| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017L05 | Sequence | 536 | 003252 (6) | ref|XP_009608692.1| | 3e-81 | PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009 | 767 | 002566 (6) | ref|XP_009608692.1| | 1e-79 | PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009 |
| JMFF019G14 | Sequence | 557 | 003252 (6) | ref|XP_009608692.1| | 2e-83 | PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009 | 764 | 002566 (6) | emb|CDP04145.1| | 4e-108 | unnamed protein product [Coffea canephora] |
| JMFF040N03 | Sequence | 508 | 003252 (6) | ref|XP_009608692.1| | 3e-72 | PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009 | 184 | 024393 | gb|KFK33830.1| | 5e-07 | hypothetical protein AALP_AA5G065600, partial [Arabis alpina] |
| JMFF040N19 | Sequence | 504 | 003252 (6) | ref|XP_009608692.1| | 2e-71 | PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009 | 638 | 002566 (6) | ref|XP_006437446.1| | 9e-82 | hypothetical protein CICLE_v10032936mg [Citrus clementina] gb|ESR50686.1| hypoth |
| JMSF002M19 | Sequence | 325 | 003252 (6) | emb|CDP04144.1| | 4e-37 | unnamed protein product [Coffea canephora] | 708 | 002566 (6) | emb|CDP04145.1| | 2e-108 | unnamed protein product [Coffea canephora] |
| JMSF012F12 | Sequence | 478 | 003252 (6) | ref|XP_009608692.1| | 2e-69 | PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009 | 752 | 002566 (6) | ref|XP_011044458.1| | 1e-101 | PREDICTED: V-type proton ATPase subunit H isoform X2 [Populus euphratica] |
This contig is upended
. : . : . : . : . : . :
JMFF017L05+ GGCCTGAC
JMFF019G14+ TGAACTTTAGGCCTGAC
____________________________________________________________
consensus TGAACTTTAGGCCTGAC
. : . : . : . : . : . :
JMSF012F12+ CCAGTTACCTTTCCA
JMFF017L05+ ACTTACTATCAAAGAAAGTATCTTGCAACTCTTCTCTTGCACAAACCAGTTACCTTTCCA
JMFF019G14+ ACTTACTATCAAAGAAAGTATCTTGCAACTCTTCTCTTGCACAAACCAGTTACCTTTCCA
JMFF040N19+ TTGCACAAACCAGTTACCTTTCCA
JMFF040N03+ TTGCACAAACCAGTTACCTTTCCA
____________________________________________________________
consensus ACTTACTATCAAAGAAAGTATCTTGCAACTCTTCTCTTGCACAAACCAGTTACCTTTCCA
. : . : . : . : . : . :
JMSF012F12+ GAGCAGTCTTAGGAAAGGTTCATAAGTATCTTCATCTGCAAGAGACTTGTCATGGAATAA
JMFF017L05+ GAGCAGTCTTAGGAAAGGTTCATAAGTATCTTCATCTGCAAGAGACTTGTCATGGAATAA
JMFF019G14+ GAGCAGTCTTAGGAAAGGTTCATAAGTATCTTCATCTGCAAGAGACTTGTCATGGAATAA
JMFF040N19+ GAGCAGTCTTAGGAAAGGTTCATAAGTATCTTCATCTGCAAGAGACTTGTCATGGAATAA
JMFF040N03+ GAGCAGTCTTAGGAAAGGTTCATAAGTATCTTCATCTGCAAGAGACTTGTCATGGAATAA
____________________________________________________________
consensus GAGCAGTCTTAGGAAAGGTTCATAAGTATCTTCATCTGCAAGAGACTTGTCATGGAATAA
. : . : . : . : . : . :
JMSF012F12+ TCTTGCTCTTTTTGGGTTAACAGTAAGCATTTCATCAATTAAAGCTAAAACATATTCCAA
JMFF017L05+ TCTTGCTCTTTTTGGGTTAACAGTAAGCATTTCATCAATTAAAGCTAAAACATATTCCAA
JMFF019G14+ TCTTGCTCTTTTTGGGTTAACAGTAAGCATTTCATCAATTAAAGCTAAAACATATTCCAA
JMFF040N19+ TCTTGCTCTTTTTGGGTTAACAGTAAGCATTTCATCAATTAAAGCTAAAACATATTCCAA
JMFF040N03+ TCTTGCTCTTTTTGGGTTAACAGTAAGCATTTCATCAATTAAAGCTAAAACATATTCCAA
____________________________________________________________
consensus TCTTGCTCTTTTTGGGTTAACAGTAAGCATTTCATCAATTAAAGCTAAAACATATTCCAA
. : . : . : . : . : . :
JMSF012F12+ TGTTTCTTCCTTGAGAATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
JMSF002M19+ AATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
JMFF017L05+ TGTTTCTTCCTTGAGAATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
JMFF019G14+ TGTTTCTTCCTTGAGAATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
JMFF040N19+ TGTTTCTTCCTTGAGAATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
JMFF040N03+ TGTTTCTTCCTTGAGAATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
____________________________________________________________
consensus TGTTTCTTCCTTGAGAATGTCACGTAGGATGCTGACAAACACACGGATGTAAGCCGGACC
. : . : . : . : . : . :
JMSF012F12+ ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
JMSF002M19+ ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
JMFF017L05+ ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
JMFF019G14+ ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
JMFF040N19+ ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
JMFF040N03+ ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
____________________________________________________________
consensus ATCATCATCCAGCAGTTGGGTTTTGTAACTTTCAGCCTTCTTATCATAGCGCCTCAACAG
. : . : . : . : . : . :
JMSF012F12+ TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
JMSF002M19+ TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
JMFF017L05+ TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
JMFF019G14+ TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
JMFF040N19+ TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
JMFF040N03+ TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
____________________________________________________________
consensus TTGAAGACCAGTTCCTGTGATCAGCTTTGTTGTCATGTAAGTCTCCCATGGGATATCCCT
. : . : . : . : . : . :
JMSF012F12+ TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
JMSF002M19+ TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
JMFF017L05+ TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
JMFF019G14+ TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
JMFF040N19+ TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
JMFF040N03+ TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
____________________________________________________________
consensus TGTCAAAACCTGCTCAGTGGTGAGCTCAGCGTGATCCGTTGGCATGGTGAAAATAGGCCT
. : . : . : . : . : . :
JMSF012F12+ CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
JMSF002M19+ CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
JMFF017L05+ CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
JMFF019G14+ CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
JMFF040N19+ CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
JMFF040N03+ CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
____________________________________________________________
consensus CAGATTGATTCCGGAGTCGATTGACCGGAGAGCACTGGGCGAGAACGAGATGTATGGAGG
. : . : . : . : . : . :
JMSF012F12+ ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAGGTT
JMSF002M19+ ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAG
JMFF017L05+ ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAGGTTGGGAAC
JMFF019G14+ ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAGGTTGGGAACGAGTTTTTTATT
JMFF040N19+ ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAGGTTGGGAACGAGTTTTTTATT
JMFF040N03+ ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAGGTTGGGAACGAGTTTTTTATT
____________________________________________________________
consensus ACGAAGGAGAGGAGGAACACAGATGGATCAGAAGAGAAGGTTGGGAACGAGTTTTTTATT