| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF028E15 | Sequence | 163 | 003276 (5) | 711 | 013826 (4) | ref|XP_009788611.1| | 3e-105 | PREDICTED: acetolactate synthase small subunit 2, chloroplastic-like [Nicotiana | |||
| JMFF028G07 | Sequence | 535 | 003276 (5) | ref|XP_009778724.1| | 2e-59 | PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Nicotiana | 664 | 013826 (4) | emb|CDP04139.1| | 1e-107 | unnamed protein product [Coffea canephora] |
| JMFF045P16 | Sequence | 610 | 003276 (5) | ref|XP_009778724.1| | 5e-68 | PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Nicotiana | 593 | 013826 (4) | ref|XP_009788611.1| | 4e-88 | PREDICTED: acetolactate synthase small subunit 2, chloroplastic-like [Nicotiana |
| JMSF030G20 | Sequence | 607 | 003276 (5) | ref|XP_009778724.1| | 3e-77 | PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Nicotiana | 428 | 012393 (8) | ref|XP_008462166.1| | 1e-49 | PREDICTED: ras-related protein Rab7 [Cucumis melo] |
| JMSF044I03 | Sequence | 744 | 003276 (5) | ref|XP_009604733.1| | 7e-105 | PREDICTED: acetolactate synthase small subunit 1, chloroplastic [Nicotiana tome | 695 | 013826 (4) | emb|CDP04139.1| | 8e-117 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF044I03+ AAAAGGAGCTGTCTCGCCCATCTTTTCACGTCTTAAA
____________________________________________________________
consensus AAAAGGAGCTGTCTCGCCCATCTTTTCACGTCTTAAA
. : . : . : . : . : . :
JMSF044I03+ GCAATCTTTCCGGTTCTAGCAAGCTCCTTAATTCCAAACTTCTTTAGATTTCTCAGAACA
____________________________________________________________
consensus GCAATCTTTCCGGTTCTAGCAAGCTCCTTAATTCCAAACTTCTTTAGATTTCTCAGAACA
. : . : . : . : . : . :
JMSF030G20+ TCACCAGTTACCTCTATGGTGACAAAGTGCTCAGATATATCC
JMSF044I03+ GCAGCCATCTTTCCTGGGTCACCAGTTACCTCTATGGTGACAAAGTGCTCAGATATATCC
____________________________________________________________
consensus GCAGCCATCTTTCCTGGGTCACCAGTTACCTCTATGGTGACAAAGTGCTCAGATATATCC
. : . : . : . : . : . :
JMSF030G20+ ACAACTTTTGCTCGAAAGATATCTGCCAACCACATTATTTCTGCTTTTGTGCTCAGTTCT
JMSF044I03+ ACAACTTTTGCTCGAAAGATATCTGCCAACCACATTATTTCTGCTTTTGTGCTCAGTTCT
JMFF028G07+ TTGTGCTCAGTTCT
JMFF045P16+ TTTGCTCGAAAGATATCTGCCAACCACATTATTTCTGCTNTTGTGCTCAGTTCT
____________________________________________________________
consensus ACAACTTTTGCTCGAAAGATATCTGCCAACCACATTATTTCTGCTTTTGTGCTCAGTTCT
. : . : . : . : . : . :
JMSF030G20+ GCATTTAGCTTTATGAGCATCAATTCCCGTTCTACTTGAGGCTCTCTTGATAGATCTTCC
JMSF044I03+ GCATTTAGCTTTATGAGCATCAATTCCCGTTCTACTTGAGGCTCTCTTGATAGATCTTCC
JMFF028G07+ GCATTTAGCTTTATGAGCATCAATTCCCGTTCTACTTGAGGCTCTCTTGATAGATCTTCC
JMFF045P16+ GCATTTAGCTTTATGAGCATCAATTCCCGTTCTACTTGAGGCTCTCTTGATAGATCTTCC
____________________________________________________________
consensus GCATTTAGCTTTATGAGCATCAATTCCCGTTCTACTTGAGGCTCTCTTGATAGATCTTCC
. : . : . : . : . : . :
JMSF030G20+ ACCTTCAAGACATTCACAAGCTTGTTGAGTTGCTCTACAACTTGTTGCAGAACCTTGTCA
JMSF044I03+ ACCTTCAAGACATTCACAAGCTTGTTGAGTTGCTCTACAACTTGTTGCAGAACCTTGTCA
JMFF028G07+ ACCTTCAAGACATTCACAAGCTTGTTGAGTTGCTCTACAACTTGTTGCAGAACCTTGTCA
JMFF045P16+ ACCTTCAAGACATTCACAAGCTTGTTGAGTTGCTCTACAACTTGTTGCAGAACCTTGTCA
____________________________________________________________
consensus ACCTTCAAGACATTCACAAGCTTGTTGAGTTGCTCTACAACTTGTTGCAGAACCTTGTCA
. : . : . : . : . : . :
