC
JMFF046P21+ GGCCTTTGCATAATTCCCAGCATATTCTTCCTCAACCGCTTGCTTCACATATGCTACTGC
____________________________________________________________
consensus GGCCTTTGCATAATTCCCAGCATTATCTTCCTCAACCGCTTGCTTCACATATGCTACTGC
. : . : . : . : . : . :
JMSF029J08+ CTGCTCCTTAAAATTGCTATACATCCTTTCTTCACAAAAACCTCATAAAATTCCAAATAT
JMFF035K18+ CTGCTCCTTAAAATTGCTATACATCCTTTCTTCACAAAAACCTCATAAAATTCCAAATAT
JMFF046P21+ CTGCTCCTTAAAATTGCTATACATCCTTTCTTCACAAAAACCTCATAAAATTCCAAATAT
____________________________________________________________
consensus CTGCTCCTTAAAATTGCTATACATCCTTTCTTCACAAAAACCTCATAAAATTCCAAATAT
. : . : . : . : . : . :
JMSF029J08+ ATCAGTCAAGCCCCTAAAATCACCTTCACAGCTTAAGTCAATTACTCCTCAATTTGGCCA
JMFF035K18+ ATCAGTCAAGCCCCTAAAATCACCTTCACAGCTTAAGTCAATTACTCCTCAATTTGGCCA
JMSF014P10+ TCAGTCAAGCCCCTAAAATCACCTTCACAGCTTAAGTCAATTACTCCTCAATTTGGCCA
JMFF046P21+ ATCAGTCAAGCCCCTAAAATCACCTTCACAGCTTAAGTCAATTACTCCTCAATTTGGCCA
____________________________________________________________
consensus ATCAGTCAAGCCCCTAAAATCACCTTCACAGCTTAAGTCAATTACTCCTCAATTTGGCCA
. : . : . : . : . : . :
JMSF029J08+ AAAAACTAGACAACCCAATTCTGAAATCCTTCCAACACCCAGATAAAAAAACAATTCTTT
JMFF035K18+ AAAAACTAGACAACCCAATTCTGAAATCCTTCCAACACCCAGATAAAAAAACAATTCTTT
JMSF014P10+ AAAAACTAGACAACCCAATTCTGAAATCCTTCCAACACCCAGATAAAAAAACAATTCTTT
JMFF046P21+ AAAAACTAGACAACCCAATTCTGAAATCCTTCCAACACCCAGATAAAAAAACAATTCTTT
____________________________________________________________
consensus AAAAACTAGACAACCCAATTCTGAAATCCTTCCAACACCCAGATAAAAAAACAATTCTTT
. : . : . : . : . : . :
JMSF029J08+ TGAAAGAAGTCCCTTCAAAACTATGGAAAACTACTCACAGCTGACAGCCCAATCCTTGAT
JMFF035K18+ TGAAAGAAGTCCCTTCAAAACTATGGAAAACTACTCACAGCTGACAGCCCAATCCTTGAT
JMSF014P10+ TGAAAGAAGTCCCTTCAAAACTATGGAAAACTACTCACAGCTGACAGCCCAATCCTTGAT
JMFF046P21+ TGAAAGAAGTCCCTTCAAAACTATGGAAAACTACTCACAGCTGACAGCCCAATCCTTGAT
____________________________________________________________
consensus TGAAAGAAGTCCCTTCAAAACTATGGAAAACTACTCACAGCTGACAGCCCAATCCTTGAT
. : . : . : . : . : . :
JMSF029J08+ TCTTCATATTATGAATTTATGATACTCTCTGTCTCTCTTCACTGTAAACCCCTAAGAAAA
JMFF035K18+ TCTTCATATTATGAATTTATGATACTCTCTGTCTCTCTTCACTGTAAACCCCTAAGAAAA
JMSF014P10+ TCTTCATATTATGAATTTATGATACTCTCTGTCTCTCTTCACTGTAAACCCCTAAGAAAA
JMFF046P21+ TCTTCATATTATGAATTTATGATACTCTCTGTCTCTCTTCACTGTAAACCCCTAAGAAAA
____________________________________________________________
consensus TCTTCATATTATGAATTTATGATACTCTCTGTCTCTCTTCACTGTAAACCCCTAAGAAAA
. : . : . : . : . : . :
JMSF029J08+ TGGGAACCCGGACTTGGATCAAGGGGAAGAAGCAAGCCAATGATAGTTGTATATTTGAGT
JMFF035K18+ TGGGAACCCGGACTTGGATCAAGGGGAAGAAGCAAGCCAATGATAGTTGTATATTTGAGT
JMSF014P10+ TGGGAACCCGGACTTGGATCAAGGGGAAGAAGCAAGCCAATGATAGTTGTATATTTGAGT
JMFF046P21+ TGGGAACCCGGACTTGGATCAAGGGGAAGAAGCAAGCCAATGATAGTTGTATATTTGAGT
____________________________________________________________
consensus TGGGAACCCGGACTTGGATCAAGGGGAAGAAGCAAGCCAATGATAGTTGTATATTTGAGT
. : . : . : . : . : . :
JMSF029J08+ TGTGGCGTGCGGG
JMFF035K18+ TGTGGCGTGCGGGATGGGAAATTTGAGAGAGAGAGAAAGTCTCCTATTCTTGATCGGTCT
JMSF014P10+ TGTGGCGTGCGG---GGGAAATTTGAGAGAGAGAGAAAGTCTCCT
JMFF046P21+ TGTGGCGTGCGGGATGGGAAATTTGAGAGAGAGAGAAAGTCTCCTATTCTTGATCGGTCT
____________________________________________________________
consensus TGTGGCGTGCGGGATGGGAAATTTGAGAGAGAGAGAAAGTCTCCTATTCTTGATCGGTCT
. : . : . : . : . : . :
JMFF035K18+ CCGCTGTCCGCTGATTGATAGATACTTTCCTAATCGCGAAGCAGCACAGGCATTTCCATC
JMFF046P21+ CCGCTGTCCGCTGATTGATAGATACTTTCCTAATCGCGAAGCAGCACAGGCATTTCCATC
____________________________________________________________
consensus CCGCTGTCCGCTGATTGATAGATACTTTCCTAATCGCGAAGCAGCACAGGCATTTCCATC