| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF045G01 | Sequence | 543 | 003272 (7) | ref|XP_010478266.1| | 2e-18 | PREDICTED: 50S ribosomal protein L34, chloroplastic [Camelina sativa] | 553 | 003272 (7) | ref|XP_006303384.1| | 3e-18 | hypothetical protein CARUB_v10010533mg [Capsella rubella] gb|EOA36282.1| hypothe |
| JMFN025I19 | Sequence | 571 | 003272 (7) | ref|XP_010478266.1| | 3e-19 | PREDICTED: 50S ribosomal protein L34, chloroplastic [Camelina sativa] | |||||
| JMFN030E14 | Sequence | 315 | 003272 (7) | ||||||||
| JMFN039G23 | Sequence | 623 | 003272 (7) | ref|XP_010478266.1| | 5e-19 | PREDICTED: 50S ribosomal protein L34, chloroplastic [Camelina sativa] | |||||
| JMSF053K13 | Sequence | 584 | 003272 (7) | ref|XP_010478266.1| | 5e-19 | PREDICTED: 50S ribosomal protein L34, chloroplastic [Camelina sativa] | 544 | 003272 (7) | ref|XP_010478266.1| | 3e-19 | PREDICTED: 50S ribosomal protein L34, chloroplastic [Camelina sativa] |
This contig is upended
. : . : . : . : . : . :
rJMFF045G01- CCTTATGGCGGATCACCCTGGAGAGCTTTTTTTTTT
____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAGCTTTTTTTTTT
. : . : . : . : . : . :
rJMFF045G01- TTTTCTTTTTTTTTTTTTTAATCAAATTATGCAATGCATGCAAAAAGAAAGATCTCACCA
JMFN039G23+ CACCA
____________________________________________________________
consensus TTTTCTTTTTTTTTTTTTTAATCAAATTATGCAATGCATGCAAAAAGAAAGATCTCACCA
. : . : . : . : . : . :
rJMFF045G01- GAACAAAGAATGCAAATTAGATGTGTGAATAAAACCATCAAACACACTGATAAGAAACTG
JMSF053K13+ TGTGAATAAAACCATCAAACACACTGATAAGAAACTG
JMFN039G23+ GAACAAAGAATGCAAATTAGATGTGTGAATAAAACCATCAAACACACTGATAAGAAACTG
____________________________________________________________
consensus GAACAAAGAATGCAAATTAGATGTGTGAATAAAACCATCAAACACACTGATAAGAAACTG
. : . : . : . : . : . :
rJMFF045G01- CAAGTAGTCTCAAAAAGGACTGCATTTACCTACAACAAACAGCATACATGCCAAAAACAC
rJMSF053K13- AGTAGTCTCAGAAAGGACTGCATTTACCTACAACAAACAGCATACATGCCAAAAACAC
JMSF053K13+ CAAGTAGTCTCAGAAAGGACTGCATTTACCTACAACAAACAGCATACATGCCAAAAACAC
JMFN039G23+ CAAGTAGTCTCAGAAAGGACTGCATTTACCTACAACAAACAGCATACATGCCAAGAACGC
JMFN025I19+ AGTCTCAGAAAGGACTGCATTTACCTACAACAAACAGCATACATGCCAAAAACAC
JMFF045G01+ CAC
____________________________________________________________
consensus CAAGTAGTCTCAGAAAGGACTGCATTTACCTACAACAAACAGCATACATGCCAAAAACAC
. : . : . : . : . : . :
rJMFF045G01- AAAGGATCAAGCCCGTTTCCCACTATACGGGTTGGTCTTGGTGCAAAGATTATGTCGACC
rJMSF053K13- AAAGGATCAAGCCCGTTTCCCACTATACGGGTTGGTCTTGGTGCAGAGATTATGTCGACC
JMSF053K13+ AAAGGATCAAGCCCGTTTCCCACTATACGGGTTGGTCTTGGTGCAGAGATTATGTCGACC
