Contig 003253:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024D11Sequence523003253 (4)ref|XP_009779562.1|2e-43PREDICTED: RNA-binding protein 42-like isoform X1 [Nicotiana sylvestris]748003253 (4)ref|XP_011075028.1|1e-85PREDICTED: RNA-binding protein 42, partial [Sesamum indicum]
JMFF041E13Sequence652003253 (4)ref|XP_009779563.1|2e-59PREDICTED: RNA-binding protein 42-like isoform X2 [Nicotiana sylvestris]557003253 (4)ref|XP_011075028.1|3e-62PREDICTED: RNA-binding protein 42, partial [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF041E13- GTACATAACCTTCTTTTCATTAACAGAATGTTATTCATGATCTCTG
rJMFF024D11- GAATGTTATTCATGATCTCTG
                      ____________________________________________________________
consensus GTACATAACCTTCTTTTCATTAACAGAATGTTATTCATGATCTCTG
 
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rJMFF041E13- TACAACAATGGCATTTTGGAAGTTCAGAAGTAGACTTGACAAAGCTACCTACATGCTACA
rJMFF024D11- TACAACAATGGCATTTTGGAAGTTCAGAAGTAGACTTGACAAAGCTACCTACATGCTACA
                      ____________________________________________________________
consensus TACAACAATGGCATTTTGGAAGTTCAGAAGTAGACTTGACAAAGCTACCTACATGCTACA
 
. : . : . : . : . : . :
rJMFF041E13- GAGTAACAGCTTAGCTTGTCTTTGCATCTCACACTGCCACACTGGGCATCATGGGCATAT
rJMFF024D11- GAGTAACAGCTTAGCTTGTCTTTGCATCTCACACTGCCACACTGGGCATCATGGGCATAT
                      ____________________________________________________________
consensus GAGTAACAGCTTAGCTTGTCTTTGCATCTCACACTGCCACACTGGGCATCATGGGCATAT
 
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rJMFF041E13- TGGGAATTTGGGATTCACTTGTGCAATACACTCTTCTTGGGCAGCTTGGCCTTCTTCTGA
rJMFF024D11- TGGGAATTTGGGATTCACTTGTGCAATACACTCTTCTTGGGCAGCTTGGCCTTCTTCTGA
                      ____________________________________________________________
consensus TGGGAATTTGGGATTCACTTGTGCAATACACTCTTCTTGGGCAGCTTGGCCTTCTTCTGA
 
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rJMFF041E13- GATTGGTTCTTTTGCCTTTCTAGAGCTTCATAGTCAATCCTGTCTTGCCACCTACTCTTC
rJMFF024D11- GATTGGTTCTTTTGCCTTTCTAGAGCTTCATAGTCAATCCTGTCTTGCCACCTACTCTTC
                      ____________________________________________________________
consensus GATTGGTTCTTTTGCCTTTCTAGAGCTTCATAGTCAATCCTGTCTTGCCACCTACTCTTC
 
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rJMFF041E13- CGAAGCTTGATTGGTCGATTTCCAACATATTTGCCATTCATTTCTTTAAGGGCTGCTGCA
rJMFF024D11- CGAAGCTTGATTGGTCGATTTCCAACATATTTGCCATTCATTTCTTTAAGGGCTGCTGCA
                      ____________________________________________________________
consensus CGAAGCTTGATTGGTCGATTTCCAACATATTTGCCATTCATTTCTTTAAGGGCTGCTGCA
 
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rJMFF041E13- AGGTCTGAAGGGTTGGAAAAACTTACAAATCCATAGCCTTTGGTTTTACCTGTCCGCTTA
rJMFF024D11- AGGTCTGAAGGGTTGGAAAAACTTACAAATCCATAGCCTTTGGTTTTACCTGTCCGCTTA
JMFF041E13+ AGGGTTGGAAAAACTTACAAATCCATAGCCTTTGGTTTTACCTGTCCGCTTA
                      ____________________________________________________________
consensus AGGTCTGAAGGGTTGGAAAAACTTACAAATCCATAGCCTTTGGTTTTACCTGTCCGCTTA
 
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rJMFF041E13- TCTCGCACAACAGGAGACATTTGAGGGCTCCAAGCACTTGAAACAAACATCCTGGCCATG
rJMFF024D11- TCTCGCACAACAGGAGACATTTGAGGGCTCCAAGCACTTGAAACAAACATCCTGGCCATG
JMFF041E13+ TCTCGCACAACAGGAGACATTTGAGGGCTCCAAGCACTTGAAACAAACATCCTGGCCATG
                      ____________________________________________________________
consensus TCTCGCACAACAGGAGACATTTGAGGGCTCCAAGCACTTGAAACAAACATCCTGGCCATG
 
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rJMFF041E13- TTAAATGAAGGAAATCTTGAAAATGCTTTTGATAAGACATCATCATTCACCTCATTTCCA
rJMFF024D11- TTAAATGAAGGAAATCTTGAAAATGCTTTTGATAAGACATCATCATTCACCTCATTTCCA
JMFF024D11+ AAATGAAGGAAATCTTGAAAATGCTTTTGATAAGACATCATCATTCACCTCATTTCCA
JMFF041E13+ TTAAATGAAGGAAATCTTGAAAATGCTTTTGATAAGACATCATCATTCACCTCATTTCCA
                      ____________________________________________________________
consensus TTAAATGAAGGAAATCTTGAAAATGCTTTTGATAAGACATCATCATTCACCTCATTTCCA
 
