Contig 003249:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF040D23-                                                              CAATAGGC
rJMSF052H07-                                                   AGTATTTTGCTCAATAGGC
                      ____________________________________________________________
consensus                                                      AGTATTTTGCTCAATAGGC
 
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rJMFF040D23-          GTTCTAATAGTTTTACATTGTCGGTAAAGCTTACGCCCAGCATTTATACAAAGGGAGAAC
rJMSF052H07-          GTTCTAATAGTTTTACATTGTCGGTAAAGCTTACGCCCAGCATTTATACAAAGGGAGAAC
                      ____________________________________________________________
consensus             GTTCTAATAGTTTTACATTGTCGGTAAAGCTTACGCCCAGCATTTATACAAAGGGAGAAC
 
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rJMFF040D23-          AAAGAGGAGAGAACCCTCAGGCACTGAGTGACAAGGAAATTATGGAGGACAACTTATATT
rJMSF052H07-          AAAGAGGAGAGAACCCTCAGGCACTGAGTGACAAGGAAATTATGGAGGACAACTTATATT
                      ____________________________________________________________
consensus             AAAGAGGAGAGAACCCTCAGGCACTGAGTGACAAGGAAATTATGGAGGACAACTTATATT
 
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rJMFF040D23-          TGCGCACTTTACTGGAGCCTTGGGGCTGAAACACGACCTCTGTGCTAGATCGAACACAAA
rJMSF052H07-          TGCGCACTTTACTGGAGCCTTGGGGCTGAAACACGACCTCTGTGCTAGATCGAACACAAA
                      ____________________________________________________________
consensus             TGCGCACTTTACTGGAGCCTTGGGGCTGAAACACGACCTCTGTGCTAGATCGAACACAAA
 
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rJMFF040D23-          CTTCGTTCCACTCAGAACCTGAAGCTCCTTCACCGTGATAATCTCGAGGGCTGTAAAGAA
rJMSF052H07-          CTTCGTTCCACTCAGAACCTGAAGCTCCTTCACCGTGATAATCTCGAGGGCTGTAAAGAA
                      ____________________________________________________________
consensus             CTTCGTTCCACTCAGAACCTGAAGCTCCTTCACCGTGATAATCTCGAGGGCTGTAAAGAA
 
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rJMFF040D23-          CTTGAAGTTTTGAATGAGCTAAACCAAACATGCTTGTCTTTTGGGTAGTCAGCCCACTAA
rJMSF052H07-          CTTGAAGTTTTGAATGAGCTAAACCAAACATGCTTGTCTTTTGGGTAGTCAGCCCACTAA
                      ____________________________________________________________
consensus             CTTGAAGTTTTGAATGAGCTAAACCAAACATGCTTGTCTTTTGGGTAGTCAGCCCACTAA
 
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rJMFF040D23-          CTTTTGATCTCTTGATATTTCTTAATTCCAAAATATCATCCTTATCTCCTTTGAATTCCA
rJMSF052H07-          CTTTTGATCTCTTGATATTTCTTAATTCCAAAATATCATCCTTATCTCCTTTGAATTCCA
                      ____________________________________________________________
consensus             CTTTTGATCTCTTGATATTTCTTAATTCCAAAATATCATCCTTATCTCCTTTGAATTCCA
 
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rJMFF040D23-          GAAACTCTCCTAGGACAGATTTATTACTTTTAAGCTTCAATCTGTCCCACATTGGAGCTG
rJMSF052H07-          GAAACTCTCCTAGGACAGATTTATTACTTTTAAGCTTCAATCTGTCCCACATTGGAGCTG
                      ____________________________________________________________
consensus             GAAACTCTCCTAGGACAGATTTATTACTTTTAAGCTTCAATCTGTCCCACATTGGAGCTG
 
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rJMFF040D23-          TGCTGAGAATGGAATTAAGGCTCTCATGTATTGATTCCTGCATTTCCTTCTTTCCACCAT
rJMSF052H07-          TGCTGAGAATGGAATTAAGGCTCTCATGTATTGATTCCTGCATTTCCTTCTTTCCACCAT
JMSF052H07+                                                             TTTCCACCAT
                      ____________________________________________________________
consensus             TGCTGAGAATGGAATTAAGGCTCTCATGTATTGATTCCTGCATTTCCTTCTTTCCACCAT
 