JMFN039G23+ AAAGGATCAAGCCCGTTTCCCACTATACGGGTTGGTCTTGGTGCAGAGATTATGTCGACC
JMFN025I19+ AAAGGATCAAGCCCGTTTCCCACTATACGGGTTGGTCTTGGTACAGAGATTATGTCGACC
JMFF045G01+ AAAGGATCAAGCCCGTTTCCCGCTATACGGGGTGGTCTTGGTGCAGAGATTATGTCGACC
____________________________________________________________
consensus AAAGGATCAAGCCCGTTTCCCACTATACGGGTTGGTCTTGGTGCAGAGATTATGTCGACC
. : . : . : . : . : . :
rJMFF045G01- CTTGGCCCGTCTTCGCTTCAAAAGTGCTCTTCCACTCGTGGTGCGCATGCGCCTACGGAA
rJMSF053K13- CTTGGCCCGTCTTCGCTTCAAAAGTGCTCTTCCACTCGTGGTGCGCATGCGCCTACGGAA
JMSF053K13+ CTTGGCCCGTCTTCGCTTCAAAAGTGCTCTTCCACTCGTGGTGCGCATGCGCCTACGGAA
JMFN039G23+ CTTGGCCCGTCTTCGCTTCAAAAGTGCTCTTCCACTCGTGGTGCGCATGCGCCTACGGAA
JMFN025I19+ CTTGGCCCGTCTTCGCTTCAAAAGTGCTCTTCCACTCGTGGTGCGCATGCGCCTACGGAA
JMFF045G01+ CTTGGCCCGTCTTCGCTTCAAAAGTGCTCTTCCACTCGTGGTGCGCATGCGCCTACGGAA
____________________________________________________________
consensus CTTGGCCCGTCTTCGCTTCAAAAGTGCTCTTCCACTCGTGGTGCGCATGCGCCTACGGAA
. : . : . : . : . : . :
rJMFF045G01- GCCATGTGTTCGGGCTAACGACTTCCTAAACCTACTCCTCTTGGTTTGACAAAGAGCAGC
rJMSF053K13- GCCATGTGTTCGGGCTAACGACTTCCTAGACCTACTCCTCTTGGTTTGACAAAGAGCAGC
JMSF053K13+ GCCATGTGTTCGGGCTAACGACTTCCTAGACCTACTCCTCTTGGTTTGACAAAGAGCAGC
JMFN039G23+ GCCATGTGTTCGGGCTAACGACTTCCTAGACCTACTCCTCTTGGTTTGACAAAGAGCAGC
JMFN030E14+ ACTCCTCTTGGTTTGACAAAGGGCAGC
JMFN025I19+ GCCATGTGTTCGGGCTAACGACTTCCTAGACCTACTCCTCTTGGTTTGACAAAGAGCAGC
JMFF045G01+ GCCATGTGTTCGGGCTAACGACTTCCTAGACCTACTCCTCTTGGTTTGACAAAGAGCAGC
____________________________________________________________
consensus GCCATGTGTTCGGGCTAACGACTTCCTAGACCTACTCCTCTTGGTTTGACAAAGAGCAGC
. : . : . : . : . : . :
rJMFF045G01- TTTCCCTGCTCTAACCACCAAAACACGCCTTCTACCCGTGCTCACTCCACTGTTAATATT
rJMSF053K13- TTTCCCTGCTCTAACCACCAGAACACGCCTTCTACCCGTGCTCACTCCACTGTTAATATT
JMSF053K13+ TTTCCCTGCTCTAACCACCAGAACACGCCTTCTACCCGTGCTCACTCCACTGTTAATATT
JMFN039G23+ TTTCCCTGCTCTAACCACCAGAACACGCCTTCTACCCGTGCTCACTCCACTGTTAATATT
JMFN030E14+ TTTCCCTGCTCTAACCACCAGAACACGCCTTCTACCCGTGCTCACTCCACTGTTAATATT
JMFN025I19+ TTTCCCTGCTCTAACCACCAGAACACGCCTTCTACCCGTGCTCACTCCACTGTTAATATT
JMFF045G01+ TTTCCCTGCTCTAACCACCAGAACACGCCTTCTACCCGTGCTCACTCCACTGTTAATATT
____________________________________________________________
consensus TTTCCCTGCTCTAACCACCAGAACACGCCTTCTACCCGTGCTCACTCCACTGTTAATATT
. : . : . : . : . : . :
rJMFF045G01- GAAGCTCAACCCCAGTGATGAACCTGAGAAGGAGGAACTAGAAATGCTAGAGAGCGGTGA
rJMSF053K13- GAAGCTCAACCCCAGTGATGAACCTGAGAAGGAGGAACTAGAAATGCTAGAGAGCGGTGA
JMSF053K13+ GAAGCTCAACCCCAGTGATGAACCTGAGAAGGAGGAACTAGAAATGCTAGAGAGCGGTGA
