Contig 003257:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005K13Sequence542003257 (2)ref|XP_011078811.1|3e-108PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Sesamum indicu733011151 (2)ref|XP_010312071.1|9e-35PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Solanum lycope
JMFF042C20Sequence630003257 (2)ref|XP_009628616.1|1e-130PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Nicotiana tome616011151 (2)gb|ACN27128.1|1e-07unknown [Zea mays]

Alignment

This contig is upended


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JMFF042C20+                                         TGAACATTCACATGAGTATNTGCCACACAA
                      ____________________________________________________________
consensus                                           TGAACATTCACATGAGTATNTGCCACACAA
 
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JMFF005K13+                                                                    ACC
JMFF042C20+           ACAAGCTGACGCTTCCCAGGGTTATCAACTCCCTGGTTACCGAACTTTGCCTCGAGAACC
                      ____________________________________________________________
consensus             ACAAGCTGACGCTTCCCAGGGTTATCAACTCCCTGGTTACCGAACTTTGCCTCGAGAACC
 
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JMFF005K13+           ACAATGAGTGCAACATTATCCTTGATCAAACGACCTAGAGCGGTTTTCTTTTGAGCACTG
JMFF042C20+           ACAATGAGTGCAACATTATCCTTGATCAAACGACCTAGAGCGGTTTTCTTTTGAGCACTG
                      ____________________________________________________________
consensus             ACAATGAGTGCAACATTATCCTTGATCAAACGACCTAGAGCGGTTTTCTTTTGAGCACTG
 
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JMFF005K13+           GGAACTAGAGCATCAGTCAACGACTGTGCAGCTTTGTTAAACTCAACCTCATATTTCTTA
JMFF042C20+           GGAACTAGAGCATCAGTCAACGACTGTGCAGCTTTGTTAAACTCAACCTCATATTTCTTA
                      ____________________________________________________________
consensus             GGAACTAGAGCATCAGTCAACGACTGTGCAGCTTTGTTAAACTCAACCTCATATTTCTTA
 
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JMFF005K13+           ACATGTGAAAATCTATCTCGCCGGAAAAATGTAGCACAACCATCAATACTATTCATATTT
JMFF042C20+           ACATGTGAAAATCTATCTCGCCGGAAAAATGTAGCACAACCATCAATACTATTCATATTT
                      ____________________________________________________________
consensus             ACATGTGAAAATCTATCTCGCCGGAAAAATGTAGCACAACCATCAATACTATTCATATTT
 
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JMFF005K13+           CCACCAAATACCTCAGAAGTTTTTCTTTTGAAAAGAGCTTGATAGCCATGCTTGTCCAGC
JMFF042C20+           CCACCAAATACCTCAGAAGTTTTTCTTTTGAAAAGAGCTTGATAGCCATGCTTGTCCAGC
                      ____________________________________________________________
consensus             CCACCAAATACCTCAGAAGTTTTTCTTTTGAAAAGAGCTTGATAGCCATGCTTGTCCAGC
 
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JMFF005K13+           TCAGGAGCAAAGAACTCTTCAAAATGGTCACTTTGAACCTCTTGAAGACAAACAATGCCA
JMFF042C20+           TCAGGAGCAAAGAACTCTTCAAAATGATCACTTTGAACCTCTTGAAGACAAACAATGTCA
                      ____________________________________________________________
consensus             TCAGGAGCAAAGAACTCTTCAAAATGGTCACTTTGAACCTCTTGAAGACAAACAATGTCA
 
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JMFF005K13+           GCACGATAGCCAACTATTTCACGCAATAGGTTCTGCCTACGATATGTCCAAGAAAGGGCC
JMFF042C20+           GCACGATAGCCAACTATTTCACGCAATAGGTTCTGCCTACGATATGTCCAAGAAAGGGCC
                      ____________________________________________________________
consensus             GCACGATAGCCAACTATTTCACGCAATAGGTTCTGCCTACGATATGTCCAAGAAAGGGCC
 
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JMFF005K13+           CAGGAGGGACAATAACTGTATAATTCACTTGTCGCATAGGAATCAGATAAGATGTTGTAT
JMFF042C20+           CAGGAGGGACAATAACTGTATAATTCACTTGTCGCATAGGAATCAGATAAGATGTTGTAT
                      ____________________________________________________________
consensus             CAGGAGGGACAATAACTGTATAATTCACTTGTCGCATAGGAATCAGATAAGATGTTGTAT
 
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JMFF005K13+           GAGAGCACAGTAAACGTTCCGGAAGACGAAATGCGGCCACCTAAATCAGAAATTACAGGA
JMFF042C20+           GAGAGCACAGTAAACGTTCCGGAAGACGAAATGCGGCCACCTAAATCAGAAATTACAGGA
                      ____________________________________________________________
consensus             GAGAGCACAGTAAACGTTCCGGAAGACGAAATGCGGCCACCTAAATCAGAAATTACAGGA
 
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JMFF005K13+           CCATCATCTTCTCTGACTGAAATCAAGCGACGTGGAGTAGGAGATGGAGCCGGAATCA  
JMFF042C20+           CCATCATCTTCTCTGACTGAAATCAAGCGACGTGGAGTAGGAGATGGAGCCGGAATCACA
                      ____________________________________________________________
consensus             CCATCATCTTCTCTGACTGAAATCAAGCGACGTGGAGTAGGAGATGGAGCCGGAATCACA