Contig 003253:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024D11Sequence523003253 (4)ref|XP_009779562.1|2e-43PREDICTED: RNA-binding protein 42-like isoform X1 [Nicotiana sylvestris]748003253 (4)ref|XP_011075028.1|1e-85PREDICTED: RNA-binding protein 42, partial [Sesamum indicum]
JMFF041E13Sequence652003253 (4)ref|XP_009779563.1|2e-59PREDICTED: RNA-binding protein 42-like isoform X2 [Nicotiana sylvestris]557003253 (4)ref|XP_011075028.1|3e-62PREDICTED: RNA-binding protein 42, partial [Sesamum indicum]

Alignment

This contig is upended


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rJMFF041E13-                        GTACATAACCTTCTTTTCATTAACAGAATGTTATTCATGATCTCTG
rJMFF024D11-                                                 GAATGTTATTCATGATCTCTG
                      ____________________________________________________________
consensus                           GTACATAACCTTCTTTTCATTAACAGAATGTTATTCATGATCTCTG
 
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rJMFF041E13-          TACAACAATGGCATTTTGGAAGTTCAGAAGTAGACTTGACAAAGCTACCTACATGCTACA
rJMFF024D11-          TACAACAATGGCATTTTGGAAGTTCAGAAGTAGACTTGACAAAGCTACCTACATGCTACA
                      ____________________________________________________________
consensus             TACAACAATGGCATTTTGGAAGTTCAGAAGTAGACTTGACAAAGCTACCTACATGCTACA
 
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rJMFF041E13-          GAGTAACAGCTTAGCTTGTCTTTGCATCTCACACTGCCACACTGGGCATCATGGGCATAT
rJMFF024D11-          GAGTAACAGCTTAGCTTGTCTTTGCATCTCACACTGCCACACTGGGCATCATGGGCATAT
                      ____________________________________________________________
consensus             GAGTAACAGCTTAGCTTGTCTTTGCATCTCACACTGCCACACTGGGCATCATGGGCATAT
 
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rJMFF041E13-          TGGGAATTTGGGATTCACTTGTGCAATACACTCTTCTTGGGCAGCTTGGCCTTCTTCTGA
rJMFF024D11-          TGGGAATTTGGGATTCACTTGTGCAATACACTCTTCTTGGGCAGCTTGGCCTTCTTCTGA
                      ____________________________________________________________
consensus             TGGGAATTTGGGATTCACTTGTGCAATACACTCTTCTTGGGCAGCTTGGCCTTCTTCTGA
 
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rJMFF041E13-          GATTGGTTCTTTTGCCTTTCTAGAGCTTCATAGTCAATCCTGTCTTGCCACCTACTCTTC
rJMFF024D11-          GATTGGTTCTTTTGCCTTTCTAGAGCTTCATAGTCAATCCTGTCTTGCCACCTACTCTTC
                      ____________________________________________________________
consensus             GATTGGTTCTTTTGCCTTTCTAGAGCTTCATAGTCAATCCTGTCTTGCCACCTACTCTTC
 
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rJMFF041E13-          CGAAGCTTGATTGGTCGATTTCCAACATATTTGCCATTCATTTCTTTAAGGGCTGCTGCA
rJMFF024D11-          CGAAGCTTGATTGGTCGATTTCCAACATATTTGCCATTCATTTCTTTAAGGGCTGCTGCA
                      ____________________________________________________________
consensus             CGAAGCTTGATTGGTCGATTTCCAACATATTTGCCATTCATTTCTTTAAGGGCTGCTGCA
 
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rJMFF041E13-          AGGTCTGAAGGGTTGGAAAAACTTACAAATCCATAGCCTTTGGTTTTACCTGTCCGCTTA
rJMFF024D11-          AGGTCTGAAGGGTTGGAAAAACTTACAAATCCATAGCCTTTGGTTTTACCTGTCCGCTTA
JMFF041E13+                   AGGGTTGGAAAAACTTACAAATCCATAGCCTTTGGTTTTACCTGTCCGCTTA
                      ____________________________________________________________
consensus             AGGTCTGAAGGGTTGGAAAAACTTACAAATCCATAGCCTTTGGTTTTACCTGTCCGCTTA
 
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rJMFF041E13-          TCTCGCACAACAGGAGACATTTGAGGGCTCCAAGCACTTGAAACAAACATCCTGGCCATG
rJMFF024D11-          TCTCGCACAACAGGAGACATTTGAGGGCTCCAAGCACTTGAAACAAACATCCTGGCCATG
JMFF041E13+           TCTCGCACAACAGGAGACATTTGAGGGCTCCAAGCACTTGAAACAAACATCCTGGCCATG
                      ____________________________________________________________
consensus             TCTCGCACAACAGGAGACATTTGAGGGCTCCAAGCACTTGAAACAAACATCCTGGCCATG
 
