Contig 003258:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042G18Sequence622003258 (4)ref|XP_011072492.1|9e-68PREDICTED: protein WHI4 [Sesamum indicum]614003258 (4)ref|XP_009599765.1|182PREDICTED: U1 small nuclear ribonucleoprotein A [Nicotiana tomentosiformis]
JMSF018I02Sequence456003258 (4)ref|XP_011072492.1|1e-53PREDICTED: protein WHI4 [Sesamum indicum]742003258 (4)emb|CDO97927.1|2e-55unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF042G18- AGACCTGACAAGTGTTGCATTGCATGGTGGAAAAAACAGTTTCT
                      ____________________________________________________________
consensus AGACCTGACAAGTGTTGCATTGCATGGTGGAAAAAACAGTTTCT
 
. : . : . : . : . : . :
rJMFF042G18- AGCAATGTACAAATATTATTCGAATTCAGATACAGAGATTAAGGAAGGAACTGATATCAT
rJMSF018I02- AGATACAGAGATTAAGGAAGGAACTGATATCAT
                      ____________________________________________________________
consensus AGCAATGTACAAATATTATTCGAATTCAGATACAGAGATTAAGGAAGGAACTGATATCAT
 
. : . : . : . : . : . :
rJMFF042G18- CTTTCAAGTTGTACTTAATAATGAAGTGATAGCATAAATTAACTGGGTGGCCTATATCAG
rJMSF018I02- CTTTCAAGTTGTACTTAATAATGAAGTGATAGCATAAATTAACTGGGTGGCCTATATCAG
                      ____________________________________________________________
consensus CTTTCAAGTTGTACTTAATAATGAAGTGATAGCATAAATTAACTGGGTGGCCTATATCAG
 
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rJMFF042G18- TTCTTCGTGAACTACTTTGACAAAAATCCACTGTTTCATACTTGACACTTATCATGATAG
rJMSF018I02- TTCTTCGTGAACTACTTTGACAAAAATCCACTGTTTCATACTTGACACTTATCATGATAG
                      ____________________________________________________________
consensus TTCTTCGTGAACTACTTTGACAAAAATCCACTGTTTCATACTTGACACTTATCATGATAG
 
. : . : . : . : . : . :
rJMFF042G18- AAAAGGCTTTGATTTAGGGACTAAATCTATGTGAGCATTGAAGTCATAGCTAATGGACAC
rJMSF018I02- AAAAGGCTTTGATTTAGGGACTAAATCTATGTGAGCATTGAAGTCATAGCTAATGGACAC
                      ____________________________________________________________
consensus AAAAGGCTTTGATTTAGGGACTAAATCTATGTGAGCATTGAAGTCATAGCTAATGGACAC
 
. : . : . : . : . : . :
rJMFF042G18- CAGAATATAAGTTTTTTTTTTACCGTAATGTGATTCAAGGCTTCCTCATTTTAGATCTAG
rJMSF018I02- CAGAATATAAGTTTTTTTTTTACCGTAANGTGATTCAAGGCTTCCTCATTTTANATCTAG
                      ____________________________________________________________
consensus CAGAATATAAGTTTTTTTTTTACCGTAATGTGATTCAAGGCTTCCTCATTTTAGATCTAG
 
. : . : . : . : . : . :
rJMFF042G18- CATATTCTATATGCATGCCACCCCGATCTGACGAAGGCAATGAGCTTCCTTGAAGTGCAT
rJMSF018I02- CATATTCTATATGCATGCCACCCCGATCTGACGAAGGCAATGAGCTTCCTTGAAGTGCAT
                      ____________________________________________________________
consensus CATATTCTATATGCATGCCACCCCGATCTGACGAAGGCAATGAGCTTCCTTGAAGTGCAT
 
. : . : . : . : . : . :
rJMFF042G18- TCATGACCTGGGTCGCTTCTTCAACACCCTCAAAATCAGCAAAAGCAACTGGCATTCCAC
rJMSF018I02- TCATGACCTGGGTCGCTTCTTCAACACCCTCAAAATCAGCAAAAGCAACTGGCATTCCAC
                      ____________________________________________________________
consensus TCATGACCTGGGTCGCTTCTTCAACACCCTCAAAATCAGCAAAAGCAACTGGCATTCCAC
 
. : . : . : . : . : . :
rJMFF042G18- CTCTAGCACGAACCTTCAGGGTGTTGAATCCAGGGTACTGTGAAAGAATTTTCCTAAGTT
rJMSF018I02- CTCTAGCACGAACCTTCAGGGNGTTGAATCCAGGGTACTGTGAAAGAATTTTCCTAAGTT
                      ____________________________________________________________
consensus CTCTAGCACGAACCTTCAGGGTGTTGAATCCAGGGTACTGTGAAAGAATTTTCCTAAGTT
 
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rJMFF042G18- CATCTTCAGTACAGTTGGGCCCGAGATTGGCAATAAATAAAGTGGAACATGGATGAGTAC
rJMSF018I02- CATCTTCAGTACAGTTGGGCCCGAGATTGGCAATAAATAAAGNGGAACATGGATGAGTAC
                      ____________________________________________________________
consensus CATCTTCAGTACAGTTGGGCCCGAGATTGGCAATAAATAAAGTGGAACATGGATGAGTAC
 
. : . : . : . : . : . :
rJMFF042G18- CATCTCCTATTTTCTCAATCTGTTCACTTT
rJMSF018I02- CATCTCCTATTTTCTCAATCTGTTCACTTTGNGCAGCTAAAACATTATCACCATCACCCA
                      ____________________________________________________________
consensus CATCTCCTATTTTCTCAATCTGTTCACTTTGNGCAGCTAAAACATTATCACCATCACCCA
 