JMSF030G20+ GTTCCAGAGACAACTATGGTAAAGAGAGCCTTATCTTTGTTCAAACCAACAGCAAGAGAC
JMSF044I03+ GTTCCAGAGACAACTATGGTAAAGAGAGCCTTATCTTTGTTCAAACCAACAGCAAGAGAC
JMFF028G07+ GTTCCAGAGACAACTATGGTAAAGAGAGCCTTATCTTTGTTCAAACCAACAGCAAGAGAC
JMFF045P16+ GTTCCAGAGACAACTATGGTAAAGAGAGCCTTATCTTTGTTCAAACCAACAGCAAGAGAC
____________________________________________________________
consensus GTTCCAGAGACAACTATGGTAAAGAGAGCCTTATCTTTGTTCAAACCAACAGCAAGAGAC
. : . : . : . : . : . :
JMSF030G20+ TCAATGTTGTAGCCTCTCCGTGCAAAAACTCCAGCTATTCTGTTTATTATACCACTTTCA
JMSF044I03+ TCAATGTTGTAGCCTCTCCGTGCAAAAACTCCAGCTATTCTGTTTATTATACCACTTTCA
JMFF028G07+ TCAATGTTGTAGCCTCTCCGTGCAAAAACTCCAGCTATTCTGTTTATTATACCACTTTCA
JMFF045P16+ TCAATGTTGTAGCCTCTCCGTGCAAAAACTCCAGCTATTCTGTTTATTATACCACTTTCA
____________________________________________________________
consensus TCAATGTTGTAGCCTCTCCGTGCAAAAACTCCAGCTATTCTGTTTATTATACCACTTTCA
. : . : . : . : . : . :
JMSF030G20+ TCCCCAACAAACACCGAAATAGTATGGCGCTTTACCCGAGAGACGGAAGGGGGAGGAGAA
JMSF044I03+ TCCCCAACAAACACCGAAATAGTATGGCGCTTTACCCGAGAGACGGAAGGGGGAGGAGAA
JMFF028G07+ TCCCCAACAAACACCGAAATAGTATGGCGCTTTACCCGAGAGACGGAAGGGGGAGGAGAA
JMFF045P16+ TCCCCAACAAACACCGAAATAGTATGGCGCTTTACCCGAGAGACGGAAGGGGGAGGAGAA
____________________________________________________________
consensus TCCCCAACAAACACCGAAATAGTATGGCGCTTTACCCGAGAGACGGAAGGGGGAGGAGAA
. : . : . : . : . : . :
JMSF030G20+ GAAACGGAAACAGCTACAGTCTCGGCACCTTTTCCGGCGGCATTTGCAACAAATGGCGCG
JMSF044I03+ GAAACGGAAACAGCTACAGTCTCGGCACCTTTTCCGGCGGCATTTGCAACAAATGGCGCG
JMFF028G07+ GAAACGGAAACAGCTACAGTCTCGGCACCTTTTCCGGCGGCATTTGCAACAAATGGCGCG
JMFF045P16+ GAAACGGAAACAGCTACAGTCTCGGCACCTTTTCCGGCGGCATTTGCAACAAATGGCGCG
____________________________________________________________
consensus GAAACGGAAACAGCTACAGTCTCGGCACCTTTTCCGGCGGCATTTGCAACAAATGGCGCG
. : . : . : . : . : . :
JMSF030G20+ AAATGTGTTACTTTTGGTCGGAAAACCGCTCTGTTAAGTGGACCTGGCTTGNTAAATGCT
JMSF044I03+ AAATGTGTTACTTTTGGTCGGAAAACCGCTCTGTTAAGTGGACCTGGCTTGCTAAATGCT
JMFF028G07+ AAATGTGTTACTTTTGGTCGGAAAACCGCTCTGTTAAGTGGACCTGGCTTGCTAAATGCT
JMFF028E15+ TCGGAAANCCGCTCTGTTAAGTGGACCTGGCTTGCTAAATGCT
JMFF045P16+ AAATGTGTTACTTTTGGTCGGAAAACCGCTCTGTTAAGTGGACCTGGCTTGCTAAATGCT
____________________________________________________________
consensus AAATGTGTTACTTTTGGTCGGAAAACCGCTCTGTTAAGTGGACCTGGCTTGCTAAATGCT
. : . : . : . : . : . :
JMSF030G20+ GGAAGAAAACTCTTTCTCACGCCCGGACACTGCGACACCGCCGCCGCCATAGTAGTTGAG
JMSF044I03+ GGAAGAAAACTCTTTCTCACGCCCGGACACTGCGACACCGCCGCCGCCATAGTAGTTGAG
JMFF028G07+ GGAAGAAAACTCTTTCTCACGCCCGGACACTGCGACACCGCCGCCGCCATAGTAGTTGAG
JMFF028E15+ GGAAGAAAACTCTTTCTCACGCCCGGACACTGNGACACCGCCGCCGCCATAGTAGTTGAG
JMFF045P16+ GGAAGAAAACTCTTTCTCACGCCCGGACACTGCGACACCGCCGCCGCCATAGTAGTTGAG
____________________________________________________________
consensus GGAAGAAAACTCTTTCTCACGCCCGGACACTGCGACACCGCCGCCGCCATAGTAGTTGAG
. : . : . : . : . : . :
JMSF030G20+ CCGCCCATCTCACACACTTAGCTC
JMSF044I03+ CCGCCCATCTCACACACTTAGCTCAGCTCAGTTCAGTTCAACCAG
JMFF028G07+ CCGCCCATCTCACACACTTAGCTC
JMFF028E15+ CCGCCCATCTCACACACTTAGCTCAGCTCAGTTCAGTTCAACCAGCAATGATACAAATAC
JMFF045P16+ CCGCCCATCTCACACACTTAGCTCAGCTCAGTTCAGTTCAACCAGCAATGATACAAATAC
____________________________________________________________
consensus CCGCCCATCTCACACACTTAGCTCAGCTCAGTTCAGTTCAACCAGCAATGATACAAATAC