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rJMFF041E13-          TTAAATGAAGGAAATCTTGAAAATGCTTTTGATAAGACATCATCATTCACCTCATTTCCA
rJMFF024D11-          TTAAATGAAGGAAATCTTGAAAATGCTTTTGATAAGACATCATCATTCACCTCATTTCCA
JMFF024D11+             AAATGAAGGAAATCTTGAAAATGCTTTTGATAAGACATCATCATTCACCTCATTTCCA
JMFF041E13+           TTAAATGAAGGAAATCTTGAAAATGCTTTTGATAAGACATCATCATTCACCTCATTTCCA
                      ____________________________________________________________
consensus             TTAAATGAAGGAAATCTTGAAAATGCTTTTGATAAGACATCATCATTCACCTCATTTCCA
 
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rJMFF041E13-          AGATCACCACANAATAGACGATGATCATTTT                             
rJMFF024D11-          AGATCACCACAAAATAGACGATGATCATTTTCTGGCCAATCAGCAAGGGTAGGATCCTCC
JMFF024D11+           AGATCACCACAAAATAGACGATGATCATTTTCTGGCCAATCAGCAAGGGTAGGATCCTCC
JMFF041E13+           AGATCACCACAAAATAGACGATGATCATTTTCTGGCCAATCAGCAAGGGTAGGATCCTCC
                      ____________________________________________________________
consensus             AGATCACCACAAAATAGACGATGATCATTTTCTGGCCAATCAGCAAGGGTAGGATCCTCC
 
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rJMFF024D11-          CAAGTTTGCCCAGCAGCTTTACGGGGCACTGCTTTCTTCTTGGCCTCAGCTTTGTGCTCA
JMFF024D11+           CAAGTTTGCCCAGCAGCTTTACGGGGCACTGCTTTCTTCTTGGCCTCAGCTTTGTGCTCA
JMFF041E13+           CAAGTTTGCCCAGCAGCTTTACGGGGCACTGCTTTCTTCTTGGCCTCAGCTTTGTGCTCA
                      ____________________________________________________________
consensus             CAAGTTTGCCCAGCAGCTTTACGGGGCACTGCTTTCTTCTTGGCCTCAGCTTTGTGCTCA
 
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rJMFF024D11-          ATTTCACTGCTTGCAAGTGCAGCTTTCACATTCTGAAGCGCTTCTGGTGTAATTGTCTGC
JMFF024D11+           ATTTCACTGCTTGCAAGTGCAGCTTTCACATTCTGAAGCGCTTCTGGTGTAATTGTCTGC
JMFF041E13+           ATTTCACTGCTTGCAAGTGCAGCTTTCACATTCTGAAGCGCTTCTGGTGTAATTGTCTGC
                      ____________________________________________________________
consensus             ATTTCACTGCTTGCAAGTGCAGCTTTCACATTCTGAAGCGCTTCTGGTGTAATTGTCTGC
 
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rJMFF024D11-          GCAACCCTTTGAAACAACTGCTGTGCTTGTTGGTATTGAGCTAAAGGGGTACCA      
JMFF024D11+           GCAACCCTTTGAAACAACTGCTGTGCTTGTTGGTATTGAGCTAAAGGGGTACCAGGGAGA
JMFF041E13+           GCAACCCTTTGAAACAACTGCTGTGCTTGTTGGTATTGAGCTAAAGGGGTACCAGGGAGA
                      ____________________________________________________________
consensus             GCAACCCTTTGAAACAACTGCTGTGCTTGTTGGTATTGAGCTAAAGGGGTACCAGGGAGA
 
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JMFF024D11+           GGAACAGGAGCAGGATACACGGCGGCGGCACCGATGTAAGGCTGCGGCGGTTGTTGGAGG
JMFF041E13+           GGAACAGGAGCAGGATACACGGCGGCGGCACCGATGTAAGGCTGCGGCGGTTGTTGGAGG
                      ____________________________________________________________
consensus             GGAACAGGAGCAGGATACACGGCGGCGGCACCGATGTAAGGCTGCGGCGGTTGTTGGAGG
 
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JMFF024D11+           TGAAATGGCGTCGGAAAGTAGGTCCCATTGGCGTAGTTGTACTGCGAAAAGGAAGAACCG
JMFF041E13+           TGAAATGGCGTCGGAAAGTAGGTCCCATTGGCGTAGTTGTACTGCGAAAAGGAAGAACCG
                      ____________________________________________________________
consensus             TGAAATGGCGTCGGAAAGTAGGTCCCATTGGCGTAGTTGTACTGCGAAAAGGAAGAACCG
 
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JMFF024D11+           GTAGCCGCCGGAGTCAAAGGCACCGTCGACATAGCGTAGACCGGCGATCAATTGTCGAAA
JMFF041E13+           GTAGCCGCCGGAGTCAAAGGCACCGTCGACATAGCGTAGACCGGCGATCAATTGTCGAAA
                      ____________________________________________________________
consensus             GTAGCCGCCGGAGTCAAAGGCACCGTCGACATAGCGTAGACCGGCGATCAATTGTCGAAA
 
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JMFF024D11+           ATGGCGACGTCCGATTAGAATCAAAGAATTCGCGAGGGAAACGCC               
JMFF041E13+           ATGGCGACGTCCGATTAGAATCAAAGAATTCGCGAGGGAAACGCCTCGGAACAGCGATGA
                      ____________________________________________________________
consensus             ATGGCGACGTCCGATTAGAATCAAAGAATTCGCGAGGGAAACGCCTCGGAACAGCGATGA