Contig 003265:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043J12Sequence631003265 (2)emb|CDP02325.1|9e-48unnamed protein product [Coffea canephora]576023394
JMFN028E07Sequence573003265 (2)ref|NP_001233792.1|1e-50TCP transcription factor 5 [Solanum lycopersicum] gb|ADM87254.1| TCP transcripti

Alignment

This contig is upended


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JMFN028E07+                                                           TGACTATCATCA
                      ____________________________________________________________
consensus                                                             TGACTATCATCA
 
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JMFN028E07+           TTATCGGCTTCTGCTATCTCTTTAGACGACTTGTGGTTGGTGGGTGGCTCGAGGGGAACC
                      ____________________________________________________________
consensus             TTATCGGCTTCTGCTATCTCTTTAGACGACTTGTGGTTGGTGGGTGGCTCGAGGGGAACC
 
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JMFN028E07+           CCTTCTTTGACACCATGAGATTCGGCGNCGNCGGTGGCGGCGGCGGCGGCGGAACAAAGC
                      ____________________________________________________________
consensus             CCTTCTTTGACACCATGAGATTCGGCGNCGNCGGTGGCGGCGGCGGCGGCGGAACAAAGC
 
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JMFN028E07+           CATTGTTGAAGATTGGGGTTGAAGTTTCCGGTGGGAGGCAGCTGGAGAGGAGGCAGTTCG
JMFF043J12+                                        GGTGGGAGGCAGCTGGAGAGGAGGCAGTTCG
                      ____________________________________________________________
consensus             CATTGTTGAAGATTGGGGTTGAAGTTTCCGGTGGGAGGCAGCTGGAGAGGAGGCAGTTCG
 
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JMFN028E07+           TCGATTTCATTCTTGGCAACGTTAAGCAACCAATCAACAACTTTACTGGGTTGATTTAGG
JMFF043J12+           TCGATTTCATTCTTGGCAACGTTAAGCAACCAATCAACAACTTTACTGGGTTGATTTAGG
                      ____________________________________________________________
consensus             TCGATTTCATTCTTGGCAACGTTAAGCAACCAATCAACAACTTTACTGGGTTGATTTAGG
 
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JMFN028E07+           CCCAGCCGATCTTGGAGGTCGTATAATTGAATAGCAGTGGGCACCGAAAGCCTCACTCGC
JMFF043J12+           CCCAGCCGATCTTGGAGGTCGTATAATTGAATAGCAGTGGGCACCGAAAGCCTCACTCGC
                      ____________________________________________________________
consensus             CCCAGCCGATCTTGGAGGTCGTATAATTGAATAGCAGTGGGCACCGAAAGCCTCACTCGC
 
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JMFN028E07+           CGGTCTCTTAATCCTCGGACGGTGCACACTTTGCTGTGCCGATCTTTCCCGCCGAATGCC
JMFF043J12+           CGGTCTCTTAATCCTCGGACGGTGCACACTTTGCTGTGCCGATCTTTCCCGCCGAATGCC
                      ____________________________________________________________
consensus             CGGTCTCTTAATCCTCGGACGGTGCACACTTTGCTGTGCCGATCTTTCCCGCCGAATGCC
 
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JMFN028E07+           CGCGACACGCGAACAATCCTCGGATCCTTCAGCCTCGTCCACGCCGATGATGTCGGAGTA
JMFF043J12+           CGCGACACGCGAACAATCCTCGGATCCTTCAGCCTCGTCCACGCCGATGATGTCGGAGTA
                      ____________________________________________________________
consensus             CGCGACACGCGAACAATCCTCGGATCCTTCAGCCTCGTCCACGCCGATGATGTCGGAGTA
 
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JMFN028E07+           GCAGCTATAGCAGCAGAAACCTTATTAAGATTCACATTTCTATGGTCGCTGCTTGTGTTC
JMFF043J12+           GCAGCTATAGCAGCAGAAACCTTATTAAGATTCACATTTCTATGGTCGCTGCTTGTGTTC
                      ____________________________________________________________
consensus             GCAGCTATAGCAGCAGAAACCTTATTAAGATTCACATTTCTATGGTCGCTGCTTGTGTTC
 
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JMFN028E07+           CCCTCCTCCGGTTTTGTTGTCGCAGAAAAATCTACTTCTGTTGTAATCATCTTATGTCTC
JMFF043J12+           CCCTCCTCCGGTTTTGTTGTCGCAGAAAAATCTACTTCTGTTGTAATCATCTTATGTCTC
                      ____________________________________________________________
consensus             CCCTCCTCCGGTTTTGTTGTCGCAGAAAAATCTACTTCTGTTGTAATCATCTTATGTCTC
 
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JMFN028E07+           TCATGCTTTCTTCCACATCAA                                       
JMFF043J12+           TCATGCTTTCTTCCACATCAAATTATGATCTGATCTGATGGAGTAGCAGAAAAGTTGGCC
                      ____________________________________________________________
consensus             TCATGCTTTCTTCCACATCAAATTATGATCTGATCTGATGGAGTAGCAGAAAAGTTGGCC
 
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JMFF043J12+           TGGGGGGTTTGGTCTCTAGTTACTTAGCCGCCCAAGCTAAGCTAAGGTAGATGAGATGAG
                      ____________________________________________________________
consensus             TGGGGGGTTTGGTCTCTAGTTACTTAGCCGCCCAAGCTAAGCTAAGGTAGATGAGATGAG
 
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JMFF043J12+           ATGAGAGAGATGATAGGGTTTCCATTTCACACAATATAATGAATAATGAGGGAGGGCATA
                      ____________________________________________________________
consensus             ATGAGAGAGATGATAGGGTTTCCATTTCACACAATATAATGAATAATGAGGGAGGGCATA
 
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JMFF043J12+           TAAAGTGAGGGAGATGAGATGAGAGGAGAATTAAAGATGCTGGAGTCCAAAATACAGTAC
                      ____________________________________________________________
consensus             TAAAGTGAGGGAGATGAGATGAGAGGAGAATTAAAGATGCTGGAGTCCAAAATACAGTAC