. : . : . : . : . : . :
rJMFF041E13- AGATCACCACANAATAGACGATGATCATTTT
rJMFF024D11- AGATCACCACAAAATAGACGATGATCATTTTCTGGCCAATCAGCAAGGGTAGGATCCTCC
JMFF024D11+ AGATCACCACAAAATAGACGATGATCATTTTCTGGCCAATCAGCAAGGGTAGGATCCTCC
JMFF041E13+ AGATCACCACAAAATAGACGATGATCATTTTCTGGCCAATCAGCAAGGGTAGGATCCTCC
                      ____________________________________________________________
consensus AGATCACCACAAAATAGACGATGATCATTTTCTGGCCAATCAGCAAGGGTAGGATCCTCC
 
. : . : . : . : . : . :
rJMFF024D11- CAAGTTTGCCCAGCAGCTTTACGGGGCACTGCTTTCTTCTTGGCCTCAGCTTTGTGCTCA
JMFF024D11+ CAAGTTTGCCCAGCAGCTTTACGGGGCACTGCTTTCTTCTTGGCCTCAGCTTTGTGCTCA
JMFF041E13+ CAAGTTTGCCCAGCAGCTTTACGGGGCACTGCTTTCTTCTTGGCCTCAGCTTTGTGCTCA
                      ____________________________________________________________
consensus CAAGTTTGCCCAGCAGCTTTACGGGGCACTGCTTTCTTCTTGGCCTCAGCTTTGTGCTCA
 
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rJMFF024D11- ATTTCACTGCTTGCAAGTGCAGCTTTCACATTCTGAAGCGCTTCTGGTGTAATTGTCTGC
JMFF024D11+ ATTTCACTGCTTGCAAGTGCAGCTTTCACATTCTGAAGCGCTTCTGGTGTAATTGTCTGC
JMFF041E13+ ATTTCACTGCTTGCAAGTGCAGCTTTCACATTCTGAAGCGCTTCTGGTGTAATTGTCTGC
                      ____________________________________________________________
consensus ATTTCACTGCTTGCAAGTGCAGCTTTCACATTCTGAAGCGCTTCTGGTGTAATTGTCTGC
 
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rJMFF024D11- GCAACCCTTTGAAACAACTGCTGTGCTTGTTGGTATTGAGCTAAAGGGGTACCA
JMFF024D11+ GCAACCCTTTGAAACAACTGCTGTGCTTGTTGGTATTGAGCTAAAGGGGTACCAGGGAGA
JMFF041E13+ GCAACCCTTTGAAACAACTGCTGTGCTTGTTGGTATTGAGCTAAAGGGGTACCAGGGAGA
                      ____________________________________________________________
consensus GCAACCCTTTGAAACAACTGCTGTGCTTGTTGGTATTGAGCTAAAGGGGTACCAGGGAGA
 
. : . : . : . : . : . :
JMFF024D11+ GGAACAGGAGCAGGATACACGGCGGCGGCACCGATGTAAGGCTGCGGCGGTTGTTGGAGG
JMFF041E13+ GGAACAGGAGCAGGATACACGGCGGCGGCACCGATGTAAGGCTGCGGCGGTTGTTGGAGG
                      ____________________________________________________________
consensus GGAACAGGAGCAGGATACACGGCGGCGGCACCGATGTAAGGCTGCGGCGGTTGTTGGAGG
 
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JMFF024D11+ TGAAATGGCGTCGGAAAGTAGGTCCCATTGGCGTAGTTGTACTGCGAAAAGGAAGAACCG
JMFF041E13+ TGAAATGGCGTCGGAAAGTAGGTCCCATTGGCGTAGTTGTACTGCGAAAAGGAAGAACCG
                      ____________________________________________________________
consensus TGAAATGGCGTCGGAAAGTAGGTCCCATTGGCGTAGTTGTACTGCGAAAAGGAAGAACCG
 
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JMFF024D11+ GTAGCCGCCGGAGTCAAAGGCACCGTCGACATAGCGTAGACCGGCGATCAATTGTCGAAA
JMFF041E13+ GTAGCCGCCGGAGTCAAAGGCACCGTCGACATAGCGTAGACCGGCGATCAATTGTCGAAA
                      ____________________________________________________________
consensus GTAGCCGCCGGAGTCAAAGGCACCGTCGACATAGCGTAGACCGGCGATCAATTGTCGAAA
 
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JMFF024D11+ ATGGCGACGTCCGATTAGAATCAAAGAATTCGCGAGGGAAACGCC
JMFF041E13+ ATGGCGACGTCCGATTAGAATCAAAGAATTCGCGAGGGAAACGCCTCGGAACAGCGATGA
                      ____________________________________________________________
consensus ATGGCGACGTCCGATTAGAATCAAAGAATTCGCGAGGGAAACGCCTCGGAACAGCGATGA