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rJMFF040D23-          GAAATGCACCTTTCATCCAACCAGAAAGCAAGCTATTTTTTTCAGGCTTTAGCTGTATCC
rJMSF052H07-          GAAATGCACCTTTCATCCAACCAGAAAGCAAGCTATTTTTTTCAGGCTTTAGCTGTATCC
JMSF052H07+           GAAATGCACCTTTCATCCAACCAGAAAGCAAGCTATTTTTTTCAGGCTTTAGCTGTATCC
                      ____________________________________________________________
consensus             GAAATGCACCTTTCATCCAACCAGAAAGCAAGCTATTTTTTTCAGGCTTTAGCTGTATCC
 
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rJMFF040D23-          ACTGGTCATAAGTTATCACCTCAGGAGGAAAAGAGTCAGCATGAATGGTTCGAAAATTGG
rJMSF052H07-          ACTGGTCATAAGTTATCACCTCAGGAGGAAAAGAGTCAGCATGAATGGTTCGAAAATTGG
JMSF052H07+           ACTGGTCATAAGTTATCACCTCAGGAGGAAAAGAGTCAGCATGAATGGTTCGAAAATTGG
                      ____________________________________________________________
consensus             ACTGGTCATAAGTTATCACCTCAGGAGGAAAAGAGTCAGCATGAATGGTTCGAAAATTGG
 
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rJMFF040D23-          GATTTGGACATATGACCTTGCACGACAAATATCCTTCTGGAAGAGCTACTCCCCTTCGCT
rJMSF052H07-          GATTTGGACATATGACCTTGCACGACAAATATCCTTCTGGAAGAGCTACTCCCCTTCGCT
JMSF052H07+           GATTTGGACATATGACCTTGCACGACAAATATCCTTCTGGAAGAGCTACTCCCCTTCGCT
JMFF040D23+                                                               CCTTCGCT
                      ____________________________________________________________
consensus             GATTTGGACATATGACCTTGCACGACAAATATCCTTCTGGAAGAGCTACTCCCCTTCGCT
 
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rJMFF040D23-          CGAGATATGATTCTAGGACGGGAACTAGTTCTTTTGTTTCAGCTACAGGATCTGGAAGAC
rJMSF052H07-          CGAGATATGATTCTAGGACGGGAACTAGTTCTTTTGTTTCAGCTACAGGATCTGGAAGAC
JMSF052H07+           CGAGATATGATTCTAGGACGGGAACTAGTTCTTTTGTTTCAGCTACAGGATCTGGAAGAC
JMFF040D23+           CGAGATATGATTCTAGGACGGGAACTAGTTCTTTTGTTTCAGCTACAGGATCTGGAAGAC
                      ____________________________________________________________
consensus             CGAGATATGATTCTAGGACGGGAACTAGTTCTTTTGTTTCAGCTACAGGATCTGGAAGAC
 
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rJMFF040D23-          GCTCTGTCTTGTCCTTATCTCCACCAATGCAA                            
rJMSF052H07-          GCTCTGTCTTGTCCTTATCTCCACCAATGCAATCCCAATTTCCATCTTTATCAACAGATA
JMSF052H07+           GCTCTGTCTTGTCCTTATCTCCACCAATGCAATCCCAATTTCCATCTTTATCAACAGATA
JMFF040D23+           GCTCTGTCTTGTCCTTATCTCCACCAATGCAATCCCAATTTCCATCTTTATCAACAGATA
                      ____________________________________________________________
consensus             GCTCTGTCTTGTCCTTATCTCCACCAATGCAATCCCAATTTCCATCTTTATCAACAGATA
 