. : . : . : . : . : . :
rJMSF018I02- CTTTCTCACCACTCTTCTCANACGAATCATCATTGTTGCCAGAATCAGGATCATTGGATC
JMFF042G18+ CCAGAATCAGGATCATTGGATC
                      ____________________________________________________________
consensus CTTTCTCACCACTCTTCTCANACGAATCATCATTGTTGCCAGAATCAGGATCATTGGATC
 
. : . : . : . : . : . :
rJMSF018I02- TTGATGGGTCATCANAATCACTATCATTTGAATCTTCATCACTTGAAGTGCCTTTGGCAT
JMFF042G18+ TTGATGGGTCATCAGAATCACTATCATTTGAATCTTCATCACTTGAAGTGCCTTTGGCAT
                      ____________________________________________________________
consensus TTGATGGGTCATCAGAATCACTATCATTTGAATCTTCATCACTTGAAGTGCCTTTGGCAT
 
. : . : . : . : . : . :
rJMSF018I02- CTGTATNGGATTTAGATCTGTTATCAATAACAACATAGGGCCCACTCCC
JMFF042G18+ CTGTATTGGATTTAGATCTGTTATCAATAACAACATAGGGCCCACTCCCTGGTCTCTTTG
                      ____________________________________________________________
consensus CTGTATTGGATTTAGATCTGTTATCAATAACAACATAGGGCCCACTCCCTGGTCTCTTTG
 
. : . : . : . : . : . :
JMSF018I02+ GATCTGGCAATTTCAATGTGCAAAGTGGATCCTGTTTGAGGATCAA
JMFF042G18+ TCCTCCTGGAGTTTGATCTGGCAATTTCAATGTGCAAAGTGGATCCTGTTTGAGGATCAA
                      ____________________________________________________________
consensus TCCTCCTGGAGTTTGATCTGGCAATTTCAATGTGCAAAGTGGATCCTGTTTGAGGATCAA
 
. : . : . : . : . : . :
JMSF018I02+ ACTTCACACCATTTAACGAGTGCAATGCTGCCATTGCTGATTGATGATCTACAAAGGTGG
JMFF042G18+ ACTTCACACCATTTAACGAGTGCAATGCTGCCATTGCTGATTGATGATCTACAAAGGTGG
                      ____________________________________________________________
consensus ACTTCACACCATTTAACGAGTGCAATGCTGCCATTGCTGATTGATGATCTACAAAGGTGG
 
. : . : . : . : . : . :
JMSF018I02+ CAAATGCAACAACCTGATCTCCGCGACCAGTGTACTTGAGCTGACAAGACTCGAAGCCGG
JMFF042G18+ CAAATGCAACAACCTGATCTCCGCGACCAGTGTACTTGAGCTGACAAGACTCGAAGCCGG
                      ____________________________________________________________
consensus CAAATGCAACAACCTGATCTCCGCGACCAGTGTACTTGAGCTGACAAGACTCGAAGCCGG
 
. : . : . : . : . : . :
JMSF018I02+ GACGGCGGCGGAAGAGATTGTGAATTTCACGAGCTTTAACGTCGTCTGGGAGGCCGGACA
JMFF042G18+ GACGGCGGCGGAAGGGATTGTGAATTTCACGAGCTTTAACGTCGTCTGGGAGGCCGGACA
                      ____________________________________________________________
consensus GACGGCGGCGGAAGGGATTGTGAATTTCACGAGCTTTAACGTCGTCTGGGAGGCCGGACA
 
. : . : . : . : . : . :
JMSF018I02+ CGAATAGGGTTCGAATCATATCGCGTTCGTTTTTATTACCGACGGTGTAGCCGTAATCTG
JMFF042G18+ CGAATAGGGTTCGAATCATATCGCGTTCGTTTTTATTACCGACGGTGTAGCCGTAATCTG
                      ____________________________________________________________
consensus CGAATAGGGTTCGAATCATATCGCGTTCGTTTTTATTACCGACGGTGTAGCCGTAATCTG
 
. : . : . : . : . : . :
JMSF018I02+ GAATGGGTAGTGGTTGGGGGCGGTAGTAAGGGTCGTAGGGCTGGTGGAGAGCCATCTCTT
JMFF042G18+ GAATGGGTAGTGGTTGGGGGCGGTAGTAAGGGTCGTAGGGCTGGTGGAGAGCCATCTCTT
                      ____________________________________________________________
consensus GAATGGGTAGTGGTTGGGGGCGGTAGTAAGGGTCGTAGGGCTGGTGGAGAGCCATCTCTT
 
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JMSF018I02+ CTCTCCGTCGGAGGTCGTCGAGCGTAGCGGTGGCAGATGATTAATTATAGAGACTGCGAA
JMFF042G18+ CTCTCCGTCGGAGGTCGTCGAGCGTAGCGGTGGCAGATGATTAATTATAGAGACTGCGAA
                      ____________________________________________________________
consensus CTCTCCGTCGGAGGTCGTCGAGCGTAGCGGTGGCAGATGATTAATTATAGAGACTGCGAA
 
. : . : . : . : . : . :
JMSF018I02+ GTCTACACAAATTCCCGTGGCTAGTTTCGTCGGAGAAAAAGTATTCGGTC
JMFF042G18+ GTCTACACAAATTCCCGTGGCTAGTTTCGTCGGAGAAAAAGTATTCGGTCTCGAGTCATG
                      ____________________________________________________________
consensus GTCTACACAAATTCCCGTGGCTAGTTTCGTCGGAGAAAAAGTATTCGGTCTCGAGTCATG