JMFN039G23+ GAAGCTCAACCCCAGTGATGAACCTGAGAAGGAGGAACTAGAAATGCTAGAGAGCGGTGA
JMFN030E14+ GAAGCTCAACCCCAGTGATGAACCTGAGAAGGAGGATCTAGAAATGCTAGAGAGCGGTGA
JMFN025I19+ GAAGCTCAACCCCAGTGATGAACCTGAGAAGGAGGAACTAGAAATGCTAGAGAGCGGTGA
JMFF045G01+ GAAGCTCAACCCCAGTGATGAACCTGAGAAGGAGGAACTAGAAATGCTAGAGAGCGGTGA
____________________________________________________________
consensus GAAGCTCAACCCCAGTGATGAACCTGAGAAGGAGGAACTAGAAATGCTAGAGAGCGGTGA
. : . : . : . : . : . :
rJMFF045G01- AGAAGCAGAGACAAAGGAGCAGCGAAGGAAGCCAGGA
rJMSF053K13- AGAAGCAGAGACAAAGGAGCAGCGAAGGAAGCCAGGAGCTGTGGATTTGAGAGAGACCGA
JMSF053K13+ AGAAGCAGAGACAAAGGAGCAGCGAAGGAAGCCAGGAGCTGTGGATTTGAGAGAGACCGA
JMFN039G23+ AGAAGCAGAGACAAAGGAGCAGCGAAGGAAGCCAGGAGCTGTGGATTTGAGAGAGACCGA
JMFN030E14+ AGAAGCAGAGACAAAGGAGCAGCGAAGGAAGCCAGGAGCTGTGGATTTGAGAGAGACCGA
JMFN025I19+ AGAAGCAGAGACAAAGGAGCAGCGAAGGAAGCCAGGAGCTGTGGATTTGAGAGAGACCGA
JMFF045G01+ AGAAGCAGAGACAAAGGAGCAGCGAAGGAAGCCAGGAGCTGTGGATTTGAGAGAGACCGA
____________________________________________________________
consensus AGAAGCAGAGACAAAGGAGCAGCGAAGGAAGCCAGGAGCTGTGGATTTGAGAGAGACCGA
. : . : . : . : . : . :
rJMSF053K13- GGCGGGTGTAGTAGCTCTTGAAGCGGCGGCGAGCGACAGAGAAGCCGAGGTTGCCGGCCT
JMSF053K13+ GGCGGGTGTAGTAGCTCTTGAAGCGGCGGCGAGCGACAGAGAAGCCGAGGTTGCCGGCCT
JMFN039G23+ GGCGGGTGTAGTAGCTCTTGAAGCGGCGGCGAGCGACAGAGAAGCCGAGGTTGCCGGCCT
JMFN030E14+ GGCGGGTGTAGTAGCTCTTGAAGCGGCGGCGAGCGACAGAGAAGCCGAGGTTGCCGGCCT
JMFN025I19+ GGCGGGTGTAGTAGCTCTTGAAGCGGCGGCGAGCGACAGAGAAGCCGAGGTTGCCGGCCT
JMFF045G01+ GGCGGGTGTAGTAGCTCTTGAAGCGGCGGCGAGCGACAGAGAAGCCGAGGTTGCCGGCCT
____________________________________________________________
consensus GGCGGGTGTAGTAGCTCTTGAAGCGGCGGCGAGCGACAGAGAAGCCGAGGTTGCCGGCCT
. : . : . : . : . : . :
rJMSF053K13- TTGTCGGACGCCTGTGCAGAGCCACGTTCCTGTTGCAACAGCAGCCATTGTTTC
JMSF053K13+ TTGTCGGACGCCTGTGCAGAGCCACGTTCCTGTTGCAACAGCAGCCATTGTTTC
JMFN039G23+ TTGTCGGACGCCGGTGCAGAGCCACGTTCCTGTTGCAACAGCAGCCATTG-TTCACCTCT
JMFN030E14+ TTGTCGGAGTCCTGTGCAGAGCCACGTTCCTGT
JMFN025I19+ TTGTCGGACGCCTGTGCAGAGCCACGTTCCTGTTGCAACAGCAGCCATTGTTTCACCTCT
JMFF045G01+ TTGTCGGACGCCTGTGCAGAGCCACGTTCCTGTTGCAACAGCAGCCATTGTTTCACCTCT
____________________________________________________________
consensus TTGTCGGACGCCTGTGCAGAGCCACGTTCCTGTTGCAACAGCAGCCATTGTTTCACCTCT
. : . : . : . : . : . :
JMFN039G23+ CTTCCTATCTACAAACCAA
JMFN025I19+ CTTCCTATCTACAAACCAAGTTTAAGGCTTTGGCTC
JMFF045G01+ CTTCCTATCTACAAACCAAGTTTAAGGCTTTGGCTCTTTGCAGCCTTATCGGATAAGCTT
____________________________________________________________
consensus CTTCCTATCTACAAACCAAGTTTAAGGCTTTGGCTCTTTGCAGCCTTATCGGATAAGCTT