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rJMSF052H07-          CAAATCCCGATACATTCTTCACAGATATTACAGCAGCTTCTCGTTGAGTGACGAGAACAA
JMFN005O11+                     TACATTCTTCACAGATATTACAGCAGCTTCTCGTTGAGTGACGAGAACAA
JMSF052H07+           CAAATCCCGATACATTCTTCACAGATATTACAGCAGCTTCTCGTTGAGTGACGAGAACAA
JMFF040D23+           CAAATCCCGATACATTCTTCACAGATATTACAGCAGCTTCTCGTTGAGTGACGAGAACAA
                      ____________________________________________________________
consensus             CAAATCCCGATACATTCTTCACAGATATTACAGCAGCTTCTCGTTGAGTGACGAGAACAA
 
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rJMSF052H07-          TATCAATATTCTGGGGAGATCCGGAATCGGCGTCTGGAATTCGGAGGCCAACATAAGCCT
JMFN005O11+           TATCAATATTCTGGGGAGATCCGGAATCGGCGTCTGGAATTCGGAGGCCAACATAAGCCT
JMSF052H07+           TATCAATATTCTGGGGAGATCCGGAATCGGCGTCTGGAATTCGGAGGCCAACATAAGCCT
JMFF040D23+           TATCAATATTCTGGGGAGATCCGGAATCGGCGTCTGGAATTCGGAGGCCAACATAAGCCT
                      ____________________________________________________________
consensus             TATCAATATTCTGGGGAGATCCGGAATCGGCGTCTGGAATTCGGAGGCCAACATAAGCCT
 
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rJMSF052H07-          TACCACCGTAAAGCTGTTCCAACCGTTGGGCCACGGAGAAAATGGCGTTGGC        
JMFN005O11+           TACCACCGTAAAGCTGTTCCAACCGTTTGGCCACGGAGAAAATGGCGTTGGCAGGGTAGG
JMSF052H07+           TACCACCGTAAAGCTGTTCCAACCGTTTGGCCACGGAGAAAATGGCGTTGGCAGGGTAGG
JMFF040D23+           TACCACCGTAAAGCTGTTCCAACCGTTTGGCCACGGAGAAAATGGCGTTGGCAGGGTAGG
                      ____________________________________________________________
consensus             TACCACCGTAAAGCTGTTCCAACCGTTTGGCCACGGAGAAAATGGCGTTGGCAGGGTAGG
 
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JMFN005O11+           TCCCCACATCGAGATCGTCGCCGTTGGAGAAGAAGCGACGGAGCAATTGGAAGATGATGA
JMSF052H07+           TCCCCACATCGAGATCGTCGCCGTTGGAGAAGAAGCGACGGAGCAATTGGAAGATGATGA
JMFF040D23+           TCCCCACATCGAGATCGTCGCCGTTGGAGAAGAAGCGACGGAGCAATTGGAAGATGATGA
                      ____________________________________________________________
consensus             TCCCCACATCGAGATCGTCGCCGTTGGAGAAGAAGCGACGGAGCAATTGGAAGATGATGA
 
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JMFN005O11+           TTCCGATGATCAGCTCAAACCACATAATTTCTCACTGTTGTTGCTCCCGCCGTCGGCGAT
JMSF052H07+           TTCCGATGATCAGCTCAAACCACATAATTTCTCACTGTTGTTGCTCCCGCCGTCGGCGAT
JMFF040D23+           TTCCGATGATCAGCTCAAACCACATAATTTCTCACTGTTGTTGCTCCCGCCGTCGGCGAT
                      ____________________________________________________________
consensus             TTCCGATGATCAGCTCAAACCACATAATTTCTCACTGTTGTTGCTCCCGCCGTCGGCGAT
 
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JMFN005O11+           CGATGATCCTTTTAACAAGGATGAACTCTTCCGTAGCTTGGTTTGCC             
JMSF052H07+           CGATGATCCTTTTAACAAGGATGAACTCTTCCGTAGCTTGGTTTGCCGGTTTCGAAC   
JMFF040D23+           CGATGATCCTTTTAACAAGGATGAACTCTTCCGTAGCTTGGTTTGCCGGTTTCGAACTAT
                      ____________________________________________________________
consensus             CGATGATCCTTTTAACAAGGATGAACTCTTCCGTAGCTTGGTTTGCCGGTTTCGAACTAT