Contig 003252:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017L05Sequence536003252 (6)ref|XP_009608692.1|3e-81PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009767002566 (6)ref|XP_009608692.1|1e-79PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009
JMFF019G14Sequence557003252 (6)ref|XP_009608692.1|2e-83PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009764002566 (6)emb|CDP04145.1|4e-108unnamed protein product [Coffea canephora]
JMFF040N03Sequence508003252 (6)ref|XP_009608692.1|3e-72PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009184024393gb|KFK33830.1|5e-07hypothetical protein AALP_AA5G065600, partial [Arabis alpina]
JMFF040N19Sequence504003252 (6)ref|XP_009608692.1|2e-71PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009638002566 (6)ref|XP_006437446.1|9e-82hypothetical protein CICLE_v10032936mg [Citrus clementina] gb|ESR50686.1| hypoth
JMSF002M19Sequence325003252 (6)emb|CDP04144.1|4e-37unnamed protein product [Coffea canephora]708002566 (6)emb|CDP04145.1|2e-108unnamed protein product [Coffea canephora]
JMSF012F12Sequence478003252 (6)ref|XP_009608692.1|2e-69PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009752002566 (6)ref|XP_011044458.1|1e-101PREDICTED: V-type proton ATPase subunit H isoform X2 [Populus euphratica]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF017L05+ GGCCTGAC
JMFF019G14+ TGAACTTTAGGCCTGAC
                      ____________________________________________________________
consensus TGAACTTTAGGCCTGAC
 
. : . : . : . : . : . :
JMSF012F12+ CCAGTTACCTTTCCA
JMFF017L05+ ACTTACTATCAAAGAAAGTATCTTGCAACTCTTCTCTTGCACAAACCAGTTACCTTTCCA
JMFF019G14+ ACTTACTATCAAAGAAAGTATCTTGCAACTCTTCTCTTGCACAAACCAGTTACCTTTCCA
JMFF040N19+ TTGCACAAACCAGTTACCTTTCCA
JMFF040N03+ TTGCACAAACCAGTTACCTTTCCA
                      ____________________________________________________________
consensus ACTTACTATCAAAGAAAGTATCTTGCAACTCTTCTCTTGCACAAACCAGTTACCTTTCCA
 
. : . : . : . : . : . :
JMSF012F12+ GAGCAGTCTTAGGAAAGGTTCATAAGTATCTTCATCTGCAAGAGACTTGTCATGGAATAA
JMFF017L05+ GAGCAGTCTTAGGAAAGGTTCATAAGTATCTTCATCTGCAAGAGACTTGTCATGGAATAA
JMFF019G14+ GAGCAGTCTTAGGAAAGGTTCATAAGTATCTTCATCTGCAAGAGACTTGTCATGGAATAA
JMFF040N19+ GAGCAGTCTTAGGAAAGGTTCATAAGTATCTTCATCTGCAAGAGACTTGTCATGGAATAA
JMFF040N03+ GAGCAGTCTTAGGAAAGGTTCATAAGTATCTTCATCTGCAAGAGACTTGTCATGGAATAA
                      ____________________________________________________________
consensus GAGCAGTCTTAGGAAAGGTTCATAAGTATCTTCATCTGCAAGAGACTTGTCATGGAATAA
 
. : . : . : . : . : . :
JMSF012F12+ TCTTGCTCTTTTTGGGTTAACAGTAAGCATTTCATCAATTAAAGCTAAAACATATTCCAA
JMFF017L05+ TCTTGCTCTTTTTGGGTTAACAGTAAGCATTTCATCAATTAAAGCTAAAACATATTCCAA
JMFF019G14+ TCTTGCTCTTTTTGGGTTAACAGTAAGCATTTCATCAATTAAAGCTAAAACATATTCCAA
JMFF040N19+ TCTTGCTCTTTTTGGGTTAACAGTAAGCATTTCATCAATTAAAGCTAAAACATATTCCAA
JMFF040N03+ TCTTGCTCTTTTTGGGTTAACAGTAAGCATTTCATCAATTAAAGCTAAAACATATTCCAA
                      ____________________________________________________________
consensus TCTTGCTCTTTTTGGGTTAACAGTAAGCATTTCATCAATTAAAGCTAAAACATATTCCAA
 
. : . : . : . : . : . :
JMSF012F12+ TGTTTCTTCCTTGAGAATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
JMSF002M19+ AATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
JMFF017L05+ TGTTTCTTCCTTGAGAATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
JMFF019G14+ TGTTTCTTCCTTGAGAATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
JMFF040N19+ TGTTTCTTCCTTGAGAATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
JMFF040N03+ TGTTTCTTCCTTGAGAATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
                      ____________________________________________________________
consensus TGTTTCTTCCTTGAGAATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
 
. : . : . : . : . : . :
JMSF012F12+ ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
JMSF002M19+ ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
JMFF017L05+ ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
JMFF019G14+ ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
JMFF040N19+ ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
JMFF040N03+ ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
                      ____________________________________________________________
consensus ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
 
. : . : . : . : . : . :
JMSF012F12+ TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
JMSF002M19+ TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
JMFF017L05+ TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
JMFF019G14+ TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
JMFF040N19+ TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
JMFF040N03+ TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
                      ____________________________________________________________
consensus TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
 
. : . : . : . : . : . :
JMSF012F12+ TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
JMSF002M19+ TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
JMFF017L05+ TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
JMFF019G14+ TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
JMFF040N19+ TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
JMFF040N03+ TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
                      ____________________________________________________________
consensus TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
 
. : . : . : . : . : . :
JMSF012F12+ CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
JMSF002M19+ CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
JMFF017L05+ CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
JMFF019G14+ CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
JMFF040N19+ CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
JMFF040N03+ CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
                      ____________________________________________________________
consensus CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
 
. : . : . : . : . : . :
JMSF012F12+ ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAGGTT
JMSF002M19+ ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAG
JMFF017L05+ ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAGGTTGGGAAC
JMFF019G14+ ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAGGTTGGGAACGAGTTTTTTATT
JMFF040N19+ ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAGGTTGGGAACGAGTTTTTTATT
JMFF040N03+ ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAGGTTGGGAACGAGTTTTTTATT
                      ____________________________________________________________
consensus ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAGGTTGGGAACGAGTTTTTTATT